View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11572_high_11 (Length: 203)
Name: NF11572_high_11
Description: NF11572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11572_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 129; Significance: 6e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 44685081 - 44684910
Alignment:
| Q |
17 |
aaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcatttttct |
116 |
Q |
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| T |
44685081 |
aaaagatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcatttttct |
44684982 |
T |
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| Q |
117 |
atctttagttattaagttatctaaac-aaaacnnnnnnnnntcattttcttcttcattaaatttttcattct |
187 |
Q |
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|| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
44684981 |
atatttagttattaagttatctaaacaaaaaaaaaaaaaaatcattttcttcttcattaaatttttcattct |
44684910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 20 - 124
Target Start/End: Complemental strand, 44662664 - 44662558
Alignment:
| Q |
20 |
agatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttc--atttttcta |
117 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||| | ||||||||||||||| |||||||||||| ||||||||| |
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| T |
44662664 |
agatgccaatttggatgcaataattgctcactatgctcagactataaccaagtacaacatgcgtaacttaggtaggcttttggtgcttcatatttttcta |
44662565 |
T |
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| Q |
118 |
tctttag |
124 |
Q |
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||||||| |
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| T |
44662564 |
tctttag |
44662558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 29339642 - 29339750
Alignment:
| Q |
21 |
gatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcatttttctatct |
120 |
Q |
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||||||||||| |||||| ||||| ||| ||||| |||||||||||||||||||||||| || ||||||||| || ||||| ||||| |||||||||||| |
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| T |
29339642 |
gatgccaatttagatgcagtaattactcactatgtggagactataaacaagtacaacttgcgcaacttaggtgggtttttgatgcttgatttttctatct |
29339741 |
T |
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| Q |
121 |
ttagttatt |
129 |
Q |
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|||| |||| |
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| T |
29339742 |
ttagatatt |
29339750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 29352804 - 29352899
Alignment:
| Q |
21 |
gatgccaatttggatgcaataattgctcgctatgcggagactataaacaagtacaacttacgtaacttaggtagggttttggtgcttcatttttct |
116 |
Q |
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||||||||||| |||||| ||||||||| ||||| ||||||||||||||| |||||||| |||||||||||||| ||||| ||||| |||||||| |
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| T |
29352804 |
gatgccaatttagatgcagtaattgctcactatgtggagactataaacaaatacaacttgtgtaacttaggtaggtttttgatgcttgatttttct |
29352899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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