View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11572_high_4 (Length: 439)

Name: NF11572_high_4
Description: NF11572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11572_high_4
NF11572_high_4
[»] chr4 (40 HSPs)
chr4 (19-340)||(3039011-3039328)
chr4 (168-238)||(624533-624603)
chr4 (168-260)||(34353810-34353902)
chr4 (168-238)||(28715743-28715813)
chr4 (168-270)||(55521410-55521512)
chr4 (168-260)||(4958503-4958595)
chr4 (168-260)||(21935508-21935600)
chr4 (173-236)||(3161077-3161140)
chr4 (172-243)||(3784959-3785029)
chr4 (182-253)||(7513342-7513413)
chr4 (179-238)||(36099141-36099200)
chr4 (168-258)||(17815373-17815462)
chr4 (168-238)||(23778772-23778842)
chr4 (168-253)||(12775186-12775271)
chr4 (168-253)||(29505682-29505767)
chr4 (169-238)||(31187488-31187557)
chr4 (201-265)||(2629605-2629669)
chr4 (168-235)||(13551056-13551121)
chr4 (188-260)||(13578432-13578504)
chr4 (168-260)||(30057253-30057345)
chr4 (168-260)||(35207098-35207190)
chr4 (179-262)||(23176680-23176762)
chr4 (179-238)||(30305852-30305911)
chr4 (172-243)||(38848072-38848142)
chr4 (168-238)||(1817227-1817296)
chr4 (168-242)||(10417168-10417242)
chr4 (179-237)||(13976277-13976335)
chr4 (168-270)||(21432635-21432737)
chr4 (201-243)||(23695132-23695174)
chr4 (168-238)||(42395280-42395350)
chr4 (168-238)||(56087901-56087971)
chr4 (168-237)||(2870938-2871006)
chr4 (168-237)||(15064149-15064218)
chr4 (189-270)||(41137888-41137969)
chr4 (179-288)||(47890698-47890807)
chr4 (168-260)||(8965125-8965217)
chr4 (200-288)||(11294817-11294905)
chr4 (179-291)||(29406357-29406468)
chr4 (201-237)||(31852403-31852439)
chr4 (169-205)||(56298065-56298101)
[»] chr2 (29 HSPs)
chr2 (179-282)||(15939298-15939401)
chr2 (168-228)||(9985066-9985126)
chr2 (168-223)||(41492754-41492809)
chr2 (189-238)||(20497163-20497212)
chr2 (173-262)||(23984175-23984264)
chr2 (168-260)||(7379548-7379639)
chr2 (179-243)||(11268337-11268401)
chr2 (168-288)||(33041810-33041930)
chr2 (168-243)||(34391453-34391529)
chr2 (179-262)||(5947895-5947978)
chr2 (168-290)||(10058869-10058992)
chr2 (179-238)||(14518337-14518396)
chr2 (168-238)||(32854585-32854655)
chr2 (196-253)||(17777138-17777195)
chr2 (196-237)||(24374251-24374292)
chr2 (172-268)||(3596273-3596368)
chr2 (171-291)||(39635300-39635420)
chr2 (169-288)||(36748890-36749008)
chr2 (168-238)||(28153089-28153159)
chr2 (168-238)||(37486880-37486950)
chr2 (201-270)||(20919631-20919700)
chr2 (168-253)||(43936739-43936824)
chr2 (179-223)||(18254657-18254701)
chr2 (168-260)||(22653591-22653683)
chr2 (201-289)||(29942106-29942194)
chr2 (168-260)||(33228880-33228972)
chr2 (189-237)||(33587143-33587191)
chr2 (168-240)||(35429556-35429628)
chr2 (189-253)||(38525521-38525585)
[»] chr3 (41 HSPs)
chr3 (168-262)||(25883935-25884029)
chr3 (172-268)||(46817303-46817398)
chr3 (179-262)||(15085642-15085725)
chr3 (180-270)||(14795132-14795222)
chr3 (169-237)||(4807993-4808061)
chr3 (174-238)||(49028896-49028960)
chr3 (179-238)||(9685049-9685107)
chr3 (168-223)||(12007088-12007143)
chr3 (179-238)||(27329890-27329949)
chr3 (179-238)||(41253707-41253766)
chr3 (179-238)||(41710636-41710695)
chr3 (179-238)||(44625183-44625242)
chr3 (179-238)||(51879148-51879207)
chr3 (168-290)||(53432684-53432806)
chr3 (168-221)||(16231839-16231892)
chr3 (169-238)||(32256502-32256571)
chr3 (168-253)||(32732484-32732569)
chr3 (173-262)||(35200584-35200673)
chr3 (169-217)||(16991910-16991958)
chr3 (168-236)||(24430204-24430272)
chr3 (213-253)||(27119311-27119351)
chr3 (189-260)||(31586978-31587049)
chr3 (172-223)||(36666528-36666579)
chr3 (201-260)||(40192187-40192246)
chr3 (179-269)||(2106046-2106136)
chr3 (179-221)||(10350581-10350623)
chr3 (180-262)||(23090282-23090364)
chr3 (200-238)||(43280121-43280159)
chr3 (168-237)||(4860215-4860284)
chr3 (168-237)||(4880223-4880292)
chr3 (201-238)||(5173990-5174027)
chr3 (201-270)||(29098713-29098782)
chr3 (201-238)||(38949727-38949764)
chr3 (168-260)||(11206021-11206113)
chr3 (171-223)||(15792277-15792329)
chr3 (168-228)||(15975355-15975415)
chr3 (168-260)||(17729022-17729114)
chr3 (168-260)||(19030251-19030343)
chr3 (213-253)||(28951901-28951941)
chr3 (168-260)||(39719966-39720058)
chr3 (168-260)||(41936354-41936446)
[»] chr5 (34 HSPs)
chr5 (168-236)||(885105-885173)
chr5 (190-260)||(7545367-7545437)
chr5 (169-240)||(25460728-25460800)
chr5 (179-262)||(33909034-33909117)
chr5 (179-253)||(3740992-3741066)
chr5 (168-238)||(41179750-41179820)
chr5 (168-238)||(42916442-42916512)
chr5 (179-260)||(8241081-8241162)
chr5 (168-260)||(36124430-36124522)
chr5 (179-238)||(3821379-3821438)
chr5 (168-235)||(6734686-6734752)
chr5 (189-288)||(18473810-18473909)
chr5 (179-262)||(28871282-28871365)
chr5 (168-239)||(34434247-34434318)
chr5 (168-223)||(39799977-39800032)
chr5 (168-270)||(27545098-27545200)
chr5 (168-237)||(16891400-16891469)
chr5 (180-237)||(28553874-28553931)
chr5 (172-235)||(28822708-28822770)
chr5 (168-260)||(15241427-15241519)
chr5 (182-262)||(30208962-30209042)
chr5 (201-236)||(4054234-4054269)
chr5 (179-238)||(23937891-23937950)
chr5 (168-270)||(4068003-4068104)
chr5 (168-238)||(12891610-12891679)
chr5 (173-238)||(17891810-17891876)
chr5 (168-238)||(43580931-43581001)
chr5 (189-253)||(6735757-6735821)
chr5 (179-223)||(7443407-7443451)
chr5 (168-260)||(11897279-11897371)
chr5 (168-236)||(33372949-33373016)
chr5 (189-253)||(36564390-36564454)
chr5 (168-260)||(36888342-36888434)
chr5 (208-288)||(41083525-41083604)
[»] chr1 (45 HSPs)
chr1 (173-253)||(18911889-18911969)
chr1 (168-238)||(18512522-18512592)
chr1 (174-238)||(13763814-13763878)
chr1 (196-236)||(16182253-16182293)
chr1 (168-236)||(36313927-36313994)
chr1 (168-260)||(37662504-37662596)
chr1 (179-285)||(569622-569728)
chr1 (189-260)||(36860629-36860700)
chr1 (168-238)||(8741526-8741596)
chr1 (168-238)||(12404408-12404478)
chr1 (168-238)||(40101878-40101948)
chr1 (180-262)||(42735910-42735992)
chr1 (173-238)||(21247696-21247761)
chr1 (168-260)||(2754391-2754483)
chr1 (172-260)||(9866135-9866223)
chr1 (168-271)||(19063280-19063383)
chr1 (201-260)||(24910458-24910517)
chr1 (201-236)||(25069538-25069573)
chr1 (189-260)||(27234018-27234089)
chr1 (179-262)||(33200068-33200151)
chr1 (171-258)||(35283534-35283621)
chr1 (196-270)||(50103881-50103956)
chr1 (168-238)||(3229661-3229731)
chr1 (168-238)||(12048071-12048141)
chr1 (211-269)||(33843185-33843243)
chr1 (211-269)||(33950736-33950794)
chr1 (168-253)||(12650331-12650416)
chr1 (179-224)||(27094287-27094332)
chr1 (173-270)||(28653306-28653403)
chr1 (168-285)||(36795156-36795273)
chr1 (187-228)||(40520346-40520387)
chr1 (179-260)||(42490368-42490449)
chr1 (201-270)||(43021602-43021671)
chr1 (201-238)||(45416158-45416195)
chr1 (168-253)||(47642929-47643014)
chr1 (201-286)||(50118977-50119062)
chr1 (169-258)||(50746744-50746833)
chr1 (213-270)||(52202283-52202340)
chr1 (213-253)||(2903047-2903087)
chr1 (168-260)||(10664742-10664833)
chr1 (168-260)||(21265687-21265779)
chr1 (172-236)||(28503481-28503544)
chr1 (201-237)||(34562767-34562803)
chr1 (189-237)||(45371767-45371815)
chr1 (168-260)||(48897064-48897156)
[»] chr6 (26 HSPs)
chr6 (168-262)||(18904294-18904388)
chr6 (168-260)||(7545360-7545452)
chr6 (186-262)||(7897083-7897159)
chr6 (171-235)||(31980909-31980973)
chr6 (179-238)||(32621540-32621599)
chr6 (168-282)||(6196296-6196410)
chr6 (168-238)||(19618673-19618743)
chr6 (171-228)||(29619160-29619217)
chr6 (248-288)||(9329701-9329741)
chr6 (168-260)||(28222894-28222985)
chr6 (182-245)||(9689265-9689327)
chr6 (179-238)||(32616437-32616496)
chr6 (200-251)||(34574133-34574184)
chr6 (168-238)||(22574923-22574993)
chr6 (168-288)||(978083-978201)
chr6 (199-260)||(2251869-2251930)
chr6 (201-238)||(12524966-12525003)
chr6 (213-265)||(22389770-22389823)
chr6 (247-288)||(24373730-24373771)
chr6 (168-237)||(30504534-30504602)
chr6 (189-253)||(10483504-10483568)
chr6 (208-260)||(15091479-15091531)
chr6 (213-265)||(20568277-20568329)
chr6 (186-270)||(20846067-20846151)
chr6 (169-217)||(29646699-29646747)
chr6 (174-238)||(32141989-32142053)
[»] chr8 (39 HSPs)
chr8 (174-269)||(7948394-7948488)
chr8 (168-262)||(34873115-34873209)
chr8 (168-237)||(32258061-32258130)
chr8 (168-260)||(11406626-11406718)
chr8 (204-260)||(26192699-26192755)
chr8 (168-260)||(27077044-27077136)
chr8 (180-268)||(30300352-30300440)
chr8 (168-223)||(26217859-26217914)
chr8 (179-238)||(31024347-31024406)
chr8 (168-263)||(33810668-33810763)
chr8 (179-262)||(36035137-36035220)
chr8 (168-238)||(21548444-21548514)
chr8 (179-237)||(44053398-44053456)
chr8 (201-270)||(30676284-30676353)
chr8 (213-253)||(220382-220422)
chr8 (213-253)||(689537-689577)
chr8 (213-253)||(734005-734045)
chr8 (213-253)||(857901-857941)
chr8 (189-289)||(13105093-13105193)
chr8 (168-260)||(17072510-17072602)
chr8 (168-260)||(17575669-17575761)
chr8 (168-264)||(42801596-42801692)
chr8 (168-236)||(44615735-44615803)
chr8 (169-260)||(2792810-2792901)
chr8 (186-253)||(36540325-36540392)
chr8 (208-291)||(37535486-37535569)
chr8 (179-238)||(37708744-37708803)
chr8 (179-265)||(550327-550412)
chr8 (191-253)||(9813011-9813073)
chr8 (202-260)||(10083194-10083252)
chr8 (168-238)||(13059124-13059194)
chr8 (168-238)||(24517348-24517418)
chr8 (189-238)||(8183373-8183422)
chr8 (168-253)||(9187170-9187255)
chr8 (178-231)||(29547424-29547477)
chr8 (168-216)||(2426427-2426475)
chr8 (208-260)||(8265299-8265351)
chr8 (196-236)||(34761022-34761062)
chr8 (174-238)||(40904584-40904648)
[»] chr7 (34 HSPs)
chr7 (168-237)||(18503427-18503496)
chr7 (168-223)||(4232550-4232605)
chr7 (182-265)||(28735187-28735270)
