View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11572_high_1 (Length: 667)

Name: NF11572_high_1
Description: NF11572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11572_high_1
NF11572_high_1
[»] chr1 (24 HSPs)
chr1 (378-653)||(49873636-49873915)
chr1 (184-380)||(51676196-51676392)
chr1 (213-307)||(35712524-35712618)
chr1 (184-311)||(30232609-30232736)
chr1 (262-377)||(35713633-35713749)
chr1 (184-287)||(24304170-24304273)
chr1 (222-379)||(17242002-17242159)
chr1 (217-307)||(13970021-13970109)
chr1 (325-378)||(17240716-17240769)
chr1 (333-379)||(21747941-21747987)
chr1 (333-378)||(42098740-42098785)
chr1 (265-379)||(43402261-43402373)
chr1 (324-377)||(9008761-9008813)
chr1 (222-287)||(9010956-9011020)
chr1 (114-162)||(35712663-35712712)
chr1 (222-307)||(48030135-48030219)
chr1 (333-377)||(42097326-42097370)
chr1 (330-388)||(48030244-48030301)
chr1 (210-288)||(49384385-49384463)
chr1 (222-307)||(24303003-24303087)
chr1 (333-378)||(43403307-43403352)
chr1 (114-156)||(30232547-30232589)
chr1 (333-378)||(13971012-13971057)
chr1 (324-376)||(49383023-49383074)
[»] chr6 (17 HSPs)
chr6 (392-645)||(14922749-14923004)
chr6 (447-650)||(34096573-34096775)
chr6 (229-307)||(26545772-26545850)
chr6 (217-383)||(5858892-5859059)
chr6 (222-377)||(21383718-21383874)
chr6 (225-307)||(7538332-7538414)
chr6 (264-378)||(21382481-21382596)
chr6 (264-377)||(25482148-25482262)
chr6 (333-380)||(32146102-32146149)
chr6 (210-382)||(9307028-9307199)
chr6 (333-378)||(9305620-9305665)
chr6 (264-378)||(25483340-25483454)
chr6 (272-307)||(26544415-26544450)
chr6 (265-307)||(32145126-32145167)
chr6 (345-379)||(35223130-35223164)
chr6 (333-378)||(12603936-12603980)
chr6 (583-635)||(19975537-19975588)
[»] chr5 (10 HSPs)
chr5 (184-378)||(27491135-27491329)
chr5 (455-648)||(25635639-25635833)
chr5 (447-568)||(26707827-26707947)
chr5 (447-568)||(26977561-26977681)
chr5 (262-379)||(27490097-27490217)
chr5 (114-162)||(27491066-27491114)
chr5 (390-540)||(16085742-16085892)
chr5 (335-377)||(32953094-32953136)
chr5 (333-378)||(29875946-29875990)
chr5 (325-377)||(12316348-12316399)
[»] scaffold0086 (1 HSPs)
scaffold0086 (447-649)||(37895-38096)
[»] chr8 (13 HSPs)
chr8 (447-649)||(44316275-44316476)
chr8 (184-300)||(26521861-26521977)
chr8 (184-380)||(9755681-9755875)
chr8 (450-649)||(29278465-29278664)
chr8 (184-380)||(40462267-40462464)
chr8 (184-306)||(34315031-34315145)
chr8 (217-384)||(38973746-38973912)
chr8 (217-384)||(39004844-39005010)
chr8 (322-379)||(14099743-14099799)
chr8 (114-162)||(26521798-26521847)
chr8 (333-380)||(3923618-3923665)
chr8 (333-378)||(3917795-3917839)
chr8 (349-378)||(14101115-14101144)
[»] chr4 (37 HSPs)
chr4 (184-380)||(12862573-12862771)
chr4 (191-376)||(56083355-56083541)
chr4 (434-648)||(6660878-6661093)
chr4 (185-307)||(6658616-6658738)
chr4 (423-645)||(6685515-6685739)
chr4 (215-379)||(16312645-16312810)
chr4 (443-631)||(572331-572520)
chr4 (215-378)||(16314092-16314256)
chr4 (217-377)||(5170278-5170439)
chr4 (222-378)||(1996955-1997113)
chr4 (184-377)||(5169313-5169507)
chr4 (333-379)||(17288766-17288812)
chr4 (220-379)||(1995866-1996026)
chr4 (332-377)||(2753074-2753119)
chr4 (333-377)||(17288631-17288675)
chr4 (216-287)||(47863573-47863644)
chr4 (322-380)||(20673562-20673620)
chr4 (325-378)||(2751517-2751570)
chr4 (325-378)||(44353875-44353928)
chr4 (336-380)||(23504892-23504936)
chr4 (333-377)||(23506393-23506437)
chr4 (333-378)||(20674822-20674867)
chr4 (333-378)||(51568808-51568853)
chr4 (197-288)||(24126288-24126379)
chr4 (325-379)||(24685022-24685076)
chr4 (333-379)||(39661327-39661373)
chr4 (333-378)||(6866692-6866737)
chr4 (322-379)||(43742021-43742078)
chr4 (333-377)||(6872612-6872656)
chr4 (333-377)||(24686529-24686573)
chr4 (330-379)||(44355420-44355468)
chr4 (330-378)||(47376531-47376580)
chr4 (222-287)||(47378629-47378693)
chr4 (333-374)||(47861936-47861976)
chr4 (323-379)||(12861410-12861465)
chr4 (345-377)||(47863692-47863724)
chr4 (226-306)||(52706698-52706777)
[»] chr3 (30 HSPs)
chr3 (184-300)||(34825663-34825779)
chr3 (215-378)||(34799864-34800028)
chr3 (184-296)||(46652789-46652901)
chr3 (217-376)||(39605584-39605740)
chr3 (184-376)||(11151453-11151646)
chr3 (215-379)||(36437212-36437377)
chr3 (215-378)||(36438664-36438828)
chr3 (267-378)||(9239077-9239186)
chr3 (264-378)||(37086681-37086796)
chr3 (264-365)||(34801331-34801433)
chr3 (184-307)||(39606496-39606619)
chr3 (333-379)||(15439689-15439735)
chr3 (333-378)||(11150270-11150315)
chr3 (325-378)||(15438469-15438522)
chr3 (114-162)||(34825793-34825842)
chr3 (333-378)||(42278465-42278510)
chr3 (114-162)||(46652726-46652775)
chr3 (217-293)||(54672714-54672789)
chr3 (322-380)||(48537849-48537905)
chr3 (333-378)||(30034613-30034658)
chr3 (264-379)||(37085411-37085526)
chr3 (226-306)||(52043327-52043406)
chr3 (330-379)||(13865962-13866009)
chr3 (114-148)||(37085645-37085679)
chr3 (265-307)||(52092839-52092881)
chr3 (325-378)||(39606639-39606692)
chr3 (249-306)||(52042184-52042241)
chr3 (247-307)||(13865880-13865939)
chr3 (619-647)||(19930895-19930923)
chr3 (186-311)||(48537918-48538052)
[»] chr2 (10 HSPs)
chr2 (184-299)||(29043482-29043597)
chr2 (525-658)||(19436378-19436511)
chr2 (249-379)||(29042334-29042463)
chr2 (392-487)||(19436490-19436587)
chr2 (114-162)||(29043419-29043468)
chr2 (332-377)||(30776466-30776511)
chr2 (222-310)||(31916018-31916106)
chr2 (325-380)||(25650006-25650061)
chr2 (210-288)||(25649888-25649966)
chr2 (215-294)||(18775404-18775484)
[»] chr7 (23 HSPs)
chr7 (185-379)||(23526628-23526824)
chr7 (221-300)||(7849155-7849234)
chr7 (184-250)||(47578469-47578535)
chr7 (262-378)||(7848005-7848120)
chr7 (222-378)||(21261979-21262137)
chr7 (222-377)||(5737177-5737332)
chr7 (325-377)||(5769308-5769360)
chr7 (325-377)||(47578587-47578639)
chr7 (325-378)||(23525580-23525633)
chr7 (264-378)||(21263259-21263374)
chr7 (333-379)||(12628031-12628077)
chr7 (517-649)||(2434250-2434383)
chr7 (333-378)||(12629439-12629484)
chr7 (455-543)||(18017294-18017382)
chr7 (264-301)||(23525665-23525702)
chr7 (114-162)||(47578399-47578448)
chr7 (249-374)||(47573094-47573219)
chr7 (114-159)||(7849051-7849097)
chr7 (217-307)||(23456571-23456661)
chr7 (270-307)||(19628126-19628163)
chr7 (330-378)||(6591268-6591315)
chr7 (229-285)||(12629334-12629390)
chr7 (275-307)||(47578533-47578565)
[»] scaffold0262 (2 HSPs)
scaffold0262 (184-287)||(2849-2951)
scaffold0262 (322-378)||(4379-4435)
[»] scaffold0061 (2 HSPs)
scaffold0061 (215-304)||(9862-9950)
scaffold0061 (333-379)||(11264-11310)
[»] scaffold0049 (4 HSPs)
scaffold0049 (333-386)||(377-430)
scaffold0049 (324-378)||(3924-3977)
scaffold0049 (333-379)||(1130-1176)
scaffold0049 (324-377)||(3418-3471)
[»] scaffold0071 (2 HSPs)
scaffold0071 (333-379)||(22456-22502)
scaffold0071 (325-378)||(23669-23722)
[»] scaffold0471 (1 HSPs)
scaffold0471 (197-288)||(10876-10967)
[»] scaffold0197 (1 HSPs)
scaffold0197 (232-307)||(28850-28924)
[»] scaffold0408 (1 HSPs)
scaffold0408 (333-379)||(10085-10129)
[»] scaffold0484 (1 HSPs)
scaffold0484 (321-379)||(11534-11591)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 378 - 653
Target Start/End: Original strand, 49873636 - 49873915
Alignment:
Q  378 tatataaaaatacaacatatttcaaaaattcaaaaattaatttagaaaacactttttgggtttatatcttggatgtaatgcatcaaactggtatagcaag 477  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  49873636 tatataaaaatacaacatatttcaaaagttcaaaaattaatttagaaaacactttttgggtttatatcttggatgtaatgcatcaaactgatatagcaag 49873735  T
Q  478 ctatatg----aactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaagcaaagacacttatgtatgttagcggcc 573  Q
    |||||||    ||||| |||||||||||||||||||||||| |||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||    
T  49873736 ctatatgtatgaactactgctagaatgatagtacttaacacgcagtaaaattgatatagcaagctatatgaaccaaagacacttatgtatgttagcggcc 49873835  T
Q  574 taccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaataggccgtacgcgtgcctggataatt 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49873836 taccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaataggccgtacgcgtgcctggataatt 49873915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 184 - 380
Target Start/End: Original strand, 51676196 - 51676392
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    ||||| |||||||||||| |||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| || ||| ||||||||    
T  51676196 tatgatgtgtcattgccacttcactcatcactacacagtcagcgtgccacatcaattcattaatccagtcagatggcatcagggttgaaaatcaaagaat 51676295  T
Q  284 cttcattttacaagggggaatctctaagnnnnnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    ||||||||||||||||||| |||| ||          | || |||| ||||||||||| ||||||||| ||| ||||||||||| |||||||||||||    
T  51676296 cttcattttacaagggggattctccaattttttttttgttaggggggtataccaaaagacccccaaatagca-gggggtaaaagtctattaaccctat 51676392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 213 - 307
Target Start/End: Complemental strand, 35712618 - 35712524
Alignment:
Q  213 actacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  35712618 actacacagtcagcgtgtcacatcagctcattaatccagtcagatgacatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 35712524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 184 - 311
Target Start/End: Original strand, 30232609 - 30232736
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    ||||| |||||| ||||||||||  |||||||   |||| | | ||||||||||||||||||||||||||| ||| ||||| ||||||||||||||||||    
T  30232609 tatgatgtgtcaatgccatttcatccatcactgtgcagttaacatgccacatcagctcattaatccagtcaaatgacatcaagggtgtaaaccaaagaat 30232708  T
Q  284 cttcattttacaagggggaatctctaag 311  Q
    |||||||||| |||||  ||||||||||    
T  30232709 cttcattttataagggaaaatctctaag 30232736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 262 - 377
Target Start/End: Original strand, 35713633 - 35713749
Alignment:
Q  262 tcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngata-ggggttataccaaaagtcccccaaatggcagggggg 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||         |||| |||| ||||||||||| |||||| ||||||||||||    
T  35713633 tcaggggtgtaaaccaaagaatcttcattttacaagggggaatctccaagtttttttttgatatgggggtataccaaaagacccccatatggcagggggg 35713732  T
Q  361 taaaagcctattaaccc 377  Q
    |||||||| ||||||||    
T  35713733 taaaagcccattaaccc 35713749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 287
Target Start/End: Original strand, 24304170 - 24304273
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| ||||| |||||||||||  ||||||||||||||||||||||  ||||||||||| |||||| || | |||| || ||| ||||||||    
T  24304170 tatgacgtgtcagtgccacttcactcatcatcacacagtcagcgtgccacatcaattcattaatccaatcagattgcctgagggttgaaaatcaaagaat 24304269  T
