View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11572_high_2 (Length: 598)
Name: NF11572_high_2
Description: NF11572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11572_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 131 - 588
Target Start/End: Complemental strand, 40018116 - 40017654
Alignment:
| Q |
131 |
aggattagctggagttacgaattcagttcatgcttatgatgttgattcnnnnnnntggactaggttcgttcattcattttgaaattcagcttcannnnnn |
230 |
Q |
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| T |
40018116 |
aggattagctggagttacgaattcagttcatgcttatgatgttgattcaaaaaaatggactaggttcgttcattcattttgaaattcagcttcatttttt |
40018017 |
T |
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| Q |
231 |
nnncttgttgttgttgtta------gttgaattgaattgctagtcaagtaactgtgtttgttttatgttatgatgatgtttaggattaaaccggccggag |
324 |
Q |
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| T |
40018016 |
gttgttgttgttgttgttattgttagttgaattgaattgctagtcaagtaactgtgtttgttttatgttatgatgatgtttaggattaaaccggccggag |
40017917 |
T |
|
| Q |
325 |
acccgccctctcctcgagctgctcatgccgcagccaccgttggcacaatggttgtttttcaggtgattatgtgattaaattttgatgatactttctcttt |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40017916 |
acccgccctctcctcgagctgctcatgccgcagccaccgttggcacaatggttgtttttcaggtgattatgtgattaaattttgatgatactttctcttt |
40017817 |
T |
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| Q |
425 |
tacttggttggtttgtattgatacggtgttatgacttaacatatctgtttgtttggtgcttgattggttctgcatggctagggtgggataggtccggccg |
524 |
Q |
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| T |
40017816 |
tacttggttggtttgtattgatacggtgttatgacttaacatatctgtttgtttggtgctttattggttctgcatggctagggtgggataggtccggccg |
40017717 |
T |
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| Q |
525 |
ggcattctactgatgatctcgatgtccatctcattgaccaatgataaatacaaatgccacaggt |
588 |
Q |
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| T |
40017716 |
ggcattctactgatgatctctatgtgcttgac-ttgaccaatgataaatacaaatggcacaggt |
40017654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 60
Target Start/End: Complemental strand, 40018228 - 40018187
Alignment:
| Q |
19 |
aggatctacttcagctcctggcattcgtaataatcttctatc |
60 |
Q |
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| T |
40018228 |
aggatctacttcagctcctggcattcgtaataatcttctatc |
40018187 |
T |
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