chr7 (179-238)||(40200770-40200828)
chr7 (201-243)||(22548259-22548301)
chr7 (168-226)||(28501222-28501280)
chr7 (173-262)||(47440762-47440851)
chr7 (168-235)||(9684678-9684743)
chr7 (188-260)||(9712165-9712237)
chr7 (189-260)||(12428221-12428293)
chr7 (168-223)||(28800154-28800210)
chr7 (208-260)||(30940802-30940854)
chr7 (201-260)||(41465865-41465924)
chr7 (179-262)||(46758271-46758354)
chr7 (202-260)||(1398884-1398942)
chr7 (168-238)||(15639375-15639445)
chr7 (168-238)||(24061276-24061346)
chr7 (179-288)||(29461773-29461882)
chr7 (181-235)||(35005457-35005511)
chr7 (178-236)||(37710140-37710198)
chr7 (179-265)||(41331038-41331123)
chr7 (168-214)||(42433039-42433085)
chr7 (188-238)||(42798284-42798334)
chr7 (168-237)||(10901699-10901768)
chr7 (171-260)||(33996831-33996920)
chr7 (247-288)||(43404309-43404350)
chr7 (189-238)||(46645762-46645811)
chr7 (189-238)||(47999833-47999882)
chr7 (198-262)||(20101629-20101693)
chr7 (168-260)||(28424278-28424370)
chr7 (168-223)||(28799967-28800023)
chr7 (168-252)||(28805339-28805423)
chr7 (189-253)||(41913732-41913796)
chr7 (189-264)||(43159316-43159389)
[»] scaffold0003 (1 HSPs)
scaffold0003 (169-236)||(315704-315771)
[»] scaffold0038 (1 HSPs)
scaffold0038 (168-260)||(23392-23483)
[»] scaffold0250 (1 HSPs)
scaffold0250 (201-270)||(15026-15095)
[»] scaffold0148 (1 HSPs)
scaffold0148 (192-237)||(9247-9292)
[»] scaffold0088 (1 HSPs)
scaffold0088 (168-260)||(10773-10865)
[»] scaffold0010 (1 HSPs)
scaffold0010 (179-243)||(236316-236379)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 3039011 - 3039328
Alignment:
Q  19 ctaaagacacatattagggtttcacaaagaacaaatatttattgaaaaaggnnnnnnnnntcaagaaataatatattgacttgaatttacggtacatagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||   |||||||||||||||||||||||||||    
T  3039011 ctaaagacacatattagggtttcacaaagaacaaatatttattgaaaaagaaaataaaaatcaagaaata---tattgacttgaatttacggtacatagt 3039107  T
Q  119 ttctacttttttgccaagcagtttaatggctgaaactctacnnnnnnnngtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtgg 218  Q
    ||||||||||| | |||| ||||||||||||||||||||||        ||||||||||||||||||||||||||| |||||||||||||| |||||||     
T  3039108 ttctacttttt-gtcaagtagtttaatggctgaaactctacttttttttgtcaagtagtttagtggttgaagctcacacattttaaatatgaagaagtga 3039206  T
Q  219 ggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgagttaaactcacagacactcatagtttctacttttagtatac 318  Q
    | |||| ||||||| |||||||||||| |||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||    
T  3039207 gctgtttgggattcaaaccctgacctctgcatatactatgcattgtctctaccgactgagttaaactcacaaacactcatagtttctacttttagtatac 3039306  T
Q  319 tgagatgtgtcctaagagcaca 340  Q
    | ||||||| ||||||||||||    
T  3039307 taagatgtgccctaagagcaca 3039328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 624603 - 624533
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||||||||||||  |||||| ||||||||||| ||||||||||||||||  ||| |||||||||    
T  624603 gtcaagtagtttagtggttagagctcacacattttaaatgtggagaagtggggtgtcaggggttcgaaccc 624533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 34353902 - 34353810
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  ||||||||  |||||| | | ||||| | |||||||||||||||| |||| |||||||||||||||| ||||||| ||||||    
T  34353902 gtcaagtagcctagtggttacagctcacataatttaattgtggagaagtggggtgtccggggttcgaaccctgacctctgcatataatatgca 34353810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 28715813 - 28715743
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||| ||||| |||||| ||||||||| ||||||||||| ||||||||||| |||| |||| |||||||||    
T  28715813 gtcaggtagtctagtggctgaagctcacacattttaaatgtggagaagtggagtgtccggggttcgaaccc 28715743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 55521410 - 55521512
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    ||||||||||||||||| ||||| | | ||||||||||| || |||||||| ||||| ||| |||||| || |||||| ||||||| ||| || |||| |    
T  55521410 gtcaagtagtttagtggctgaagtttacacattttaaatgtgaagaagtggagtgtttggggttcgaatcccgacctctgcatataatatacaatgtccc 55521509  T
Q  268 tac 270  Q
    |||    
T  55521510 tac 55521512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 4958503 - 4958595
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||||||||||||| ||||||| | | ||||| | ||||||||||| |||| |||| ||||||||| |||  | ||||||| ||||||    
T  4958503 gtcaagtagtttagtggttaaagctcacataatttaattgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgca 4958595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 21935600 - 21935508
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| |||||| | ||||||| ||| ||||| | |||||||||||||||| |||| ||||||||| | || | ||||||| ||||||    
T  21935600 gtcaagtagtctagtggctaaagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgca 21935508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 3161140 - 3161077
Alignment:
Q  173 gtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    |||||||||||| || |||||| ||||||||||| ||||||||||  |||| ||||||||||||    
T  3161140 gtagtttagtggctgtagctcacacattttaaatgtggagaagtgaagtgtccgggattcgaac 3161077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 243
Target Start/End: Complemental strand, 3785029 - 3784959
Alignment:
Q  172 agtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacc 243  Q
    |||||| |||||| || |||||| |||||| |||| |||||||||| |||||||||| ||||||||||||||    
T  3785029 agtagtctagtggctggagctcacacattt-aaatgtggagaagtgtggtgttcggggttcgaaccctgacc 3784959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 253
Target Start/End: Original strand, 7513342 - 7513413
Alignment:
Q  182 tggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||| ||||||  |||||||||| ||||||||||| |||| |||| |||||||||||||| | |||||||    
T  7513342 tggttggagctcacgcattttaaatgtggagaagtggagtgtccggggttcgaaccctgacccctgcatata 7513413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 36099141 - 36099200
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| |||||||||||||||| |||| |||||||||    
T  36099141 tagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 36099200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 258
Target Start/End: Original strand, 17815373 - 17815462
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatg 258  Q
    ||||||||| ||||||| | ||||||| |||| | |||||||||||||| ||||||  ||||||||||||| |||| | ||||||| ||||    
T  17815373 gtcaagtagcttagtggctaaagctcacacatat-aaatatggagaagtagggtgtcagggattcgaaccccgacccctgcatataatatg 17815462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 23778772 - 23778842
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||||||||||||  |||||| ||| ||||| | ||||||||||||||||  ||| |||||||||    
T  23778772 gtcaagtagtttagtggttagagctcacacaatttaattgtggagaagtggggtgtctggggttcgaaccc 23778842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 12775186 - 12775271
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||| |||||| | ||||||| ||| ||||| | ||||||||||| |||| | | ||||||||||||||| | |||||||    
T  12775186 gtcaagtagtctagtgggtaaagctcacacaatttaattgtggagaagtggagtgtccagaattcgaaccctgacccctgcatata 12775271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 29505682 - 29505767
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    ||||||||||||||||| |  |||||| ||| ||||| | | ||||||||| |||| |||||||||||||| | |||| |||||||    
T  29505682 gtcaagtagtttagtggctagagctcacacaatttaattgtcgagaagtggagtgtccgggattcgaaccccggcctctgcatata 29505767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 31187488 - 31187557
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||| |||||||||||||  |||||| ||||||||||| |||| |||||| ||||  |||||||||||||    
T  31187488 tcaaatagtttagtggttagagctcacacattttaaatgtggataagtggagtgtctgggattcgaaccc 31187557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 265
Target Start/End: Complemental strand, 2629669 - 2629605
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtc 265  Q
    |||||| ||||||||||||||||||||| ||||||||| |||| | ||||| | |||||| ||||    
T  2629669 ttaaatgtggagaagtggggtgttcggggttcgaaccccgacccctgcataaattatgcaatgtc 2629605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 13551121 - 13551056
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaa 235  Q
    ||||||||||||||||||| ||||||  ||||||||||| || ||||||||  |||||||| ||||||    
T  13551121 gtcaagtagtttagtggttaaagctc--acattttaaatgtgaagaagtggaatgttcggggttcgaa 13551056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 13578432 - 13578504
Alignment:
Q  188 aagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||| ||| ||||| | |||||||||||||||| |||| ||||||||| |||| | ||||||| ||||||    
T  13578432 aagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccgacccctgcatataatatgca 13578504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 30057345 - 30057253
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  ||||||||  |||||| ||| ||||| | |||||||||||||||| |||| || |||||| |||| | ||||||| ||||||    
T  30057345 gtcaagtagcctagtggttagagctcacacaatttaattgtggagaagtggggtgtccggggtttgaaccccgacccctgcatataatatgca 30057253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 35207098 - 35207190
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| |||| | ||||||||| ||| ||||| | ||||||||| | |||| ||||| ||||||||||||  | ||||||| ||||||    
T  35207098 gtcaagtagtctagtagctgaagctcacacaatttaattgtggagaagtagagtgtccgggactcgaaccctgactcctgcatataatatgca 35207190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 23176680 - 23176762
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||| || |||||| ||||||||||| ||||||| |||||||| |||| ||||||||| |||| | |||||||  |||||||    
T  23176680 tagtggctggagctcacacattttaaatgtggagaa-tggggtgtccggggttcgaaccccgacccctgcatataaaatgcatt 23176762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 30305911 - 30305852