Q  284 cttc 287  Q
    ||||    
T  24304270 cttc 24304273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 222 - 379
Target Start/End: Original strand, 17242002 - 17242159
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnng 321  Q
    |||||||||||||||| | |||||||| ||||||||||  |  |||||||||||||||||||||||   |  |||||||||||||  |||         |    
T  17242002 tcagcgtgccacatcatcacattaatctagtcagatggtttg-ggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttg 17242100  T
Q  322 ataggggt-tataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    | |||||  ||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  17242101 acaggggggtataccaaaaagcccccaaatggcaggggggtaaaagcctattaacccta 17242159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 217 - 307
Target Start/End: Complemental strand, 13970109 - 13970021
Alignment:
Q  217 cacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    |||| |||||||||||||||| |||||||||||||||| ||||  |  ||||| |||||||||||||||||||||||| ||||||||||||    
T  13970109 cacaatcagcgtgccacatcatctcattaatccagtcatatgg-tttgggggtataaaccaaagaatcttcattttac-agggggaatctc 13970021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 17240769 - 17240716
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17240769 gggggtataccaaaagacccccaaatggcaggggggtaaaagcctattaaccct 17240716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 21747987 - 21747941
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  21747987 accaaaagacccccaaatggcaggggggtaaaagcctattaacccta 21747941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 42098740 - 42098785
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||||| |||||||||||||||||||||||||||||||||||||    
T  42098740 accaaaagacccccaaatggcaggggggtaaaagcctattaaccct 42098785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 265 - 379
Target Start/End: Complemental strand, 43402373 - 43402261
Alignment:
Q  265 ggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngataggggttataccaaaagtcccccaaatggcaggggggtaaa 364  Q
    |||||||||||||||||||||| ||||||||  |||||||||| |||          ||||||| || |||||||| |||||||||||||| ||||||||    
T  43402373 ggggtgtaaaccaaagaatctttattttacataggggaatctccaagttttttttc-atagggggtaaaccaaaagacccccaaatggcag-ggggtaaa 43402276  T
Q  365 agcctattaacccta 379  Q
    |||||||||| ||||    
T  43402275 agcctattaatccta 43402261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 324 - 377
Target Start/End: Complemental strand, 9008813 - 9008761
Alignment:
Q  324 aggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    ||||| ||||||||||| |||||||||||||| |||||||||||||||||||||    
T  9008813 agggggtataccaaaagacccccaaatggcag-ggggtaaaagcctattaaccc 9008761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 9010956 - 9011020
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttc 287  Q
    |||||||||||||||| | |||||||||||||||||||  |  |||||||||||||||||||||||    
T  9010956 tcagcgtgccacatcatcacattaatccagtcagatgg-tttgggggtgtaaaccaaagaatcttc 9011020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 35712712 - 35712663
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatc-ttttaacataatttt 162  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  35712712 aatttatcattaagggtattttaggtatttcatctttttaacataatttt 35712663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 222 - 307
Target Start/End: Original strand, 48030135 - 48030219
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    |||||| ||||||| |||| ||| ||||| ||||||||| |  ||||||||||||||||||||| ||||||| ||||| |||||||    
T  48030135 tcagcgcgccacataagcttatttatccaatcagatggcctg-ggggtgtaaaccaaagaatctacattttataagggagaatctc 48030219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 42097370 - 42097326
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    |||||||| |||||||||||||||||||||||| |||||||||||    
T  42097370 accaaaagacccccaaatggcaggggggtaaaaacctattaaccc 42097326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 388
Target Start/End: Original strand, 48030244 - 48030301
Alignment:
Q  330 tataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctatataaaaat 388  Q
    |||| |||||| ||||||||||||||||| |||||||||||||||||||| | ||||||    
T  48030244 tatatcaaaagacccccaaatggcagggg-gtaaaagcctattaaccctaaaaaaaaat 48030301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 49384385 - 49384463
Alignment:
Q  210 atcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttca 288  Q
    |||| |||||||||||| |||||| | |||| |||  |||||||| ||| ||||||||||  |||||||||||||||||    
T  49384385 atcaatacacagtcagcatgccacctaagctaatttgtccagtcacatgccatcaggggtcaaaaccaaagaatcttca 49384463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 222 - 307
Target Start/End: Complemental strand, 24303087 - 24303003
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    ||||||||||| |||| | |||||||||| ||||||||| | | ||||||||| ||||||||||||   || ||||||||||||||    
T  24303087 tcagcgtgccaaatcatcacattaatccattcagatggcttga-gggtgtaaatcaaagaatcttctaattgcaagggggaatctc 24303003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 43403307 - 43403352
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||||| |||||||||| ||||||| ||||||||||||||||||    
T  43403307 accaaaagacccccaaatgacagggggataaaagcctattaaccct 43403352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 30232547 - 30232589
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatcttttaacat 156  Q
    |||||||| |||||||||||||||||||||||  |||||||||    
T  30232547 aatttatcattaagggtattttaggtatttcactttttaacat 30232589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 13971012 - 13971057
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||||| | ||||||||||||||| |||||| ||||||||||||    
T  13971012 accaaaagactcccaaatggcaggggagtaaaaacctattaaccct 13971057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 324 - 376
Target Start/End: Complemental strand, 49383074 - 49383023
Alignment:
Q  324 aggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacc 376  Q
    ||||| || ||||||||||||| ||||||||| |||||||||| |||||||||    
T  49383074 agggggtaaaccaaaagtcccctaaatggcag-ggggtaaaagtctattaacc 49383023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 177; Significance: 5e-95; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 392 - 645
Target Start/End: Complemental strand, 14923004 - 14922749
Alignment:
Q  392 acatatttcaaaaattcaaaaattaatttagaaaacactttttgggtttatatcttggatgtaatgcatcaaactggtat--agcaagctatatgaacta 489  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| |  |||||| ||||||||| |    
T  14923004 acatatttcaaaagttcaaaaattagtttagaaaacactttttgggtttacatcttggatgtaatgcatcaaactggtgtgtagcaagatatatgaacca 14922905  T
Q  490 gtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaagcaaagacacttatgtatgttagcggcctaccactcgcatcaca 589  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  14922904 gtgctagaatgatagtacttaacacacagtgaaattggtgtagcaaactatatgaaccaaagacacttatgtatgttagcggtctaccactcgcatcaca 14922805  T
Q  590 cccccacaatccttgccgttaacgttgtggtgcgctaataggccgtacgcgtgcct 645  Q
    |||||||||| |||| | ||||||  ||||||| |||||||||||| |||||||||    
T  14922804 cccccacaattcttgtcattaacgcggtggtgcactaataggccgtgcgcgtgcct 14922749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 447 - 650
Target Start/End: Original strand, 34096573 - 34096775
Alignment:
Q  447 tggatgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaag 546  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||| ||  ||||||||||||||||| ||||| ||||||||||||||||     
T  34096573 tggatgtgatgcatcaaactggtgtagcaagctatatgaaccagtcctagaatggtaa-acttaacacacagtgaatttggtgtagcaagctatatgaac 34096671  T
Q  547 caaagacacttatgtatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaataggccgtacgcgtgcctg 646  Q
    ||||||||||| |||||||||| || ||| ||| |||||| |||||||||||| |||| ||||  || |||||||||| |||||||||| ||||||| ||    
T  34096672 caaagacacttgtgtatgttagaggtctatcacccgcatcgcacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttg 34096771  T
Q  647 gata 650  Q
    ||||    
T  34096772 gata 34096775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 229 - 307
Target Start/End: Original strand, 26545772 - 26545850
Alignment:
Q  229 gccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    ||||| ||| |||||| ||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||    
T  26545772 gccacgtcatctcatttatccagtcagatggccttaggggtgtaaaccaaagaatctttattttacaagggggaatctc 26545850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 217 - 383
Target Start/End: Complemental strand, 5859059 - 5858892
Alignment:
Q  217 cacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnn 316  Q
    ||||||||||||||||||||| |||||||||||| ||||||| ||| ||||| ||| ||||| ||||||| || ||||| | ||||||||| |||         
T  5859059 cacagtcagcgtgccacatcatctcattaatccaatcagatgacattaggggggtacaccaaggaatctttatattacaggagggaatctccaagttttt 5858960  T
Q  317 nnnngatagg-ggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctatata 383  Q
          |||| || || |||||||  ||||||||||||||||||||||||| ||||||||||| ||||    
T  5858959 ttttcgtaggtgggtaaaccaaaaaacccccaaatggcaggggggtaaaagtctattaaccctttata 5858892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 222 - 377
Target Start/End: Original strand, 21383718 - 21383874
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaag-nnnnnnnnn 320  Q
    |||||| ||||||| |||| ||| ||||| ||| ||||  |  ||||||||||||||||||||| ||||||||||||||||||||| |||              
T  21383718 tcagcgcgccacataagctaatttatccaatcaaatggactgcggggtgtaaaccaaagaatctacattttacaagggggaatctccaagtttttttttt 21383817  T
Q  321 gataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    |   |||| ||||||||||| |||| |||||||||||||||||||||||||||||||    
T  21383818 gcaggggggtataccaaaagacccctaaatggcaggggggtaaaagcctattaaccc 21383874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 7538414 - 7538332
Alignment:
Q  225 gcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    ||||||||||||| |||||||||||||||| ||||| | ||| | ||||  ||||||||||||||||||| ||||||||||||    
T  7538414 gcgtgccacatcatctcattaatccagtcatatggccttaggcgggtaactcaaagaatcttcattttacgagggggaatctc 7538332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 264 - 378
Target Start/End: Complemental strand, 21382596 - 21382481
Alignment:
Q  264 aggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngataggggt-tataccaaaagtcccccaaatggcaggggggta 362  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| |||            |||||  ||||||||||| |||||| |||||||||||||     
T  21382596 aggggggtaaaccaaagaatctacattttacaagggggaatctccaagttttttttttgcaggggggtataccaaaagacccccatatggcaggggggtg 21382497  T
Q  363 aaagcctattaaccct 378  Q
    ||||||||||||||||    
T  21382496 aaagcctattaaccct 21382481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 264 - 377
Target Start/End: Complemental strand, 25482262 - 25482148
Alignment:
Q  264 aggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngataggggt-tataccaaaagtcccccaaatggcaggggggta 362  Q
    ||||| || |||||| ||||||||||||| |||||||||||||| |||         ||||||||  || |||||||| | || ||||||||||||||||    
T  25482262 aggggggtgaaccaaggaatcttcattttgcaagggggaatctccaagtttttttttgataggggggtaaaccaaaagactcctaaatggcaggggggta 25482163  T
Q  363 aaagcctattaaccc 377  Q
    |||||||||||||||    
T  25482162 aaagcctattaaccc 25482148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 32146102 - 32146149
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||    
T  32146102 accaaaagacccccaaatggcagggggataaaagcctattaaccctat 32146149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 382
Target Start/End: Original strand, 9307028 - 9307199
Alignment:
Q  210 atcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctcta 309  Q
    |||| ||| |||||||| |||||| | ||||||||  |||||||| ||| ||||||||||  ||| |||||||| ||||  |  | |||||||||||| |    
T  9307028 atcaatactcagtcagcatgccacctaagctcatttgtccagtcacatgccatcaggggtcaaaatcaaagaatattcaaatggcgagggggaatctcca 9307127  T
Q  310 agnnnnnnnnngataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctatat 382  Q
    ||          ||||||| ||||||||||  | |||| ||||||||||||||||| ||||||||||||||||    
T  9307128 agttttttttt-atagggggtataccaaaatacgcccatatggcaggggggtaaaaacctattaaccctatat 9307199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 9305665 - 9305620
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||||||| || |||| |||||||||||||||||||||||||||    
T  9305665 accaaaagtctcctaaatagcaggggggtaaaagcctattaaccct 9305620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 378
Target Start/End: Original strand, 25483340 - 25483454
Alignment:
Q  264 aggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggta 362  Q
    ||||| || |||||||||||||||||||| |||||||||||||  |||         |||| |||| ||  ||||||| | ||||||||||| |||||||    
T  25483340 aggggggtgaaccaaagaatcttcattttgcaagggggaatctacaagtttttttatgataggggggtaatccaaaagactcccaaatggca-gggggta 25483438  T
Q  363 aaagcctattaaccct 378  Q
    ||||||||||||||||    
T  25483439 aaagcctattaaccct 25483454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 272 - 307
Target Start/End: Complemental strand, 26544450 - 26544415
Alignment:
Q  272 aaaccaaagaatcttcattttacaagggggaatctc 307  Q
    ||||||||||||||| ||||||||||||||||||||    
T  26544450 aaaccaaagaatctttattttacaagggggaatctc 26544415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 307
Target Start/End: Complemental strand, 32145167 - 32145126
Alignment:
Q  265 ggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    |||||||||||||||||||||| ||||||| ||||||||||||    
T  32145167 ggggtgtaaaccaaagaatctttattttac-agggggaatctc 32145126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 345 - 379
Target Start/End: Complemental strand, 35223164 - 35223130
Alignment:
Q  345 ccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||||||||||||||||| ||||||||||||    
T  35223164 ccaaatggcaggggggtaaaagtctattaacccta 35223130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 12603980 - 12603936
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||||| | |||||||||||||||| ||||||||||||||||||    
T  12603980 accaaaagactcccaaatggcaggggg-taaaagcctattaaccct 12603936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 583 - 635
Target Start/End: Complemental strand, 19975588 - 19975537
Alignment:
Q  583 catcacacccccacaatccttgccgttaacgttgtggtgcgctaataggccgt 635  Q
    ||||||||||||||||| ||||| ||| |||| || |||||||||||||||||    
T  19975588 catcacacccccacaattcttgctgtt-acgtggttgtgcgctaataggccgt 19975537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 109; Significance: 2e-54; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 184 - 378
Target Start/End: Original strand, 27491135 - 27491329
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    ||||| ||||||||| |||||||  |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  27491135 tatgatgtgtcattgtcatttcatccatcactacacagttagcgtgccacatcagctcattgatccagtcagatggcatcaggggtgtaaaccaaagaat 27491234  T
Q  284 cttcattttacaagggggaatctctaagnnnnnnnnngatag-gggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    ||||||||||||| |||||||||| |||         ||||| ||| | ||||||||||||||||||| ||| |||||||||||||||||||||||    
T  27491235 cttcattttacaatggggaatctccaagtttttttttgatagaggggtgtaccaaaagtcccccaaattgca-gggggtaaaagcctattaaccct 27491329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 455 - 648
Target Start/End: Original strand, 25635639 - 25635833
Alignment:
Q  455 atgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaagcaaagaca 554  Q
    ||||||||||||||| ||||||| ||||||||| | | ||||||||||| ||||||||||| |||||| ||||| || ||||||||||||| |||   ||    
T  25635639 atgcatcaaactggtgtagcaagttatatgaaccaattctagaatgataatacttaacacatagtgaagttggtgtaacaagctatatgaaccaatatca 25635738  T
Q  555 ctt-atgtatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaataggccgtacgcgtgcctgga 648  Q
    ||| | |||||||||| |  || ||| ||||||||| ||||||| | |||| | ||  || |||||| ||| |||||||||| | ||||||||||    
T  25635739 cttaacgtatgttagccgtataacacccgcatcacagccccacatttcttgtcattggcgctgtggttcgcaaataggccgtgcacgtgcctgga 25635833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 447 - 568
Target Start/End: Original strand, 26707827 - 26707947
Alignment:
Q  447 tggatgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaag 546  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||| ||  |||||||||||||| || ||| | ||||| ||||||||||     
T  26707827 tggatgtgatgcatcaaactggtgtagcaagctatatgaaccagtcctagaatggta-aacttaacacacagtcaatttgatgtagcacgctatatgaac 26707925  T
Q  547 caaagacacttatgtatgttag 568  Q
    |||| |||||| ||||||||||    
T  26707926 caaaaacacttgtgtatgttag 26707947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 447 - 568
Target Start/End: Original strand, 26977561 - 26977681
Alignment:
Q  447 tggatgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaag 546  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||| ||  |||||||||||||| || ||| | ||||| ||||||||||     
T  26977561 tggatgtgatgcatcaaactggtgtagcaagctatatgaaccagtcctagaatggta-aacttaacacacagtcaatttgatgtagcacgctatatgaac 26977659  T
Q  547 caaagacacttatgtatgttag 568  Q
    |||| |||||| ||||||||||    
T  26977660 caaaaacacttgtgtatgttag 26977681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 262 - 379
Target Start/End: Complemental strand, 27490217 - 27490097
Alignment:
Q  262 tcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaag--nnnnnnnnngat-aggggttataccaaaagtcccccaaatggcagggg 358  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||           ||| ||||| ||||||||||| |||||| ||| |||||     
T  27490217 tcaggggtgtaaaccaaagaatcttcattttacaagggggaatctccaagtttttttttttgataagggggtataccaaaagacccccatatgacaggga 27490118  T
Q  359 ggtaaaagcctattaacccta 379  Q
    |||||||||||||||||||||    
T  27490117 ggtaaaagcctattaacccta 27490097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 27491066 - 27491114
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatcttttaacataatttt 162  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27491066 aatttatcattaagggtattttaggtatttcatcttttaacataatttt 27491114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 390 - 540
Target Start/End: Original strand, 16085742 - 16085892
Alignment:
Q  390 caacatatttcaaaaattcaaaaattaatttagaaaac--actttttgggtttatatcttggatgtaatgcatcaaactggtatagcaagctatatgaac 487  Q
    ||||||||||||||| |||||||||||| |||||||||  | ||| || ||||| ||||| |||||||||||||  |   ||||||||||||||  ||||    
T  16085742 caacatatttcaaaagttcaaaaattaaattagaaaacaaattttctgagtttagatcttagatgtaatgcatcggaacagtatagcaagctat-ggaac 16085840  T
Q  488 tagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctat 540  Q
      || ||||| | |||  |||||||||| |||| ||||||| |||||||||||    
T  16085841 ctgtcctagactaataagacttaacacatagtg-aattggtttagcaagctat 16085892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 335 - 377
Target Start/End: Complemental strand, 32953136 - 32953094
Alignment:
Q  335 caaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    ||||||||  |||||||||||||||||||||| ||||||||||    
T  32953136 caaaagtcgtccaaatggcaggggggtaaaagtctattaaccc 32953094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 29875990 - 29875946
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||||    
T  29875990 accaaatgtcgcccaaatggcaggggg-taaaagcctattaaccct 29875946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 12316399 - 12316348
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    |||| ||||||||||| || |||||||||| ||| ||||||||||||||||||    
T  12316399 gggggtataccaaaagacctccaaatggca-gggagtaaaagcctattaaccc 12316348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 103; Significance: 6e-51; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 447 - 649
Target Start/End: Original strand, 37895 - 38096
Alignment:
Q  447 tggatgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaag 546  Q
    ||||||| ||||||||||||||| ||| ||||||||||||| ||| |||||||| ||  ||||||||||||||||| ||||| ||||||||||||||||     
T  37895 tggatgtgatgcatcaaactggtgtagaaagctatatgaaccagtcctagaatggtaa-acttaacacacagtgaatttggtgtagcaagctatatgaac 37993  T
Q  547 caaagacacttatgtatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaataggccgtacgcgtgcctg 646  Q
    ||||||||||| |||||||||| || ||| ||| ||||||||||||||||||| |||| ||||  || |||||||||| |||||||||| ||||||| ||    
T  37994 caaagacacttgtgtatgttagaggtctatcacccgcatcacacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttg 38093  T
Q  647 gat 649  Q
    |||    
T  38094 gat 38096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 103; Significance: 6e-51; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 447 - 649
Target Start/End: Complemental strand, 44316476 - 44316275
Alignment:
Q  447 tggatgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaag 546  Q
    ||||||| ||||||||||||||| ||||||||||||||||| ||| |||||||| ||  ||||||||||||||||| ||||| ||||||||||||||||     
T  44316476 tggatgtgatgcatcaaactggtgtagcaagctatatgaaccagtcctagaatggtaa-acttaacacacagtgaatttggtgtagcaagctatatgaac 44316378  T
Q  547 caaagacacttatgtatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaataggccgtacgcgtgcctg 646  Q
    ||||||||||| |||||||||| || ||| ||| |||||| |||||||||||| |||| ||||  || |||||||||| |||||||||| ||||||| ||    
T  44316377 caaagacacttgtgtatgttagaggtctatcacccgcatcgcacccccacaattcttgtcgttggcgctgtggtgcgcaaataggccgtgcgcgtgcttg 44316278  T
Q  647 gat 649  Q
    |||    
T  44316277 gat 44316275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 184 - 300