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| |||||||||| ||||| |||| |||||||||    
T  30305911 tagtggctggagctcacacattttaaatgtggagaagtgaggtgtccggggttcgaaccc 30305852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 243
Target Start/End: Original strand, 38848072 - 38848142
Alignment:
Q  172 agtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacc 243  Q
    |||||| ||||||||  |||||| |||||| |||| |||||||||||||||| |||| ||||||||| ||||    
T  38848072 agtagtctagtggttagagctcacacattt-aaatgtggagaagtggggtgtccggggttcgaaccccgacc 38848142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 1817227 - 1817296
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| |||||| ||||||||  |||| |||||| ||||||||| |||||||| ||||| ||||||    
T  1817227 gtcaagtagtctagtggctgaagctcgcacatgttaaatgtggagaagt-gggtgttccggatttgaaccc 1817296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 10417168 - 10417242
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgac 242  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||| |||| |||| |||||||||||||    
T  10417168 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccctgac 10417242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 13976335 - 13976277
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    ||||||||||| |||||||||||||||| || | |||||| |||||| || ||||||||    
T  13976335 tagtggttgaaactcatacattttaaatgtgaataagtggagtgttcagggttcgaacc 13976277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 270
Target Start/End: Complemental strand, 21432737 - 21432635
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    |||||||||  |||| |||  |||||| ||||||||||||||||||| |||||| | | || ||||| ||| |||||| | ||||| |||||| | ||||    
T  21432737 gtcaagtagcctagtagttagagctcacacattttaaatatggagaaatggggtatccagggttcgatccccgacctctgtatataatatgcaatatctc 21432638  T
Q  268 tac 270  Q
    |||    
T  21432637 tac 21432635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 23695174 - 23695132
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacc 243  Q
    |||||| |||||||||||||||| |||| ||||||||||||||    
T  23695174 ttaaatgtggagaagtggggtgtccggggttcgaaccctgacc 23695132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 42395350 - 42395280
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| |||||| | ||||||| ||| ||||| | |||||||||||||||| |||  |||||||||    
T  42395350 gtcaagtagtctagtggctaaagctcacacaatttaattgtggagaagtggggtgtccggagttcgaaccc 42395280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 56087901 - 56087971
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| |||||| |  | |||| ||| ||||| | |||||||||||||||| ||||||||||||||    
T  56087901 gtcaagtagtctagtggctagaactcacacaatttaattgtggagaagtggggtgtccgggattcgaaccc 56087971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 2871006 - 2870938
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    ||||| |||| |||||||||||||||| |||| |||||| |||||||||  |||||| ||| ||||||||    
T  2871006 gtcaaatagtctagtggttgaagctcacacatattaaatttggagaagt-aggtgtttggggttcgaacc 2870938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 15064149 - 15064218
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    ||||||||||||||||| |  |||||| ||| ||||| ||||||||||||| || | |||| ||||||||    
T  15064149 gtcaagtagtttagtggctagagctcacacaatttaattatggagaagtggagtatccggggttcgaacc 15064218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 270
Target Start/End: Original strand, 41137888 - 41137969
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    |||||| |||||||||||||| |||||||||||||  | | |||||||||  ||| | ||||||| |||||| |||| ||||    
T  41137888 agctcaaacattttaaatatgaagaagtggggtgtctgtggttcgaaccccaacccctgcatatattatgcaatgtccctac 41137969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 288
Target Start/End: Complemental strand, 47890807 - 47890698
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgag 278  Q
    ||||||||  |||||| ||| ||||| | ||||||||||| ||||  ||| ||||||||| |||| | ||||||| |||||| | |||||||  | ||||    
T  47890807 tagtggttagagctcacacaatttaattgtggagaagtggagtgtctggggttcgaaccccgacccctgcatataatatgcaatatctctaccaactgag 47890708  T
Q  279 ttaaactcac 288  Q
    || |||||||    
T  47890707 tttaactcac 47890698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 8965217 - 8965125
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  ||||||||  |||||| ||| ||||| | | |||||||||||||| |||| ||||||||| | || | ||||||| ||||||    
T  8965217 gtcaagtagcctagtggttagagctcacacaatttaattgtagagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgca 8965125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 11294817 - 11294905
Alignment:
Q  200 tttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgagttaaactcac 288  Q
    ||||||| |||||||||||||||| |||| ||||||||| | || | ||||| | |||||| |||| || |  |||||||||| |||||    
T  11294817 tttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcataaattatgcaatgtccctgccaattgagttaagctcac 11294905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 291
Target Start/End: Complemental strand, 29406468 - 29406357
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgag 278  Q
    ||||||||| |||||| ||| || |||| |||||||||||| ||| |||  ||||||||| |||| | ||||| | |||||| |||| ||||  ||||||    
T  29406468 tagtggttggagctcacacaatt-aaatgtggagaagtgggttgtccggagttcgaaccccgacccctgcataaattatgcaatgtccctaccaattgag 29406370  T
Q  279 ttaaactcacaga 291  Q
     ||| ||||||||    
T  29406369 ctaagctcacaga 29406357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 31852439 - 31852403
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  31852439 ttaaatatggagaagtggggtgtccggggttcgaacc 31852403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 205
Target Start/End: Original strand, 56298065 - 56298101
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaa 205  Q
    |||||||||||||||||| ||||||| ||||||||||    
T  56298065 tcaagtagtttagtggttaaagctcacacattttaaa 56298101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 179 - 282
Target Start/End: Complemental strand, 15939401 - 15939298
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgag 278  Q
    |||||| || |||||| ||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||| |||||| ||||||| |  ||||||    
T  15939401 tagtggctggagctcacacattttaaatgtggagaagtggggtgttcggggttcgaaccctaacctctgcatatattatgcaatgtctctgccaattgag 15939302  T
Q  279 ttaa 282  Q
    ||||    
T  15939301 ttaa 15939298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 9985066 - 9985126
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcggg 228  Q
    ||||||||||||||||||||||| ||| ||||||||||  |||||||||||||||||||||    
T  9985066 gtcaagtagtttagtggttgaagttcacacattttaaacgtggagaagtggggtgttcggg 9985126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 41492754 - 41492809
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    |||||||||||||||||||| ||| || ||||| ||||||||||||||||||||||    
T  41492754 gtcaagtagtttagtggttggagcccacacattataaatatggagaagtggggtgt 41492809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 20497163 - 20497212
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| ||||||||||| |||||||||||||||| ||||||||||||||    
T  20497163 agctcacacattttaaatgtggagaagtggggtgtccgggattcgaaccc 20497212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 23984175 - 23984264
Alignment:
Q  173 gtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||| ||||||| || || ||| ||||||||||| |||||||||||||||| |||| ||||||||||| || | |||||||  |||||||    
T  23984175 gtagcttagtggctggagttcacacattttaaatgtggagaagtggggtgtccggggttcgaaccctggcccctgcatataaaatgcatt 23984264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 7379548 - 7379639
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||||||||||| |  | |||| |||| | |||| ||||||| |||||||||||| |||||||||| |||||| ||||||| ||||||    
T  7379548 gtcaagtagtttagtggctagaactcacacatat-aaatgtggagaaatggggtgttcggaattcgaaccccgacctctgcatataatatgca 7379639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 11268401 - 11268337
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacc 243  Q
    |||||| || |||||| |||||||||||||||||||||  |||||||| | ||||||||||||||    
T  11268401 tagtggctggagctcacacattttaaatatggagaagtacggtgttcgaggttcgaaccctgacc 11268337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 33041810 - 33041930
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    |||||| ||| ||||||||  |||||| ||| ||||| | || |||||| ||||||||||| ||||||||||| |||  ||||||| |||||| | || |    
T  33041810 gtcaagcagtctagtggttagagctcacacaatttaattgtgaagaagtagggtgttcggggttcgaaccctggcctttgcatataatatgcaatatccc 33041909  T
Q  268 tactgattgagttaaactcac 288  Q
    |||  | ||||||||||||||    
T  33041910 taccaactgagttaaactcac 33041930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 243
Target Start/End: Complemental strand, 34391529 - 34391453
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacatttt-aaatatggagaagtggggtgttcgggattcgaaccctgacc 243  Q
    |||||||||||||||||  | |||||| ||||||| ||||||||||||||||||||| || |||||| |||| ||||    
T  34391529 gtcaagtagtttagtggccggagctcaaacatttttaaatatggagaagtggggtgtccgagattcgcaccccgacc 34391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 5947978 - 5947895
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||| || |||||| ||||||||||| ||||| |||||||||| |||| ||||||||| |||| | |||||||  |||||||    
T  5947978 tagtggctggagctcacacattttaaatgtggaggagtggggtgtccggggttcgaaccccgacccctgcatataaaatgcatt 5947895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 290
Target Start/End: Complemental strand, 10058992 - 10058869