Target Start/End: Original strand, 26521861 - 26521977
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| |||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26521861 tatgacgtgtcaatgccatttcaccaattactacacagtcagcgtgccacatcagctcattaatccagtcagatgacatcaggggtgtaaaccaaagaat 26521960  T
Q  284 cttcattttacaagggg 300  Q
    |||||||||||||||||    
T  26521961 cttcattttacaagggg 26521977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 184 - 380
Target Start/End: Complemental strand, 9755875 - 9755681
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    ||||| |||||| ||||| ||||||||   ||||||||||||||||| |||||| |||||||||||||||||||| ||| |||| || ||| |||| |||    
T  9755875 tatgatgtgtcaatgccacttcactca---ctacacagtcagcgtgctacatcaactcattaatccagtcagatgacattagggttgaaaatcaaataat 9755779  T
Q  284 cttcattttacaagggggaatctctaagnnnnnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    |||||||||| |||||||||| || |||         | || |||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||    
T  9755778 cttcattttataagggggaatttcaaagtttatttttgttaggggggtataccaaaagacccccaaatggcaggggggtaaaagtctattaaccctat 9755681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 450 - 649
Target Start/End: Complemental strand, 29278664 - 29278465
Alignment:
Q  450 atgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatatgaagcaa 549  Q
    |||| ||||||||||||| | ||||||||||||||||| ||  ||||||||| | | ||||||||| |||||| || || ||||||||| |||||| |||    
T  29278664 atgtgatgcatcaaactgatgtagcaagctatatgaaccagc-ctagaatgacaatgcttaacacaaagtgaagttagtgtagcaagctgtatgaaccaa 29278566  T
Q  550 agacactta-tgtatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaataggccgtacgcgtgcctgga 648  Q
    |  |||||  |||||||||||||  ||||| |||||||||||||||||||| |||| ||||  || ||||||| ||||||||||||| ||||||||||||    
T  29278565 aatcacttggtgtatgttagcggtataccattcgcatcacacccccacaattcttgtcgttggcgctgtggtgtgctaataggccgtgcgcgtgcctgga 29278466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 184 - 380
Target Start/End: Complemental strand, 40462464 - 40462267
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    ||||| |||||| ||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||| || |||||| || ||| ||||||||    
T  40462464 tatgatgtgtcagtgccacttcactcatcattgcacagtcagcgtgccacatcagctcattaatccagtcagattgcctcagggttgaaaatcaaagaat 40462365  T
Q  284 cttcattttacaagggggaatctctaag-nnnnnnnnngataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    ||||   |  |||||||||||||| |||            |||||| || |||||||||| |||| ||||||||||||||||||||||||||||||||    
T  40462364 cttctaatggcaagggggaatctccaagttttttttttcctagggggtaaaccaaaagtcacccatatggcaggggggtaaaagcctattaaccctat 40462267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 184 - 306
Target Start/End: Original strand, 34315031 - 34315145
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||| |  ||||||| || ||| |||||| ||||||||||||||||||||| ||||||||||||||||| |||        ||||  |||||||    
T  34315031 tatgacgtgttagggccattttacccattactacagagtcagcgtgccacatcagcttattaatccagtcagatgacat--------taaattaaagaat 34315122  T
Q  284 cttcattttacaagggggaatct 306  Q
    ||||||||||||| |||||||||    
T  34315123 cttcattttacaaaggggaatct 34315145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 384
Target Start/End: Complemental strand, 38973912 - 38973746
Alignment:
Q  217 cacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnn 316  Q
    |||| |||||||||||||||| |  ||||||| ||||| ||||  |  ||||||||||||||||||||||||||||||  ||| ||||||| |||         
T  38973912 cacaatcagcgtgccacatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttcattttac-cgggagaatctccaagttttt 38973814  T
Q  317 nnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctatataa 384  Q
        || | |||| ||||||||||  ||||||||||||| |||||||||| ||||||||||||| ||||    
T  38973813 ttttgacatgggggtataccaaaaaacccccaaatggca-gggggtaaaaacctattaaccctaaataa 38973746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 217 - 384
Target Start/End: Complemental strand, 39005010 - 39004844
Alignment:
Q  217 cacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnn 316  Q
    |||| |||||||||||||||| |  ||||||| ||||| ||||  |  ||||||||||||||||||||||||||||||  ||| ||||||| |||         
T  39005010 cacaatcagcgtgccacatcatcctattaatctagtcatatggtttggggggtgtaaaccaaagaatcttcattttac-cgggagaatctccaagttttt 39004912  T
Q  317 nnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctatataa 384  Q
        || | |||| ||||||||||  ||||||||||||| |||||||||| ||||||||||||| ||||    
T  39004911 ttttgacatgggggtataccaaaaaacccccaaatggca-gggggtaaaaacctattaaccctaaataa 39004844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 322 - 379
Target Start/End: Complemental strand, 14099799 - 14099743
Alignment:
Q  322 ataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    ||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||    
T  14099799 atagggggtaaaccaaaagacccccaaatggcag-ggggtaaaagcctattaacccta 14099743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 26521798 - 26521847
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatc-ttttaacataatttt 162  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  26521798 aatttatcattaagggtattttaggtatttcatctttttaacataatttt 26521847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 333 - 380
Target Start/End: Original strand, 3923618 - 3923665
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||||||    
T  3923618 accaaatgtcgcccaaatggtaggggggtaaaagcctattaaccctat 3923665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 3917839 - 3917795
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||| ||| |||||||||||||||| ||||||||||||||||||    
T  3917839 accaaatgtcgcccaaatggcaggggg-taaaagcctattaaccct 3917795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 378
Target Start/End: Original strand, 14101115 - 14101144
Alignment:
Q  349 atggcaggggggtaaaagcctattaaccct 378  Q
    ||||||||||||||||||||||||||||||    
T  14101115 atggcaggggggtaaaagcctattaaccct 14101144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 184 - 380
Target Start/End: Original strand, 12862573 - 12862771
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||    
T  12862573 tatgacgtgtcagtgccatttcatccatcactacacagtcagcgtgccacatcagctcattaatccagtcagatgacatcagggttgaaaatcaaagaat 12862672  T
Q  284 cttcattttacaagggggaatctctaagnnnnnnnnngata--ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    |||||||||||||||||||||||| ||          | ||  |||| || |||||||  ||| ||||||||||||||||||| |||||||||||||||    
T  12862673 cttcattttacaagggggaatctccaaaaaaaaaattgttagggggggtaaaccaaaataccctcaaatggcaggggggtaaacgcctattaaccctat 12862771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 191 - 376
Target Start/End: Complemental strand, 56083541 - 56083355
Alignment:
Q  191 tgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcatt 290  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | || ||| |||||||||||||||    
T  56083541 tgtcaatgccacttcactcatcactacacagtcagcgtgccacatcaactcattaatccagtcagatggcatcagagttgaaaatcaaagaatcttcatt 56083442  T
Q  291 ttacaagggggaatctctaag-nnnnnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacc 376  Q
    ||||||||||||||||| |||          | || |||| ||||||||||| ||||||||||||| |||||||||||||||||||||    
T  56083441 ttacaagggggaatctccaagttttttttttgttaggggggtataccaaaagacccccaaatggca-gggggtaaaagcctattaacc 56083355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 434 - 648
Target Start/End: Original strand, 6660878 - 6661093
Alignment:
Q  434 tgggtttatatcttggatgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagc 533  Q
    |||||| | ||| ||||| | |||||| |||||||| || |||| ||||||||| ||| ||||||||||| |||||||||||||||||| ||||| ||||    
T  6660878 tgggttaacatcctggatatgatgcattaaactggtgtaacaagttatatgaaccagtcctagaatgataatacttaacacacagtgaagttggtgtagc 6660977  T
Q  534 aagctatatgaagcaaagacactt-atgtatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaataggc 632  Q
    ||||||||||||  |||  ||||| | ||||||||||||  || ||||||||||||||||||||| | |||| ||||  || |||||||||| |||||||    
T  6660978 aagctatatgaactaaaatcacttaacgtatgttagcggtataacactcgcatcacacccccacatttcttgtcgttggcgctgtggtgcgcgaataggc 6661077  T
Q  633 cgtacgcgtgcctgga 648  Q
    | | ||||||||||||    
T  6661078 catgcgcgtgcctgga 6661093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 185 - 307
Target Start/End: Original strand, 6658616 - 6658738
Alignment:
Q  185 atgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatc 284  Q
    |||| |||||| || |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| || ||| |||||||||    
T  6658616 atgatgtgtcagtgtcatttcatccatcactacacagtcagcgtgccacatcagctcattaatccagtcagatgacatccgggttgaaaatcaaagaatc 6658715  T
Q  285 ttcattttacaagggggaatctc 307  Q
    |||||||||||| ||||||||||    
T  6658716 ttcattttacaaaggggaatctc 6658738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 423 - 645
Target Start/End: Complemental strand, 6685739 - 6685515
Alignment:
Q  423 aaaacactttttgggtttatatcttggatgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaa 522  Q
    |||| |||| ||||||| | ||||||||||| || |||||||||||| ||||||||||||||||| ||  || ||||||||  |||||||||||||||||    
T  6685739 aaaaaacttcttgggttaacatcttggatgtgatacatcaaactggtgtagcaagctatatgaaccagcccttgaatgataagacttaacacacagtgaa 6685640  T
Q  523 attggtatagcaagctatatgaagcaaagacactta-tgtatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttg-tggt 620  Q
     ||||| |||||||||||||||| ||||  ||||||  | ||||||| ||  ||||||||| ||| || ||||| | | |||| | ||  || || ||||    
T  6685639 gttggtgtagcaagctatatgaaccaaaatcacttagcgcatgttagaggtataccactcgtatcgcaaccccatatttcttgtcattggcgctgttggt 6685540  T
Q  621 gcgctaataggccgtacgcgtgcct 645  Q
    |||||||||||| || |||||||||    
T  6685539 gcgctaataggcggtgcgcgtgcct 6685515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 215 - 379
Target Start/End: Complemental strand, 16312810 - 16312645
Alignment:
Q  215 tacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnn 314  Q
    ||||||||||||||||||||||| |||||||||||||||||||| ||| ||||| ||| ||||| ||||||| || ||||| ||||||||||| |||       
T  16312810 tacacagtcagcgtgccacatcatctcattaatccagtcagatgacattaggggggtacaccaaggaatctttatattacaggggggaatctccaagttt 16312711  T
Q  315 nnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
            || |||| || |||||||  |||||||||||||||||||||| || ||||||||||||    
T  16312710 ttttttcgtaggggggtaaaccaaaaaacccccaaatggcaggggggtaagaggctattaacccta 16312645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 443 - 631
Target Start/End: Original strand, 572331 - 572520
Alignment:
Q  443 atcttggatgtaatgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaacacacagtgaaattggtatagcaagctatat 542  Q