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggag-aagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtct 266  Q
    |||||||||  |||||| || |||| | ||||||||||||| ||  ||||| | ||| |||| ||| ||||| |||||  ||||||| ||||||||||||    
T  10058992 gtcaagtagcctagtggctggagcttacacattttaaatatagaataagtgagttgtccggggttcaaaccccgacctttgcatatattatgcattgtct 10058893  T
Q  267 ctactgattgagttaaactcacag 290  Q
    ||||  |||||||||| |||||||    
T  10058892 ctaccaattgagttaagctcacag 10058869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 14518396 - 14518337
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||||||||||||||| ||||||| | |||||||||    
T  14518396 tagtggctggagctcacacattttaaatatggagaagtggagtgttcgaggttcgaaccc 14518337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 32854655 - 32854585
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||  |||||| || |||||| ||||||||||| ||||||||| |||||| |||| |||||||||    
T  32854655 gtcaagtagcctagtggctggagctcacacattttaaatgtggagaagtagggtgtccggggttcgaaccc 32854585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 17777138 - 17777195
Alignment:
Q  196 acattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    ||||||||||| |||||||||||||||| |||| ||||||||| |||| | |||||||    
T  17777138 acattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcatata 17777195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 237
Target Start/End: Complemental strand, 24374292 - 24374251
Alignment:
Q  196 acattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||||||||||||| ||||||||||||| |||||||||||    
T  24374292 acattttaaatatggataagtggggtgttcaggattcgaacc 24374251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 268
Target Start/End: Complemental strand, 3596368 - 3596273
Alignment:
Q  172 agtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctct 268  Q
    |||||| |||||| || |||||| ||| || |||| |||||||||||||||| |||| ||||||||| |||| | ||||| | |||||| |||||||    
T  3596368 agtagtgtagtggctggagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcataaattatgcaatgtctct 3596273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 39635420 - 39635300
Alignment:
Q  171 aagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    ||||||| |||||| || || ||| ||||||||||| ||||||||||| ||||  ||  ||||||||| |||| || |||||| |||||| ||| | |||    
T  39635420 aagtagtctagtggctggagatcacacattttaaatgtggagaagtggagtgtctggagttcgaaccccgaccccaacatatattatgcaatgtttttac 39635321  T
Q  271 tgattgagttaaactcacaga 291  Q
      |||||||||| || |||||    
T  39635320 caattgagttaagcttacaga 39635300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 288
Target Start/End: Complemental strand, 36749008 - 36748890
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctct 268  Q
    ||||||||||||||   || |||||| ||||||||||| ||||||||||| |||||||   ||||||||| |||| | |||| || |||||| |||| ||    
T  36749008 tcaagtagtttagtaactggagctcacacattttaaatgtggagaagtggagtgttcgaagttcgaaccccgacccctgcat-taatatgcaatgtccct 36748910  T
Q  269 actgattgagttaaactcac 288  Q
    ||  | |||||||| |||||    
T  36748909 accaactgagttaagctcac 36748890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 28153089 - 28153159
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| |||||| |  |||||| ||| ||||| | |||||||||||||||| |||| |||||||||    
T  28153089 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccc 28153159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 37486880 - 37486950
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||| |||| |||||| |  |||||| ||| ||||| | ||||||||||| |||||||||||||||||||    
T  37486880 gtcaaatagtctagtggctagagctcacacaatttaattgtggagaagtggagtgttcgggattcgaaccc 37486950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 20919700 - 20919631
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    |||||| |||||||||||||||| |||| ||||||||| | || ||||||| | |||||| |||| ||||    
T  20919700 ttaaatgtggagaagtggggtgtccggggttcgaaccccggccccagcataaattatgcaatgtccctac 20919631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Complemental strand, 43936824 - 43936739
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||||||||||||  |||||| ||| ||||| | ||||||||||| || | ||   |||||||||||||| | |||||||    
T  43936824 gtcaagtagtttagtggttagagctcacacaatttaattgtggagaagtggagtatccgaacttcgaaccctgacccctgcatata 43936739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 18254701 - 18254657
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    ||||||||| |||||| ||||||||||| || |||||||||||||    
T  18254701 tagtggttggagctcacacattttaaatgtgaagaagtggggtgt 18254657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 22653591 - 22653683
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||| |||| |||||| |  |||||||||| ||||| | ||||||||||| |||| |||| ||||||||| |||  | ||||||| ||||||    
T  22653591 gtcaaatagtctagtggctagagctcatacaatttaattgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgca 22653683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 29942106 - 29942194
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgagttaaactcaca 289  Q
    |||||||||||||||||| |||| | | ||||||||||   |||| ||||||| |||||| | || ||||| | |||||||| ||||||    
T  29942106 ttaaatatggagaagtggagtgtccagaattcgaacccccgcctctgcatataatatgcaatatccctactaactgagttaagctcaca 29942194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 33228880 - 33228972
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||||| |||| ||||||||| | || | ||||||| ||||||    
T  33228880 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgca 33228972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 33587191 - 33587143
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||| | |||||||||||||||||||||||||| |||| || |||||    
T  33587191 agctcacatattttaaatatggagaagtggggtgtccggggtttgaacc 33587143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 35429556 - 35429628
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctg 240  Q
    |||||||||  |||||| || ||||||  |||||||||| ||||||||||| ||||  ||| |||||||||||    
T  35429556 gtcaagtagcctagtggatgcagctcacgcattttaaatgtggagaagtggagtgtcaggggttcgaaccctg 35429628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 38525521 - 38525585
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||| ||| ||||| | ||||||||||| |||||| || |||||||||||||| | |||||||    
T  38525521 agctcacacaatttaattgtggagaagtggagtgttccgggttcgaaccctgacccctgcatata 38525585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 168 - 262
Target Start/End: Original strand, 25883935 - 25884029
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||||||  |||||| || |||||| ||||||||||| |||||||||||||||| |||| ||||||||| |||| | ||||||| ||||||||    
T  25883935 gtcaagtagcctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcatatattatgcatt 25884029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 172 - 268
Target Start/End: Original strand, 46817303 - 46817398
Alignment:
Q  172 agtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctct 268  Q
    |||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||| ||| |||||  |||||  |||| | |||||| |||||||    
T  46817303 agtagtttagtggtcgaagctcacacattt-aaatgtggagaagtggggtgttcggggttcaaaccccaacctctacataaattatgcaatgtctct 46817398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 15085642 - 15085725
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||| || |||||| |||||||||||||||||||||| ||||| |||| ||||||||| |||| | |||||||  |||||||    
T  15085642 tagtggctggagctcacacattttaaatatggagaagtgaggtgtccggggttcgaaccccgacccctgcatataaaatgcatt 15085725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 270
Target Start/End: Complemental strand, 14795222 - 14795132
Alignment:
Q  180 agtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    |||||||| |||||| ||||||||||| |||||||||||||||| |||| || |||||||| |  | ||||||| |||||| |||| ||||    
T  14795222 agtggttggagctcacacattttaaatgtggagaagtggggtgtccggggtttgaaccctggcacctgcatatattatgcaatgtcactac 14795132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 4807993 - 4808061
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    ||||||||| ||||||||  |||||| ||||||||||| | |||||||||||||||| || ||||||||    
T  4807993 tcaagtagtctagtggttagagctcacacattttaaatgtagagaagtggggtgttcagggttcgaacc 4808061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 49028896 - 49028960
Alignment:
Q  174 tagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||| ||||||||| ||||||  |||||||||| ||||||||||| ||||||||| |||||||||    
T  49028896 tagtctagtggttggagctcacgcattttaaatgtggagaagtggagtgttcggggttcgaaccc 49028960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 9685107 - 9685049
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  9685107 tagtggctggagctcacacattt-aaatatggagaagtggagtgttcgggattcgaaccc 9685049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 12007088 - 12007143
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    |||||||||||||||||||  ||||| || |||||||||||| |||||||||||||    
T  12007088 gtcaagtagtttagtggttagagctcttatattttaaatatgcagaagtggggtgt 12007143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 27329890 - 27329949
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| |||||||||||||||| |||| |||||||||    
T  27329890 tagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 27329949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 41253707 - 41253766
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| |||||||||||||||| ||||| |||||||||| |||||||||    
T  41253707 tagtggctggagctcacacattttaaatatggaaaagtgaggtgttcggggttcgaaccc 41253766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 41710695 - 41710636
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| |||||||||| ||||| ||||||||||||||    