    ||||||||||| ||  |||||| |||| |||||| |||||||||| |    |||||||||| || |||||||||||||||  || | |||||||||||||    
T  572331 atcttggatgtgatatatcaaattggtgtagcaaactatatgaaccaaccttagaatgataatagttaacacacagtgaagatgatgtagcaagctatat 572430  T
Q  543 gaagcaaagacacttatg-tatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgctaatagg 631  Q
    ||| ||||  |||||    |||||||||||  |||||||||||||||||||||||||| |||||||||   | |||||||||| ||||||    
T  572431 gaaccaaaatcacttggcatatgttagcggtataccactcgcatcacacccccacaattcttgccgttggagctgtggtgcgcgaatagg 572520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 215 - 378
Target Start/End: Original strand, 16314092 - 16314256
Alignment:
Q  215 tacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnn 314  Q
    |||||| |||||  ||||||||| |||| | ||||||||||||| | | ||||| || |||||||||||||| |||||||||||||||||||| |||       
T  16314092 tacacaatcagcaagccacatcatctcagttatccagtcagatgaccttaggggggtgaaccaaagaatctttattttacaagggggaatctccaagttt 16314191  T
Q  315 nnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
            || |||| || |||||||| |||||||||||||||||||||||||||||||||||||    
T  16314192 ttttttcgtaggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccct 16314256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 217 - 377
Target Start/End: Original strand, 5170278 - 5170439
Alignment:
Q  217 cacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatct-ctaagnnnn 315  Q
    |||| |||||||||||||||| | |||||||||||||| ||||  |  |||| ||||||||||||||||||||||||| ||||||||||| |||||        
T  5170278 cacaatcagcgtgccacatcatcccattaatccagtcatatggtttggggggcgtaaaccaaagaatcttcattttac-agggggaatctcctaagtttt 5170376  T
Q  316 nnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
         |||| |||| ||||||||||  | || |||||||||||||||||||||||||||||||    
T  5170377 tttttgataggggggtataccaaaaaactccaaaatggcaggggggtaaaagcctattaaccc 5170439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 378
Target Start/End: Original strand, 1996955 - 1997113
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnng 321  Q
    |||||| ||||||| |||| ||| ||||| ||| ||||  |  ||||||||||||||||||||| ||||||||||||||||||||| |||              
T  1996955 tcagcgcgccacataagctaatttatccaatcaaatggactggggggtgtaaaccaaagaatctacattttacaagggggaatctccaagtttttttttt 1997054  T
Q  322 at--aggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
     |   |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  1997055 gtcaggggggtataccaaaagacccctaaatggcaggggggtaaaagcctattaaccct 1997113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 184 - 377
Target Start/End: Complemental strand, 5169507 - 5169313
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| ||||| ||||  ||||  ||||||||||||  ||||||||| || | | |  |||||||||||  ||||||    ||||||||||||    
T  5169507 tatgacgtgtcagtgccacttcatccatcgttacacagtcagcacgccacatcaactaaattacacagtcagatggactcagggtccaaaaccaaagaat 5169408  T
Q  284 cttcattttacaagggggaatctctaagnnnnnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    ||||||||| |||||||||||||| |||           || |||| || |||||||| | ||||||||||||||||||||||||||||||||||    
T  5169407 cttcattttgcaagggggaatctccaagttttttttttgtaggggggtaaaccaaaagacgcccaaatggcaggggggtaaaagcctattaaccc 5169313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 17288766 - 17288812
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  17288766 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 17288812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 220 - 379
Target Start/End: Complemental strand, 1996026 - 1995866
Alignment:
Q  220 agtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaag-nnnnnnn 318  Q
    |||||||  ||||| | |||| ||| |||||||||| || | | ||||| |||||||||||||||| ||||||||||||||||||||| |||            
T  1996026 agtcagcacgccacttaagctaatttatccagtcaggtgaccttaggggggtaaaccaaagaatctacattttacaagggggaatctccaagtttttttt 1995927  T
Q  319 nngataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
      |   |||| ||||||||||| |||||| ||||||||||||| |||||||||||||||||    
T  1995926 ttgcaggggggtataccaaaagacccccatatggcaggggggtgaaagcctattaacccta 1995866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 332 - 377
Target Start/End: Original strand, 2753074 - 2753119
Alignment:
Q  332 taccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2753074 taccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 2753119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 333 - 377
Target Start/End: Complemental strand, 17288675 - 17288631
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  17288675 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 17288631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 216 - 287
Target Start/End: Original strand, 47863573 - 47863644
Alignment:
Q  216 acacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttc 287  Q
    ||||||| |||||||||||||||||||||||||||||||||| || | |||| || ||| ||||||||||||    
T  47863573 acacagttagcgtgccacatcagctcattaatccagtcagattgcctgagggttgaaaatcaaagaatcttc 47863644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 20673620 - 20673562
Alignment:
Q  322 ataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    ||||||| || |||||||| | |||||||||||||||||||||||||||||||||||||    
T  20673620 atagggggtaaaccaaaagacacccaaatggcaggggggtaaaagcctattaaccctat 20673562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 2751570 - 2751517
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||| |||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  2751570 gggggtataccaaaagtcccccaaatggcagggggataaaagcttattaaccct 2751517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 44353928 - 44353875
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||| ||||||||||||||||||||||||||||||||||||| || ||||||||    
T  44353928 gggggtataccaaaagtcccccaaatggcaggggggtaaaagtctgttaaccct 44353875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 336 - 380
Target Start/End: Complemental strand, 23504936 - 23504892
Alignment:
Q  336 aaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  23504936 aaaagacccccaaatggcaggggggtaaaagcctattaaccctat 23504892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 23506393 - 23506437
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  23506393 accaaaagacccccaaatggcaggggggtaaaagcctattaaccc 23506437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 20674822 - 20674867
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    ||||||| || |||||||||||||||||||||||||||||||||||    
T  20674822 accaaaaatctcccaaatggcaggggggtaaaagcctattaaccct 20674867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 51568853 - 51568808
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||||||| | |||||||||||||||||||||||||||||||||    
T  51568853 accaaaagtcgctcaaatggcaggggggtaaaagcctattaaccct 51568808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 24126379 - 24126288
Alignment:
Q  197 tgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttca 288  Q
    ||||| |||| | |||| ||||||||||||||||||| | |||| |||  |||||||| | | ||||||||||  |||||||||||||||||    
T  24126379 tgccacttcattgatcaatacacagtcagcgtgccacctaagctaatttgtccagtcacacgtcatcaggggtcaaaaccaaagaatcttca 24126288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 379
Target Start/End: Complemental strand, 24685076 - 24685022
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||| ||||||||||  | |||| |||||||||||||||||||||||||||||||    
T  24685076 gggggtataccaaaatacgcccatatggcaggggggtaaaagcctattaacccta 24685022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 39661327 - 39661373
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||| |||||||||||||||||| ||||| |||||||||||||    
T  39661327 accaaaagacccccaaatggcagggggttaaaaacctattaacccta 39661373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 6866737 - 6866692
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    ||||||||| ||||||||||||||||||||||  ||||||||||||    
T  6866737 accaaaagtaccccaaatggcaggggggtaaacccctattaaccct 6866692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 322 - 379
Target Start/End: Original strand, 43742021 - 43742078
Alignment:
Q  322 ataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    ||||||| || |||||||| ||||||||| ||||||| ||||||| ||||||||||||    
T  43742021 atagggggtaaaccaaaagacccccaaatagcaggggtgtaaaagtctattaacccta 43742078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 6872612 - 6872656
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    ||||||||| ||||||||||||||||||||||  |||||||||||    
T  6872612 accaaaagtaccccaaatggcaggggggtaaacccctattaaccc 6872656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 377
Target Start/End: Original strand, 24686529 - 24686573
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||||    
T  24686529 accaaaagttccctaaatggtaggggggtaaaagcctattaaccc 24686573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 44355420 - 44355468
Alignment:
Q  330 tataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    ||||||||||| || |||||||||| |||||||||| |||||||||||||    
T  44355420 tataccaaaagacctccaaatggca-gggggtaaaaacctattaacccta 44355468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 378
Target Start/End: Complemental strand, 47376580 - 47376531
Alignment:
Q  330 tataccaaaagtcccccaaatggcagg-ggggtaaaagcctattaaccct 378  Q
    ||||||||||| ||||||||||||||| |||||||||||| ||| |||||    
T  47376580 tataccaaaagacccccaaatggcagggggggtaaaagcccattgaccct 47376531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 222 - 287
Target Start/End: Original strand, 47378629 - 47378693
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttc 287  Q
    |||||||||||||||| |||||||||||||||| || || |  ||||| | |||||||||||||||    
T  47378629 tcagcgtgccacatcatctcattaatccagtcatatagc-ttgggggtatgaaccaaagaatcttc 47378693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 333 - 374
Target Start/End: Complemental strand, 47861976 - 47861936
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaa 374  Q
    |||||||| |||||||||||||| ||||||||||||||||||    
T  47861976 accaaaagacccccaaatggcag-ggggtaaaagcctattaa 47861936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 323 - 379
Target Start/End: Complemental strand, 12861465 - 12861410
Alignment:
Q  323 taggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||| || |||||||  ||||||||| |||||||| |||||||||||||||||||    
T  12861465 tagggggtaaaccaaaacacccccaaatagcaggggg-taaaagcctattaacccta 12861410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 345 - 377
Target Start/End: Original strand, 47863692 - 47863724
Alignment:
Q  345 ccaaatggcaggggggtaaaagcctattaaccc 377  Q
    ||||||||||||| |||||||||||||||||||    
T  47863692 ccaaatggcagggaggtaaaagcctattaaccc 47863724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 52706698 - 52706777