T  41710695 tagtggctggagctcacacattttaaatgtggagaagtgaggtgtccgggattcgaaccc 41710636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 44625183 - 44625242
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||||||| |||||  ||||||||||| |||||||||||||||| |||| |||||||||    
T  44625183 tagtggttggagctcccacattttaaatgtggagaagtggggtgtccggggttcgaaccc 44625242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 51879207 - 51879148
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| |||||||||||||||| |||| |||||||||    
T  51879207 tagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 51879148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 290
Target Start/End: Original strand, 53432684 - 53432806
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||||| |||| ||||||||| | || | ||||||| |||||| | || |    
T  53432684 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgcaatatccc 53432783  T
Q  268 tactgattgagttaaactcacag 290  Q
    |||  | ||||||||||||||||    
T  53432784 taccaactgagttaaactcacag 53432806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 16231839 - 16231892
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggt 221  Q
    |||||||||| |||||| || |||||  ||||||||||||||||||||||||||    
T  16231839 gtcaagtagtctagtggctggagctcgcacattttaaatatggagaagtggggt 16231892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 169 - 238
Target Start/End: Original strand, 32256502 - 32256571
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||||||||| |  |||||| ||| ||||| | |||||||||||||||| |||| |||||||||    
T  32256502 tcaagtagtttagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccc 32256571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 32732484 - 32732569
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    ||||||||||||| ||| | ||||||| ||| ||||| ||||||||||||| |||| |||  ||||||||| |||| | |||||||    
T  32732484 gtcaagtagtttattggctaaagctcacacaatttaattatggagaagtggagtgtccggagttcgaaccccgacccctgcatata 32732569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 262
Target Start/End: Complemental strand, 35200673 - 35200584
Alignment:
Q  173 gtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||||||||||| || |||| ||||||||||| ||||||| || ||||| |||| || |||||| ||||||  ||||||  |||||||    
T  35200673 gtagtttagtggttaaaactcacacattttaaatgtggagaaatgaggtgtccggggtttgaaccccgacctctacatataaaatgcatt 35200584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 16991958 - 16991910
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtg 217  Q
    ||||||| |||| |||||| |||||| ||||||||||||||||||||||    
T  16991958 tcaagtaatttaatggttgtagctcacacattttaaatatggagaagtg 16991910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 24430272 - 24430204
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||||||||||| |||||||||    
T  24430272 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgttcgagattcgaac 24430204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 27119351 - 27119311
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||||||||||||||||||| |||||| |||||||    
T  27119351 aagtggggtgttcgggattcgaaccccgacctctgcatata 27119311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 31587049 - 31586978
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||| ||| ||||| | |||||||||||||||| |||||||||||| | |||| | ||||||| ||||||    
T  31587049 agctcacacaatttaattgtggagaagtggggtgtccgggattcgaactccgacccctgcatataatatgca 31586978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 223
Target Start/End: Complemental strand, 36666579 - 36666528
Alignment:
Q  172 agtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    |||||| ||||||||  |||||||||||| ||||| ||||||||||||||||    
T  36666579 agtagtctagtggttagagctcatacattataaatgtggagaagtggggtgt 36666528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 40192246 - 40192187
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||| ||||||||||| |||| |||||||||||| | |||||| ||||||| ||||||    
T  40192246 ttaaatgtggagaagtggagtgtccgggattcgaacaccgacctctgcatataatatgca 40192187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 2106136 - 2106046
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctcta 269  Q
    |||||| || |||||| ||||||||||| || |||| | || ||| ||| |||||||||| |||| | ||||||| |||||| ||||||||    
T  2106136 tagtggctggagctcacacattttaaatgtgaagaaataggatgtccggtattcgaaccccgacccctgcatataatatgcaatgtctcta 2106046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 221
Target Start/End: Complemental strand, 10350623 - 10350581
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggt 221  Q
    ||||||||  |||||||||||||||||| ||||||||||||||    
T  10350623 tagtggttagagctcatacattttaaatgtggagaagtggggt 10350581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 23090364 - 23090282
Alignment:
Q  180 agtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    ||||| || |||||| |||||||  || ||||||||||||||||  ||||||||||||| ||||   ||||||| ||||||||    
T  23090364 agtggctggagctcacacattttttatgtggagaagtggggtgtctgggattcgaaccccgaccattgcatatattatgcatt 23090282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 238
Target Start/End: Complemental strand, 43280159 - 43280121
Alignment:
Q  200 tttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  43280159 tttaaatgtggagaagtggggtgtccgggattcgaaccc 43280121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 4860284 - 4860215
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||||||| ||||||||  |||||| ||| ||||| | ||||||||||||||||  ||| ||||||||    
T  4860284 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaagtggggtgtctggggttcgaacc 4860215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 4880292 - 4880223
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||||||| ||||||||  |||||| ||| ||||| | ||||||||||||||||  ||| ||||||||    
T  4880292 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaagtggggtgtctggggttcgaacc 4880223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 5173990 - 5174027
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  5173990 ttaaatgtggagaagtggggtgttcggggttcgaaccc 5174027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 29098782 - 29098713
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    |||||||||||||| |||||||| |||| ||||||||| |||| | ||||||| ||| || | |||||||    
T  29098782 ttaaatatggagaaatggggtgtccggggttcgaaccccgacccctgcatataatatacaatatctctac 29098713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Complemental strand, 38949764 - 38949727
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| ||||||||||||||||||||| |||||||||    
T  38949764 ttaaatgtggagaagtggggtgttcggggttcgaaccc 38949727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 11206113 - 11206021
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||| | ||||||||||||||  |||||  |||||| ||||||    
T  11206113 gtcaagtagcctagtggctagagctcacacaatttaactgtggagaagtggggtatccgggattcgaaccccaacctctacatataatatgca 11206021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 15792329 - 15792277
Alignment:
Q  171 aagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    ||||| ||||||||||| || ||||||| | ||||| ||||||||||||||||    
T  15792329 aagtaatttagtggttggagttcatacactataaatgtggagaagtggggtgt 15792277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 15975355 - 15975415
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcggg 228  Q
    |||||||||  ||||||||  |||||| ||| ||||| ||||||||||||| |||||||||    
T  15975355 gtcaagtagcctagtggttagagctcacacaatttaattatggagaagtggagtgttcggg 15975415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 17729114 - 17729022
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||| |||| | || ||||||||| |||| | ||||||| ||||||    
T  17729114 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtccagggttcgaaccccgacccctgcatataatatgca 17729022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 19030343 - 19030251
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||| |||| | || ||||||||| |||| | ||||||| ||||||    
T  19030343 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtccagggttcgaaccccgacccctgcatataatatgca 19030251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 28951941 - 28951901
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||||||||| |||||||||||||| | |||||||    
T  28951941 aagtggggtgttcggggttcgaaccctgacccctgcatata 28951901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 39720058 - 39719966
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||||| |||| ||||||||| | || | ||||||| ||||||    
T  39720058 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgca 39719966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 41936354 - 41936446
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||||| |||| ||||||||| | || | ||||||| ||||||    
T  41936354 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgca 41936446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 885105 - 885173
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    |||||||||| ||||||||| |||||| |||||||||||||||||||||| |||||||||  |||||||    
T  885105 gtcaagtagtctagtggttggagctcacacattttaaatatggagaagtgaggtgttcggagttcgaac 885173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 190 - 260
Target Start/End: Original strand, 7545367 - 7545437
Alignment:
Q  190 gctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||| ||||||||||| |||||||||||||||| ||||||||||| ||||||| | ||||||| ||||||    
T  7545367 gctcacacattttaaatgtggagaagtggggtgtccgggattcgaatcctgacccctgcatataatatgca 7545437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 169 - 240
Target Start/End: Original strand, 25460728 - 25460800
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacatttt-aaatatggagaagtggggtgttcgggattcgaaccctg 240  Q
    ||||||||| ||||||||  |||||| ||||||| |||| ||||||||||||||||||||| |||||||||||    
T  25460728 tcaagtagtctagtggttagagctcacacatttttaaatgtggagaagtggggtgttcggggttcgaaccctg 25460800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 33909117 - 33909034
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||| || |||||||||||||||||| ||||||||| |||||| |||| ||||||||| ||||||  ||||||  |||||||    
T  33909117 tagtggctggagctcatacattttaaatgtggagaagttgggtgtccggggttcgaaccccgacctctacatataaaatgcatt 33909034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 253
Target Start/End: Complemental strand, 3741066 - 3740992
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||| || |||||| ||||||||||| |||||||||||||||| |||| ||||||||| |||| | |||||||    
T  3741066 tagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcatata 3740992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 41179750 - 41179820
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||||||||||||||| |  |||||| ||| ||||||| ||||||||||| |||| ||||||||||||||    
T  41179750 gtcaagtagtttagtggctagagctcacacaatttaaatgtggagaagtggagtgtccgggattcgaaccc 41179820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 42916512 - 42916442
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||||||||||||||| | ||||||| ||| ||||| | |||||||||||||||| |||| |||||||||    
T  42916512 gtcaagtagtttagtggctaaagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccc 42916442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 260
Target Start/End: Complemental strand, 8241162 - 8241081
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||  |||||| ||||||||||| |||||||||||||||| |||| ||||||||| ||||   ||||||| ||||||    
T  8241162 tagtggttagagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccttgcatataatatgca 8241081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 36124522 - 36124430
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| ||||||||  |||||| ||| || || | ||||||||||| |||| |||||||||||||| |||| | ||||||| ||||||    
T  36124522 gtcaagtagtctagtggttagagctcacacagttaaattgtggagaagtggagtgtccgggattcgaaccccgacccctgcatataatatgca 36124430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 3821379 - 3821438
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| |||||||||||||| | ||||||||||||||    
T  3821379 tagtggctggagctcacacattttaaatgtggagaagtggggtttccgggattcgaaccc 3821438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 235
Target Start/End: Original strand, 6734686 - 6734752
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaa 235  Q
    ||||| |||| |||||| || |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  6734686 gtcaattagtctagtggctggagctcacacattttaaatgtggagaagtggggtg-tcgggattcgaa 6734752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 288
Target Start/End: Complemental strand, 18473909 - 18473810
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgagttaaactcac 288  Q
    |||||| ||||||||||||||||||| |||| | |||||| || ||| ||||||| | ||||||| ||| || | || |||| ||||||||||| |||||    
T  18473909 agctcacacattttaaatatggagaaatgggatattcggggttagaatcctgacccctgcatataatatacaatatccctaccgattgagttaagctcac 18473810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 28871282 - 28871365
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    ||||||||| | |||| |||||||||||  |||||||||| |||| |||||||||||||| |||| | |||||||  |||||||    
T  28871282 tagtggttggaactcacacattttaaatgcggagaagtggagtgtccgggattcgaaccccgacccctgcatataaaatgcatt 28871365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 239
Target Start/End: Original strand, 34434247 - 34434318
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccct 239  Q
    |||||||||||||||||||| |||||| ||||||||||| | ||||| || |||||   |||||||||||||    
T  34434247 gtcaagtagtttagtggttggagctcacacattttaaatgtagagaaatgaggtgtctaggattcgaaccct 34434318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 39799977 - 39800032
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    ||||| |||| |||||| ||||||||| ||||||||||| ||||||||||||||||    
T  39799977 gtcaaatagtctagtggctgaagctcacacattttaaatgtggagaagtggggtgt 39800032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 270
Target Start/End: Original strand, 27545098 - 27545200
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    |||||||||| | ||| | |||||||| |||||||||||||| ||||||| ||||| || |||| |||||  ||||   ||||||| ||||||||||| |    
T  27545098 gtcaagtagtctggtgatggaagctcacacattttaaatatgaagaagtgaggtgtccgagatttgaacctcgacccttgcatatattatgcattgtccc 27545197  T
Q  268 tac 270  Q
    |||    
T  27545198 tac 27545200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 16891469 - 16891400
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||| ||||||||||||||||||    
T  16891469 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgttcgggattcgaacc 16891400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 28553874 - 28553931
Alignment:
Q  180 agtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||||| |||||| ||||||||||| || |||| ||||||||||| ||||||||||    
T  28553874 agtggttggagctcagacattttaaatgtgaagaaatggggtgttcgagattcgaacc 28553931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 172 - 235
Target Start/End: Original strand, 28822708 - 28822770
Alignment:
Q  172 agtagtttagtggttgaagctcatacatt-ttaaatatggagaagtggggtgttcgggattcgaa 235  Q
    |||||| ||||||||| ||||||  |||| |||||||||||||||||||||||||||| ||||||    
T  28822708 agtagtctagtggttggagctca--cattattaaatatggagaagtggggtgttcggggttcgaa 28822770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 15241519 - 15241427
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| |||||| |  |||||| ||| ||||| | |||||||||||||||| || | ||||||||| |||| | ||||||| ||||||    
T  15241519 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgtccgaggttcgaaccccgacccctgcatataatatgca 15241427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 262
Target Start/End: Original strand, 30208962 - 30209042
Alignment:
Q  182 tggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||| || ||| |||||||||||||||||||||||||||  || | ||||||||| |||| | |||||||  |||||||    
T  30208962 tggttggagatcacacattttaaatatggagaagtggggtgcccgaggttcgaaccccgacccctgcatataaaatgcatt 30209042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 236
Target Start/End: Original strand, 4054234 - 4054269
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    |||||||||||||||||||||||||||| |||||||    
T  4054234 ttaaatatggagaagtggggtgttcggggttcgaac 4054269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 23937891 - 23937950
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| ||||| |||||||||| |||| |||||||||    
T  23937891 tagtggctgtagctcacacattttaaatgtggaggagtggggtgtccggggttcgaaccc 23937950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 270
Target Start/End: Complemental strand, 4068104 - 4068003
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    |||||||||  ||||||||| |||||| ||| || |||| |||||||||||||||| |||| ||||||||  | || | ||||| | ||||||||||| |    
T  4068104 gtcaagtagcgtagtggttggagctcacacaatt-aaatgtggagaagtggggtgtccggggttcgaacctcgccccctgcataaaatatgcattgtccc 4068006  T
Q  268 tac 270  Q
    |||    
T  4068005 tac 4068003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 12891679 - 12891610
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| ||||||||  |||||| |||| | |||| |||||||||||||||| |||| |||||||||    
T  12891679 gtcaagtagtctagtggttatagctcacacatat-aaatgtggagaagtggggtgtccggggttcgaaccc 12891610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 17891810 - 17891876
Alignment:
Q  173 gtagtttagtggttgaagctcatacattttaaa-tatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||| ||||||| || |||||| |||||||||| | |||||||||||||||| |||| |||||||||    
T  17891810 gtagcttagtggctggagctcacacattttaaaatgtggagaagtggggtgtccggggttcgaaccc 17891876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 43581001 - 43580931
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||| |||| ||||||||||||||    
T  43581001 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtccgggattcgaaccc 43580931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 6735757 - 6735821
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||| ||| ||||| | ||||||||||| ||||||||| ||||||||| |||| | |||||||    
T  6735757 agctcacacaatttaattgtggagaagtggagtgttcggggttcgaaccccgacccctgcatata 6735821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 7443451 - 7443407
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    ||||||||| |||||| ||||| ||||| ||||||||||||||||    
T  7443451 tagtggttggagctcacacattataaatgtggagaagtggggtgt 7443407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 11897371 - 11897279
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||| |||| |||| ||||||||| |||  | ||||||| ||||||    
T  11897371 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgca 11897279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 33372949 - 33373016
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    |||||||||| |||||| || |||| | ||||||||||| ||||||||| ||||||||||  |||||||    
T  33372949 gtcaagtagtctagtggctggagcttacacattttaaatgtggagaagt-gggtgttcggagttcgaac 33373016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 36564390 - 36564454
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||| |||||||||||||||||| ||||||||| || | ||||||| | | || |||||||||    
T  36564390 agctcacacattttaaatatggagaggtggggtgtccgtggttcgaactccggccccagcatata 36564454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 36888342 - 36888434