Alignment:
Q  226 cgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatct 306  Q
    |||| |||||||  ||||| ||||||||||||||| |  | ||||||||||||| |||||| || || |||||||||||||    
T  52706698 cgtgtcacatcatttcattgatccagtcagatggcttg-gaggtgtaaaccaaataatcttgatatttcaagggggaatct 52706777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 4e-40; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 184 - 300
Target Start/End: Complemental strand, 34825779 - 34825663
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| |||||||||||  || |||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  34825779 tatgacgtgtcagtgccatttcaccaattactatacagtcagcgtgccacatcagctcattaatccagtcaaatgacatcaggggtgtaaaccaaagaat 34825680  T
Q  284 cttcattttacaagggg 300  Q
     ||||||||||||||||    
T  34825679 tttcattttacaagggg 34825663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 215 - 378
Target Start/End: Complemental strand, 34800028 - 34799864
Alignment:
Q  215 tacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnn 314  Q
    |||||| |||||  ||||| ||| |||||| ||||||||||||||| | ||||| ||||||||||||||||||||||| |||||||||||||| |||       
T  34800028 tacacaatcagcaagccacgtcatctcatttatccagtcagatggccttaggggggtaaaccaaagaatcttcattttgcaagggggaatctccaagttt 34799929  T
Q  315 nnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
           ||| |||| || |||||||| ||||||||||||||||||||||||| |||||||||||    
T  34799928 ttttttcataggggggtaaaccaaaagacccccaaatggcaggggggtaaaagtctattaaccct 34799864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 184 - 296
Target Start/End: Original strand, 46652789 - 46652901
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| || ||||||||  || |||||||||||| ||| |||||||| ||||||||||||||||||||  ||||||||||||||| ||| |||    
T  46652789 tatgacgtgtcagtgtcatttcacctattactacacagtcaacgtaccacatcaactcattaatccagtcagatgatatcaggggtgtaaactaaataat 46652888  T
Q  284 cttcattttacaa 296  Q
    |||||||||||||    
T  46652889 cttcattttacaa 46652901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 217 - 376
Target Start/End: Complemental strand, 39605740 - 39605584
Alignment:
Q  217 cacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnn 316  Q
    |||| |||||||||||||||| | |||||||||||||| ||||  |  ||||||||||||||||||||||||||||||| ||||||||||| |||         
T  39605740 cacaatcagcgtgccacatcatcccattaatccagtcatatggtttggggggtgtaaaccaaagaatcttcattttacaggggggaatctccaagttttt 39605641  T
Q  317 nnnngataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacc 376  Q
        || ||||| || |||||||  |||||||||||||  ||||||||||||||||||||    
T  39605640 ttttgacagggg-tacaccaaaaaacccccaaatggca--ggggtaaaagcctattaacc 39605584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 184 - 376
Target Start/End: Original strand, 11151453 - 11151646
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| ||||| |||||||||||  ||||||| | |||||||||||||||||| ||||||||||||| |  | |||| || ||| ||||||||    
T  11151453 tatgacgtgtcagtgccacttcactcatcatcacacagttaacgtgccacatcagctcatgaatccagtcagattgtctgagggttgaaaatcaaagaat 11151552  T
Q  284 cttcattttacaagggggaatctctaagnnnnnnnnngatag-gggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacc 376  Q
    ||||   |  |||||||||||||| ||            ||| ||| || |||||||||||||||||||| |||||||||||||||||||||||    
T  11151553 cttctcatggcaagggggaatctccaaaaaaaaatttcctagaggggtaaaccaaaagtcccccaaatggtaggggggtaaaagcctattaacc 11151646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 215 - 379
Target Start/End: Complemental strand, 36437377 - 36437212
Alignment:
Q  215 tacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnn 314  Q
    ||||||||||||||||||||||| |||||||||||||||||| | ||| |||||  || ||||| ||||||| || ||||| ||||||||||| |||       
T  36437377 tacacagtcagcgtgccacatcatctcattaatccagtcagaagacattagggggatacaccaaggaatctttatattacaggggggaatctccaagttt 36437278  T
Q  315 nnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
            || |||| || |||||||  ||||||||||||||||||||||||| ||||||||||||    
T  36437277 ttttttagtaggggggtaaaccaaaaaacccccaaatggcaggggggtaaaaggctattaacccta 36437212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 215 - 378
Target Start/End: Original strand, 36438664 - 36438828
Alignment:
Q  215 tacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnn 314  Q
    |||||| |||||  ||||||||| |||| | ||||||||||||| | | ||||| || |||||||||||||| |||||||| ||||||||||| |||       
T  36438664 tacacaatcagcaagccacatcatctcagttatccagtcagatgaccttaggggggtgaaccaaagaatctttattttacaggggggaatctccaagttt 36438763  T
Q  315 nnnnnngataggggt-tataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
            ||||||  || |||||||| |||||||||||||||||||||||||||||||||||||    
T  36438764 ttttttcgtaggggggtaaaccaaaagacccccaaatggcaggggggtaaaagcctattaaccct 36438828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 267 - 378
Target Start/End: Original strand, 9239077 - 9239186
Alignment:
Q  267 ggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngataggggttataccaaaagtcccccaaatggcaggggggtaaaag 366  Q
    ||||||||||||| ||||||||||||||| ||||||||||| ||          || ||||| ||| ||||||||||||||||||||||| |||||||||    
T  9239077 ggtgtaaaccaaataatcttcattttaca-gggggaatctccaa-aaaaaaattgacagggggtatcccaaaagtcccccaaatggcaggagggtaaaag 9239174  T
Q  367 cctattaaccct 378  Q
     |||||||||||    
T  9239175 tctattaaccct 9239186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 264 - 378
Target Start/End: Original strand, 37086681 - 37086796
Alignment:
Q  264 aggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngataggggt-tataccaaaagtcccccaaatggcaggggggta 362  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||| |||          |||||||  || |||||||| | | |||||||||||||||||    
T  37086681 aggggggtaaaccaaagaatctttattttacaggggggaatctccaagtttttttttcataggggggtaaaccaaaagacgctcaaatggcaggggggta 37086780  T
Q  363 aaagcctattaaccct 378  Q
    ||||||||||||||||    
T  37086781 aaagcctattaaccct 37086796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 264 - 365
Target Start/End: Original strand, 34801331 - 34801433
Alignment:
Q  264 aggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggta 362  Q
    ||||| ||||||||||||||||| |||||||||||||||||||| |||          ||| |||| || |||||||| |||||||||||||||||||||    
T  34801331 aggggggtaaaccaaagaatctttattttacaagggggaatctccaagtttttttttcataggggggtaaaccaaaagacccccaaatggcaggggggta 34801430  T
Q  363 aaa 365  Q
    |||    
T  34801431 aaa 34801433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 184 - 307
Target Start/End: Original strand, 39606496 - 39606619
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| ||||| ||||  ||||  ||||||||||||  ||||||||| || | | |  |||||||||||  ||||||    ||||||||||||    
T  39606496 tatgacgtgtcagtgccacttcatccatcgttacacagtcagcacgccacatcaactaaattacacagtcagatggactcagggtccaaaaccaaagaat 39606595  T
Q  284 cttcattttacaagggggaatctc 307  Q
    ||||||||| ||||||||||||||    
T  39606596 cttcattttgcaagggggaatctc 39606619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 15439689 - 15439735
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||    
T  15439689 accaaaagacccccaaatggcgggggggtaaaagcctattaacccta 15439735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 11150315 - 11150270
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  11150315 accaaaaatcccccaaatggctggggggtaaaagcctattaaccct 11150270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 15438522 - 15438469
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||| ||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  15438522 gggggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaaccct 15438469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 34825842 - 34825793
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatc-ttttaacataatttt 162  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  34825842 aatttatcattaagggtattttaggtatttcatctttttaacataatttt 34825793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 42278465 - 42278510
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||    
T  42278465 accaaaagacccccaaatggtaggggggtaaaagcctattaaccct 42278510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 46652726 - 46652775
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatc-ttttaacataatttt 162  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  46652726 aatttatcattaagggtattttaggtatttcatctttttaacataatttt 46652775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 217 - 293
Target Start/End: Complemental strand, 54672789 - 54672714
Alignment:
Q  217 cacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcatttta 293  Q
    |||| |||||||||||||||| | |||||||||||||| ||||  | | ||||||||| ||||||||||||||||||    
T  54672789 cacaatcagcgtgccacatcatcccattaatccagtcatatggtttga-gggtgtaaatcaaagaatcttcatttta 54672714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 322 - 380
Target Start/End: Complemental strand, 48537905 - 48537849
Alignment:
Q  322 ataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    ||||||| || |||||||| |||||||||||||  ||||||||||||||||||||||||    
T  48537905 atagggggtaaaccaaaagacccccaaatggca--ggggtaaaagcctattaaccctat 48537849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Complemental strand, 30034658 - 30034613
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||| ||| |||||||||||||||||||||| ||||||||||||    
T  30034658 accaaatgtcgcccaaatggcaggggggtaaaaccctattaaccct 30034613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 379
Target Start/End: Complemental strand, 37085526 - 37085411
Alignment:
Q  264 aggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngata-ggggttataccaaaagtcccccaaatggcaggggggta 362  Q
    ||||| ||||||||||||||||| |||||||| ||||||||||| |||          ||| |||| || |||||||| | |||||||||||||||| ||    
T  37085526 aggggggtaaaccaaagaatctttattttacaggggggaatctccaagttttttttc-ataggggggtaaaccaaaagacgcccaaatggcagggggata 37085428  T
Q  363 aaagcctattaacccta 379  Q
    ||| |||||||||||||    
T  37085427 aaaacctattaacccta 37085411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 52043327 - 52043406
Alignment:
Q  226 cgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatct 306  Q
    |||||||||||| |||||| ||||||||||||| | |  ||||||||||||||| |||||| || || ||| |||||||||    
T  52043327 cgtgccacatcatctcattgatccagtcagatgac-ttgggggtgtaaaccaaataatcttgatatttcaaaggggaatct 52043406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 13865962 - 13866009
Alignment:
Q  330 tataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    ||||||||||| ||||||||||| |||||  |||||||||||||||||||    
T  13865962 tataccaaaagacccccaaatggtagggg--taaaagcctattaacccta 13866009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 148