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||| ||||||| |  |||||| ||| ||||| | ||||||||||| |||| |||| ||||||||| |||  | ||||||| ||||||    
T  36888342 gtcaagtagcttagtggctagagctcacacaatttaattgtggagaagtggagtgtccggggttcgaaccccgactcctgcatataatatgca 36888434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 288
Target Start/End: Original strand, 41083525 - 41083604
Alignment:
Q  208 tggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgagttaaactcac 288  Q
    |||||||||||||||| ||| |||||||||| |||| | ||||| | |||||| |||||||||  | |||| |||||||||    
T  41083525 tggagaagtggggtgtccgg-attcgaaccccgacccctgcataaattatgcaatgtctctaccaactgagctaaactcac 41083604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 45)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 18911969 - 18911889
Alignment:
Q  173 gtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||||| || |||||| ||||||||||| ||||| |||||||||| |||| |||||||||||||| | |||||||    
T  18911969 gtagtttagtggctggagctcacacattttaaatgtggaggagtggggtgtccggggttcgaaccctgacccctgcatata 18911889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 18512522 - 18512592
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||| ||||| |||||| || |||||| ||||||||||| |||||||||||||||| |||| |||||||||    
T  18512522 gtcaggtagtctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 18512592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 13763878 - 13763814
Alignment:
Q  174 tagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||||||||| ||||||||| ||||||||||| | |||||||||||| | |||| |||||||||    
T  13763878 tagtttagtggctgaagctcacacattttaaatgtagagaagtggggtatccggggttcgaaccc 13763814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 16182293 - 16182253
Alignment:
Q  196 acattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  16182293 acattttaaatgtggagaagtggggtgttcgggattcgaac 16182253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 36313927 - 36313994
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    |||||||||| ||||||||| |||||| ||||| ||| | ||||||||||||||||||||| |||||||    
T  36313927 gtcaagtagtctagtggttggagctcacacattataa-tgtggagaagtggggtgttcggggttcgaac 36313994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 37662504 - 37662596
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| ||||||||| |||||| ||| ||||| | | |||||||||||||| |||| |||| |||| |||| | ||||||| ||||||    
T  37662504 gtcaagtagtctagtggttggagctcacacaatttaactgtagagaagtggggtgtccggggttcgtaccccgacccctgcatataatatgca 37662596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 569622 - 569728
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac-cctgacctcagcatatactatgcattgtctctactgattga 277  Q
    |||| |||||| |||||||||||||||| ||||||||||  ||| ||||  ||||||| ||||||| | ||||||| |||| | |||||||||  |||||    
T  569622 tagttgttgaaactcatacattttaaatgtggagaagtgatgtg-tcggtgttcgaacacctgaccactgcatatattatgtaatgtctctaccaattga 569720  T
Q  278 gttaaact 285  Q
    ||||||||    
T  569721 gttaaact 569728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 36860700 - 36860629
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||| ||||||||||| |||||||||||||||| |||| |||| |||| | |||| ||||||| ||||||    
T  36860700 agctcacacattttaaatgtggagaagtggggtgtccggggttcggaccccggcctctgcatataatatgca 36860629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 8741596 - 8741526
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||  ||||||||| |||||| ||||| ||||| ||||||||||||||||  ||| |||||||||    
T  8741596 gtcaagtagcctagtggttggagctcacacattataaatgtggagaagtggggtgtcaggggttcgaaccc 8741526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 12404478 - 12404408
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| || ||||   |||||||||| ||||| | ||||||||||||||||||||| |||||||||    
T  12404478 gtcaagtagtctaatggtcagagctcatacaatttaattgtggagaagtggggtgttcggggttcgaaccc 12404408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 40101948 - 40101878
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||||||| ||||||| |  | |||||||| ||||| ||||||||||| | |||||||||||||||||||    
T  40101948 gtcaagtagcttagtggatagacctcatacaatttaattatggagaagtagagtgttcgggattcgaaccc 40101878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 262
Target Start/End: Complemental strand, 42735992 - 42735910
Alignment:
Q  180 agtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||| ||| |||||| ||||||||||| | |||||||||||||| ||| |||| ||||| |||| | ||||||| ||||||||    
T  42735992 agtgattggagctcacacattttaaatgtagagaagtggggtgtccggaattcaaacccagacccctgcatatattatgcatt 42735910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 238
Target Start/End: Original strand, 21247696 - 21247761
Alignment:
Q  173 gtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||| ||||||| ||| |||  |||||||||||||||||||||||||||| || | |||||||||    
T  21247696 gtagtctagtggtggaaactcgcacattttaaatatggagaagtggggtgtccgaggttcgaaccc 21247761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 2754483 - 2754391
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||||||||||| |  |||||| ||| ||||| | ||||||||| |||||| |||| ||||||||| | || | ||||||| ||||||    
T  2754483 gtcaagtagtttagtggctagagctcacacaatttaattgtggagaagtagggtgtccggggttcgaaccccggccccggcatataatatgca 2754391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 260
Target Start/End: Original strand, 9866135 - 9866223
Alignment:
Q  172 agtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||| |||||| |  |||||| ||| ||||| | |||| |||||| ||||||||||||||||||| |||| | ||||||| ||||||    
T  9866135 agtagtctagtggctagagctcacacaatttaattgtggaaaagtggagtgttcgggattcgaaccccgacccctgcatataatatgca 9866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 271
Target Start/End: Original strand, 19063280 - 19063383
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    ||||||||||||||| |||  |||||| ||| || || | |||||||||||||||| |||| | ||||||| | || | ||||||| |||||| | ||||    
T  19063280 gtcaagtagtttagtagttagagctcacacaattaaattgtggagaagtggggtgtccggggtacgaaccccggcccctgcatataatatgcaatatctc 19063379  T
Q  268 tact 271  Q
    ||||    
T  19063380 tact 19063383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Original strand, 24910458 - 24910517
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||||||||||| |||| |||| |||||||||||||| | ||||| | ||||||    
T  24910458 ttaaatatggagaagtggagtgtccggggttcgaaccctgacccctgcataaattatgca 24910517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 236
Target Start/End: Complemental strand, 25069573 - 25069538
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    |||||||||||||||||||||||||||| |||||||    
T  25069573 ttaaatatggagaagtggggtgttcggggttcgaac 25069538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 27234089 - 27234018
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||| ||| ||||| | ||||||||||| ||||||||||||||||||| | || | ||||||| ||||||    
T  27234089 agctcacacaatttaattgtggagaagtggagtgttcgggattcgaaccccggcccctgcatataatatgca 27234018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 33200151 - 33200068
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||| ||||||||| |||| || ||| ||||||||||| |||| ||||||| |||||| |||| |  |||||| ||||||||    
T  33200151 tagtggctgaagctcacacatatttaatgtggagaagtggagtgtccgggatttgaaccccgacccctacatatattatgcatt 33200068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 258
Target Start/End: Complemental strand, 35283621 - 35283534
Alignment:
Q  171 aagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatg 258  Q
    ||||||||||||||||  |||||| ||| || || | ||||||||||| |||||| || ||||||||| | |||| ||||||| ||||    
T  35283621 aagtagtttagtggttagagctcacacaattaaattgtggagaagtggagtgttcagggttcgaaccccggcctctgcatataatatg 35283534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 270
Target Start/End: Complemental strand, 50103956 - 50103881
Alignment:
Q  196 acattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca-ttgtctctac 270  Q
    ||||||||||| |||||||||| ||||| | || |||||||||||||| |  |||||| |||||| ||||||||||    
T  50103956 acattttaaatgtggagaagtgaggtgtccagggttcgaaccctgacccctacatatattatgcatttgtctctac 50103881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 3229661 - 3229731
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| |||||||||| ||||||||| ||||||||||| |  ||||||||| ||| |||| || ||||||    
T  3229661 gtcaagcagtttagtggctgaagctcacacattttaaatgtaaagaagtgggatgtccggggtttgaaccc 3229731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 12048071 - 12048141
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||||| ||||||||||||||    
T  12048071 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccgggattcgaaccc 12048141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 269
Target Start/End: Original strand, 33843185 - 33843243
Alignment:
Q  211 agaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctcta 269  Q
    |||||||||||||||||| ||||||||| |||||| ||||| | |||||| | ||||||    
T  33843185 agaagtggggtgttcggggttcgaaccccgacctctgcataaattatgcaatatctcta 33843243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 33950794 - 33950736
Alignment:
Q  211 agaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctcta 269  Q
    |||||||||||||||||| ||||||||| |||||| ||||| | |||||| | ||||||    
T  33950794 agaagtggggtgttcggggttcgaaccccgacctctgcataaattatgcaatatctcta 33950736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 12650331 - 12650416
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||||| |||  ||||||| |||||||| |||||||    
T  12650331 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggagttcgaactctgacctctgcatata 12650416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 27094287 - 27094332
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgtt 224  Q