Target Start/End: Complemental strand, 37085679 - 37085645
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatct 148  Q
    |||||||| ||||||||||||||||||||||||||    
T  37085679 aatttatcattaagggtattttaggtatttcatct 37085645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 265 - 307
Target Start/End: Original strand, 52092839 - 52092881
Alignment:
Q  265 ggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    |||||||||| ||||||||||| ||||||||||| ||||||||    
T  52092839 ggggtgtaaatcaaagaatctttattttacaaggaggaatctc 52092881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 39606639 - 39606692
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||| || |||||||| |  ||||||||||||||||||||||||| ||||||||    
T  39606639 ggggataaaccaaaagacttccaaatggcaggggggtaaaagccttttaaccct 39606692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 306
Target Start/End: Complemental strand, 52042241 - 52042184
Alignment:
Q  249 cagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatct 306  Q
    |||||||||| ||| |||| || ||||||||||||||  |||||| ||||||||||||    
T  52042241 cagtcagatgccataagggttgaaaaccaaagaatctaaattttagaagggggaatct 52042184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 247 - 307
Target Start/End: Original strand, 13865880 - 13865939
Alignment:
Q  247 tccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    |||||||| |||  ||||||| || ||||||||||||||||||||||  ||||||||||||    
T  13865880 tccagtcacatgctatcagggttgaaaaccaaagaatcttcatttta-tagggggaatctc 13865939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 619 - 647
Target Start/End: Original strand, 19930895 - 19930923
Alignment:
Q  619 gtgcgctaataggccgtacgcgtgcctgg 647  Q
    |||||||||||||||||||||||||||||    
T  19930895 gtgcgctaataggccgtacgcgtgcctgg 19930923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 311
Target Start/End: Complemental strand, 48538052 - 48537918
Alignment:
Q  186 tgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcaga----------tggcatcaggggtgtaaac 275  Q
    |||||||||| ||||| ||||  ||||| |||||||||||| ||||| |||| |  ||| |||||||||||          |||| | ||||| ||||||    
T  48538052 tgacgtgtcagtgccacttcagccatcattacacagtcagcatgccaaatcatcaaatttatccagtcagatgctgactgttggcgttaggggggtaaac 48537953  T
Q  276 caaagaatcttcattttacaagggggaatctctaag 311  Q
    ||||||||||| ||||||||| |||||||||| |||    
T  48537952 caaagaatctttattttacaa-ggggaatctccaag 48537918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 84; Significance: 1e-39; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 184 - 299
Target Start/End: Original strand, 29043482 - 29043597
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    |||||||||||| ||||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||    
T  29043482 tatgacgtgtcagtgccatttcatccattactacacaatcagcgtgccacatcagctcattaatccagtcagatgacatcaagggtgtaaaccaaataat 29043581  T
Q  284 cttcattttacaaggg 299  Q
    ||||||||||||||||    
T  29043582 cttcattttacaaggg 29043597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 525 - 658
Target Start/End: Complemental strand, 19436511 - 19436378
Alignment:
Q  525 tggtatagcaagctatatgaagcaaagacacttatgtatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgttgtggtgcgc 624  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||| | ||||||| ||||||||||    
T  19436511 tggtgtagcaagctatatgaaccaaagacacttatgtatgttagcggtctaccactcgaatcacacccccacaattcttactgttaacgctgtggtgcgc 19436412  T
Q  625 taataggccgtacgcgtgcctggataattgatga 658  Q
    |||||||| || | ||| ||||| ||||| ||||    
T  19436411 taataggctgtgctcgtacctggttaattcatga 19436378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 249 - 379
Target Start/End: Complemental strand, 29042463 - 29042334
Alignment:
Q  249 cagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngataggggttataccaaaagtcccccaa 348  Q
    ||||||||| |  ||||| ||||||||||||||||||||||||| |||||||||||||| |||          ||||| | ||||||||||| |||||||    
T  29042463 cagtcagattggttcaggtgtgtaaaccaaagaatcttcatttttcaagggggaatctccaagttttttttttataggaggtataccaaaagacccccaa 29042364  T
Q  349 atggcaggggggtaaaagcctattaacccta 379  Q
    || ||| ||||||||||||||||||||||||    
T  29042363 atagca-gggggtaaaagcctattaacccta 29042334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 392 - 487
Target Start/End: Complemental strand, 19436587 - 19436490
Alignment:
Q  392 acatatttcaaaaattcaaaaattaatttagaaaacacttttt--gggtttatatcttggatgtaatgcatcaaactggtatagcaagctatatgaac 487  Q
    ||||||||||||| |||||||||||| |||||||| |  ||||  ||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||    
T  19436587 acatatttcaaaagttcaaaaattaaattagaaaataaattttctgggtttacatcttagatgtgatgcatcaaactggtgtagcaagctatatgaac 19436490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 29043419 - 29043468
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatc-ttttaacataatttt 162  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  29043419 aatttatcattaagggtattttaggtatttcatctttttaacataatttt 29043468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 332 - 377
Target Start/End: Complemental strand, 30776511 - 30776466
Alignment:
Q  332 taccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    |||||||||||| |||||||| ||||||||||||||||||||||||    
T  30776511 taccaaaagtcctccaaatggtaggggggtaaaagcctattaaccc 30776466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 222 - 310
Target Start/End: Original strand, 31916018 - 31916106
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaa 310  Q
    |||||||| ||||||| |||||||||   |||||||||| |  | |||||||||||||| ||||| || || ||||||||| |||||||    
T  31916018 tcagcgtggcacatcatctcattaattatgtcagatggcttgggaggtgtaaaccaaagtatcttgatgtttcaagggggagtctctaa 31916106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 325 - 380
Target Start/End: Original strand, 25650006 - 25650061
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccctat 380  Q
    |||| ||||||||||  | |||| || |||||||||||||||||||||||||||||    
T  25650006 ggggctataccaaaatacgcccatattgcaggggggtaaaagcctattaaccctat 25650061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 210 - 288
Target Start/End: Original strand, 25649888 - 25649966
Alignment:
Q  210 atcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttca 288  Q
    |||| |||||||||| |||||||| | |||| |||  |||||||| ||  ||||||||||  |||||||||||||||||    
T  25649888 atcaatacacagtcaacgtgccacctaagctaatttgtccagtcacataccatcaggggtcaaaaccaaagaatcttca 25649966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 215 - 294
Target Start/End: Original strand, 18775404 - 18775484
Alignment:
Q  215 tacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcag-gggtgtaaaccaaagaatcttcattttac 294  Q
    ||||||||||||   |||||||| || ||| ||||||||||||||| | || | | ||||||||||||||||| |||||||    
T  18775404 tacacagtcagcaaaccacatcatcttatttatccagtcagatggccttagagagggtaaaccaaagaatcttgattttac 18775484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 82; Significance: 2e-38; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 185 - 379
Target Start/End: Original strand, 23526628 - 23526824
Alignment:
Q  185 atgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatc 284  Q
    ||||||||||| ||||||||||| ||||||| |||| ||||| || |||||||||| || |||||||||||||||||||| |||||||||||||||||||    
T  23526628 atgacgtgtcagtgccatttcacccatcactgcacattcagcatgacacatcagcttatcaatccagtcagatggcatcatgggtgtaaaccaaagaatc 23526727  T
Q  285 ttcattttacaagggggaatctctaag-nnnnnnnnngataggggttataccaaaagtcccccaaatggcaggg-gggtaaaagcctattaacccta 379  Q
    ||||||||| | ||||||||||| |||          |  ||||| ||||||||||||| |||||||||  ||| ||||||||||||||||||||||    
T  23526728 ttcattttataggggggaatctccaagttttttttttgccagggggtataccaaaagtctcccaaatgggggggcgggtaaaagcctattaacccta 23526824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 221 - 300
Target Start/End: Original strand, 7849155 - 7849234
Alignment:
Q  221 gtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggg 300  Q
    |||||||||||| |||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  7849155 gtcagcgtgccatatcaactcattaatccagtcagatgacatcagggatgtaaaccaaagaatcttcattttacaagggg 7849234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 47578469 - 47578535
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatcca 250  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  47578469 tatgacgtgtcattgccatttcacccatcactacacagtcagcgtgccacatcagctcattaatcca 47578535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 262 - 378
Target Start/End: Complemental strand, 7848120 - 7848005
Alignment:
Q  262 tcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngataggggttataccaaaagtcccccaaatggcaggggggt 361  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||||          ||||||| ||||||||||| ||| || |||||||||||||    
T  7848120 tcaggggtgttagccagagaatcttcattttacaagggggaatctctaagttttttttt-atagggggtataccaaaagaccctcatatggcaggggggt 7848022  T
Q  362 aaaagcctattaaccct 378  Q
    ||||||| |||||||||    
T  7848021 aaaagcccattaaccct 7848005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 222 - 378
Target Start/End: Complemental strand, 21262137 - 21261979
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnn- 320  Q
    |||||| ||||||| |||| ||| ||||| ||| ||||  |  ||||||||||||||||||||| ||||||||||||||||||||| |||              
T  21262137 tcagcgcgccacataagctaatttatccaatcaaatggactgcggggtgtaaaccaaagaatctacattttacaagggggaatctccaagtttttttttt 21262038  T
Q  321 -gataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
     |   |||| ||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  21262037 tgcaggggggtataccaaaagacccctaaatggcaggggggtaaaagcctattaaccct 21261979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 222 - 377
Target Start/End: Complemental strand, 5737332 - 5737177
Alignment:
Q  222 tcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnng 321  Q
    |||||||||||||||| | |||||||| ||||||||||  |  |||||||||||||||||||||||   |  |||||||||||||  |||         |    
T  5737332 tcagcgtgccacatcatcacattaatctagtcagatggtttg-ggggtgtaaaccaaagaatcttctaatggcaagggggaatctacaagtttttttttg 5737234  T
Q  322 ataggggt-tataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    | |||||  ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  5737233 acaggggggtataccaaaaagcccccaaatggcaggggggtaaaagcctattaaccc 5737177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 5769308 - 5769360
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5769308 gggggtataccaaaagacccccaaatggcaggggggtaaaagcctattaaccc 5769360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 325 - 377
Target Start/End: Original strand, 47578587 - 47578639
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    |||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47578587 gggggtataccaaaagtctcccaaatggcaggggggtaaaagcctattaaccc 47578639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 23525633 - 23525580
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||| |||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  23525633 gggggtataccaaaaatcccccaaatggcagcggggtaaaagcctattaaccct 23525580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 264 - 378
Target Start/End: Original strand, 21263259 - 21263374
Alignment:
Q  264 aggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngataggggt-tataccaaaagtcccccaaatggcaggggggta 362  Q
    ||||| |||||||||||||||| ||||||||||||||||||||| |||            |||||  ||||||||||| |||||| |||||||||||||     
T  21263259 aggggggtaaaccaaagaatctacattttacaagggggaatctccaagttttttttttgcaggggggtataccaaaagacccccatatggcaggggggtg 21263358  T
Q  363 aaagcctattaaccct 378  Q
    ||||||||||||||||    
T  21263359 aaagcctattaaccct 21263374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 12628077 - 12628031
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||    
T  12628077 accaaaagacccgcaaatggcaggggggtaaaagcctattaacccta 12628031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 649
Target Start/End: Complemental strand, 2434383 - 2434250
Alignment:
Q  517 agtgaaattggtatagcaagctatatgaagcaaagacacttatg-tatgttagcggcctaccactcgcatcacacccccacaatccttgccgttaacgtt 615  Q
    |||||| ||||| |||||||||||||||| ||||  |||||    |||||||||||  ||| | |||||||||| ||| ||||| |||| ||||  || |    
T  2434383 agtgaagttggtgtagcaagctatatgaatcaaaatcacttggcatatgttagcggtatacaattcgcatcacatccctacaattcttgtcgttggcgct 2434284  T
Q  616 gtggtgcgctaataggccgtacgcgtgcctggat 649  Q
    || |||||| |||||||||| |||||||||||||    
T  2434283 gttgtgcgcgaataggccgtgcgcgtgcctggat 2434250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 333 - 378
Target Start/End: Original strand, 12629439 - 12629484
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||||||| |||  ||||||||||||||||||||||||||||||||    
T  12629439 accaaaagacccgtaaatggcaggggggtaaaagcctattaaccct 12629484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 455 - 543
Target Start/End: Complemental strand, 18017382 - 18017294
Alignment:
Q  455 atgcatcaaactggtatagcaagctatatgaactagtgctagaatgatagtacttaa-cacacagtgaaattggtatagcaagctatatg 543  Q
    ||||||| |||| || ||||||||| ||||||| |||  ||||||||||| |||||| ||||||||||||||| | ||||||| ||||||    
T  18017382 atgcatcgaactagtgtagcaagctctatgaacaagtattagaatgatag-acttaaacacacagtgaaattgatgtagcaagttatatg 18017294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 264 - 301
Target Start/End: Complemental strand, 23525702 - 23525665
Alignment:
Q  264 aggggtgtaaaccaaagaatcttcattttacaaggggg 301  Q
    |||||||||||||||||||||||||||||||| |||||    
T  23525702 aggggtgtaaaccaaagaatcttcattttacagggggg 23525665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 162
Target Start/End: Original strand, 47578399 - 47578448
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatc-ttttaacataatttt 162  Q
    |||||||| |||||||||||||| |||||||||| |||||||||||||||    
T  47578399 aatttatcattaagggtattttaagtatttcatctttttaacataatttt 47578448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 249 - 374
Target Start/End: Complemental strand, 47573219 - 47573094
Alignment:
Q  249 cagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctctaagnnnnnnnnngatagggg-ttataccaaaagtccccca 347  Q
    ||||||||| |  ||||||||| |||||||| ||||||||||||||||||  ||||||| |||          |||||||  ||||||||||| ||||||    
T  47573219 cagtcagattggttcaggggtgcaaaccaaaaaatcttcattttacaaggaagaatctccaagttttttttt-ataggggagtataccaaaagaccccca 47573121  T
Q  348 aatggcaggggggtaaaagcctattaa 374  Q
     ||  ||||||||||||||||||||||    
T  47573120 tataacaggggggtaaaagcctattaa 47573094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 7849051 - 7849097
Alignment:
Q  114 aatttatcgttaagggtattttaggtatttcatc-ttttaacataat 159  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||    
T  7849051 aatttatcattaagggtatttttggtatttcatctttttaacataat 7849097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 217 - 307
Target Start/End: Original strand, 23456571 - 23456661
Alignment:
Q  217 cacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    ||||||||||| ||||| | |||| |||  |||||||| ||| |||||||| |  ||||||||||||||| |  | |||||||||||||||    
T  23456571 cacagtcagcgcgccacctaagctaatttgtccagtcacatgtcatcagggttcaaaaccaaagaatctttaaatgacaagggggaatctc 23456661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 307
Target Start/End: Original strand, 19628126 - 19628163
Alignment:
Q  270 gtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    |||||||||| |||||| ||||||||||||||||||||    
T  19628126 gtaaaccaaataatctttattttacaagggggaatctc 19628163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 378
Target Start/End: Complemental strand, 6591315 - 6591268
Alignment:
Q  330 tataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    ||||||||||  || ||||||||||||||| ||||||||||||||||||    
T  6591315 tataccaaaataccaccaaatggcaggggg-taaaagcctattaaccct 6591268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 12629334 - 12629390
Alignment:
Q  229 gccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatct 285  Q
    ||||||||| | |||| |||||||||||||||   ||||| ||||||||||||||||    
T  12629334 gccacatcatcccatttatccagtcagatggcgctaggggggtaaaccaaagaatct 12629390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 307
Target Start/End: Original strand, 47578533 - 47578565
Alignment:
Q  275 ccaaagaatcttcattttacaagggggaatctc 307  Q
    ||||||||||||||||||| |||||||||||||    
T  47578533 ccaaagaatcttcattttaaaagggggaatctc 47578565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 184 - 287
Target Start/End: Complemental strand, 2951 - 2849
Alignment:
Q  184 tatgacgtgtcattgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaat 283  Q
    ||||||||||||  |||| |||||||||||   |||||||||| |||||||||||||||||||||||||||||| || |||||| || ||| ||||||||    
T  2951 tatgacgtgtcag-gccacttcactcatcatcgcacagtcagcatgccacatcagctcattaatccagtcagattgcctcagggttgaaaatcaaagaat 2853  T
Q  284 cttc 287  Q
    ||||    
T  2852 cttc 2849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 4379 - 4435
Alignment:
Q  322 ataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    ||||||| || |||||||| ||||||||||||| |||| ||||||||||||||||||    
T  4379 atagggggtaaaccaaaagacccccaaatggcaaggggataaaagcctattaaccct 4435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 9950 - 9862
Alignment:
Q  215 tacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaat 304  Q
    |||||||||| |  ||||||||| |||||||||||||||||||||  | ||||| ||||| ||||||||||| |||||||||||||||||    
T  9950 tacacagtcaacaagccacatcatctcattaatccagtcagatggtcttagggg-gtaaatcaaagaatctttattttacaagggggaat 9862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Original strand, 11264 - 11310
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||| |||||| ||||||||||||||||| |||||||||||||    
T  11264 accaaaagacccccatatggcaggggggtaaaaacctattaacccta 11310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 46; Significance: 7e-17; HSPs: 4)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 333 - 386
Target Start/End: Complemental strand, 430 - 377
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaaccctatataaaa 386  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  430 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccaaaataaaa 377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 324 - 378
Target Start/End: Original strand, 3924 - 3977
Alignment:
Q  324 aggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    ||||| || |||||||||||||||||||||| |||||||||||||||||||||||    
T  3924 aggggataaaccaaaagtcccccaaatggca-gggggtaaaagcctattaaccct 3977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 1176 - 1130
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||| ||| |||||||||||||||||||||  |||||||||||||    
T  1176 accaaatgtcgcccaaatggcaggggggtaaagccctattaacccta 1130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 377
Target Start/End: Original strand, 3418 - 3471
Alignment:
Q  324 aggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccc 377  Q
    ||||| || |||||| ||| |||||||||||||||||||||  |||||||||||    
T  3418 agggggtaaaccaaatgtcgcccaaatggcaggggggtaaagccctattaaccc 3471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 22502 - 22456
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||    
T  22502 accaaaagacccccaaatggcgggggggtaaaagcctattaacccta 22456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 325 - 378
Target Start/End: Original strand, 23669 - 23722
Alignment:
Q  325 ggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaaccct 378  Q
    |||| ||||||||||  ||| |||||||||||||||||||||||||||||||||    
T  23669 gggggtataccaaaaaaccctcaaatggcaggggggtaaaagcctattaaccct 23722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 10967 - 10876
Alignment:
Q  197 tgccatttcactcatcactacacagtcagcgtgccacatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttca 288  Q
    ||||| |||| | |||| ||||||||||||||||||| | |||| |||  |||||||| | | ||||||||||  |||||||||||||||||    
T  10967 tgccacttcattgatcaatacacagtcagcgtgccacctaagctaatttgtccagtcacacgtcatcaggggtcaaaaccaaagaatcttca 10876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 232 - 307
Target Start/End: Complemental strand, 28924 - 28850
Alignment:
Q  232 acatcagctcattaatccagtcagatggcatcaggggtgtaaaccaaagaatcttcattttacaagggggaatctc 307  Q
    |||||| |||||||||||||||||||| ||| ||||| ||| ||||| ||||||| || |||| ||||||||||||    
T  28924 acatcatctcattaatccagtcagatgacattaggggggtacaccaaggaatctttatattac-agggggaatctc 28850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0408 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0408
Description:

Target: scaffold0408; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 333 - 379
Target Start/End: Complemental strand, 10129 - 10085
Alignment:
Q  333 accaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||| |||||||||||||||||  |||||||||||||||||||    
T  10129 accaaaagacccccaaatggcagggg--taaaagcctattaacccta 10085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0484 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0484
Description:

Target: scaffold0484; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 321 - 379
Target Start/End: Complemental strand, 11591 - 11534
Alignment:
Q  321 gataggggttataccaaaagtcccccaaatggcaggggggtaaaagcctattaacccta 379  Q
    |||||||| ||  ||||||| | |||||||||||||||| |||||||||||||||||||    
T  11591 gatagggggtaatccaaaagactcccaaatggcaggggg-taaaagcctattaacccta 11534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University