    |||||||||||||||| ||||||||||| | |||||||| ||||||    
T  27094287 tagtggttgaagctcacacattttaaatgtagagaagtgaggtgtt 27094332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 270
Target Start/End: Original strand, 28653306 - 28653403
Alignment:
Q  173 gtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    ||||| |||||| |||| || | | ||||||| | |||||||||| | |||||||  ||||||||||||| || ||||||  ||||||||||| ||||    
T  28653306 gtagtctagtggctgaatcttacatattttaattttggagaagtgagatgttcggagttcgaaccctgacatcggcatatgttatgcattgtcactac 28653403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 285
Target Start/End: Complemental strand, 36795273 - 36795156
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    ||||||||| || ||| ||  |||||| ||||||||||||||||||||| | |||||| | ||||||| | ||||  |  |||||| |||||| ||||      
T  36795273 gtcaagtaggttggtgatttgagctcacacattttaaatatggagaagttgagtgttcagaattcgaaacatgactcctacatatattatgcaatgtcct 36795174  T
Q  268 tactgattgagttaaact 285  Q
    || | |||||||||||||    
T  36795173 taataattgagttaaact 36795156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 228
Target Start/End: Complemental strand, 40520387 - 40520346
Alignment:
Q  187 gaagctcatacattttaaatatggagaagtggggtgttcggg 228  Q
    |||||||||||||||||||| ||||||||| |||||| ||||    
T  40520387 gaagctcatacattttaaatgtggagaagtagggtgtccggg 40520346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 179 - 260
Target Start/End: Original strand, 42490368 - 42490449
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||  || ||| ||| ||||| | |||||||||||||||| |||| ||||||||| |||| | ||||||| ||||||    
T  42490368 tagtggttagagttcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccgacccctgcatataatatgca 42490449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 43021602 - 43021671
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    |||||| |||||||||||||||| || | ||||||||| |||| | ||||| | ||||||||||| ||||    
T  43021602 ttaaatgtggagaagtggggtgtccgaggttcgaaccccgacccctgcataaaatatgcattgtccctac 43021671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 45416158 - 45416195
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| |||||||||||||||| ||||||||||||||    
T  45416158 ttaaatgtggagaagtggggtgtccgggattcgaaccc 45416195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 47642929 - 47643014
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||  |||||| |  |||||| ||| ||||| | ||||||||||| ||||||||| ||||||||| | |||| |||||||    
T  47642929 gtcaagtagcatagtggctagagctcacacaatttaattgtggagaagtggagtgttcggggttcgaaccccggcctctgcatata 47643014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 50119062 - 50118977
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgagttaaactc 286  Q
    |||||| |||||||||||||||| |||| ||||||| | |||| | ||||| | |||| |||||| ||||  | ||||||||||||    
T  50119062 ttaaatgtggagaagtggggtgtccggggttcgaactccgacccctgcataaaatatggattgtccctaccaagtgagttaaactc 50118977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 258
Target Start/End: Complemental strand, 50746833 - 50746744
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatg 258  Q
    ||||||||| ||||||||  |||||  ||| ||||| | |||||||||||||||| |||| |||||| || ||||||  |||||| ||||    
T  50746833 tcaagtagtctagtggttagagctcgcacaatttaattgtggagaagtggggtgtccggggttcgaatcccgacctctacatataatatg 50746744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 52202283 - 52202340
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    ||||| ||| |||||||||||||||| |||| ||| ||||| |||||||| |||||||    
T  52202283 aagtgaggtattcgggattcgaaccccgaccccagtatatattatgcattatctctac 52202340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 2903047 - 2903087
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||||||||| ||||||||| |||||| |||||||    
T  2903047 aagtggggtgttcggggttcgaaccccgacctctgcatata 2903087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 10664742 - 10664833
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||||||| ||||| | ||||||||||| |||| |||| ||||||||| || ||| ||||||| ||||||    
T  10664742 gtcaagtagcctagtggctagagctcatacaatttaattgtggagaagtggagtgtccggggttcgaaccccga-ctctgcatataatatgca 10664833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 21265779 - 21265687
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||||| |||| ||||||||| | || | ||||||| ||||||    
T  21265779 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgca 21265687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 28503481 - 28503544
Alignment:
Q  172 agtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    |||||| |||||||| ||||||| ||||||||| | || |||||| |||||| ||||||||||||    
T  28503481 agtagtctagtggttaaagctcacacattttaa-tgtgaagaagtagggtgtccgggattcgaac 28503544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 34562767 - 34562803
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  34562767 ttaaatatggagaagtggggtgtccggggttcgaacc 34562803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 45371815 - 45371767
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||| ||| ||||| |||||||||||| ||||||||| |||||||||    
T  45371815 agctcacacaatttaattatggagaagtgtggtgttcggaattcgaacc 45371767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 48897064 - 48897156
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  ||||||||  |||||| ||| || || ||||||||||||| |||| |||  ||||||||||| || | ||||||| ||||||    
T  48897064 gtcaagtagcctagtggttagagctcacacaattaaattatggagaagtggagtgtccggtgttcgaaccctggcccctgcatataatatgca 48897156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 18904388 - 18904294
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||| ||||| |||||| || |||||| ||||||||||| |||||||||||||||| |||| ||||||||| |||| | |||||||  |||||||    
T  18904388 gtcaggtagtctagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccccgacccctgcatataaaatgcatt 18904294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 7545452 - 7545360
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||||||||||||| ||||||||||| || | ||||||| ||||||    
T  7545452 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggggtgttcggggttcgaaccctggcccctgcatataatatgca 7545360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 7897083 - 7897159
Alignment:
Q  186 tgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||||||| ||| || |||||||||||||||||||| |||| ||||||||| |||| | ||||||| ||||||||    
T  7897083 tgaagctcatgcatctttaatatggagaagtggggtgtccggggttcgaaccccgacccctgcatatattatgcatt 7897159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Original strand, 31980909 - 31980973
Alignment:
Q  171 aagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaa 235  Q
    |||||| || ||||||| |||||| |||||||||| ||||||||||| |||||| ||||||||||    
T  31980909 aagtaggttggtggttggagctcacacattttaaacatggagaagtgaggtgtttgggattcgaa 31980973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Original strand, 32621540 - 32621599
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| ||||||||||||||||  |||||||||||||    
T  32621540 tagtggctggagctcacacattttaaatgtggagaagtggggtgtctgggattcgaaccc 32621599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 282
Target Start/End: Original strand, 6196296 - 6196410
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    |||||||| |||||||||| ||||||| ||||||||||  |||||||||| | |||  ||  ||||||||| |||| |  |||||| |||||||||||      
T  6196296 gtcaagtaatttagtggttaaagctcacacattttaaacgtggagaagtgagatgtatggagttcgaacccggacccctacatatattatgcattgtcct 6196395  T
Q  268 tactgattgagttaa 282  Q
    ||| || ||||||||    
T  6196396 taccgactgagttaa 6196410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 19618673 - 19618743
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||  ||||||||  |||||||||| ||||| | |||||||||||||||| |||| |||||||||    
T  19618673 gtcaagtagcctagtggttcgagctcatacaatttaattgtggagaagtggggtgtccggggttcgaaccc 19618743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 29619160 - 29619217
Alignment:
Q  171 aagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcggg 228  Q
    |||||| || |||||||||||||| |||||||||| |||||||| || ||||||||||    
T  29619160 aagtagattggtggttgaagctcacacattttaaacatggagaaatgaggtgttcggg 29619217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 288
Target Start/End: Complemental strand, 9329741 - 9329701
Alignment:
Q  248 catatactatgcattgtctctactgattgagttaaactcac 288  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  9329741 catatattatgcattgtctctgctgattgagttaaactcac 9329701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 28222985 - 28222894
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  ||||||||  |||||| ||| ||||| ||||||||||||| |||| |||| ||||||||| | |||| ||||||| ||||||    
T  28222985 gtcaagtagcctagtggttagagctcacacaatttaattatggagaagtggagtgtccggg-ttcgaaccccggcctctgcatataatatgca 28222894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 245
Target Start/End: Original strand, 9689265 - 9689327
Alignment:
Q  182 tggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctc 245  Q
    ||||||||||||| |||||| |||||||||| |||||||||| | || ||||||||| ||||||    
T  9689265 tggttgaagctcacacattt-aaatatggaggagtggggtgtccagggttcgaaccccgacctc 9689327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 32616496 - 32616437
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| |||||||||||   |||||||||||||| ||||||||||||||    
T  32616496 tagtggctggagctcacacattttaaatgcagagaagtggggtgtccgggattcgaaccc 32616437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 251
Target Start/End: Original strand, 34574133 - 34574184
Alignment:
Q  200 tttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcata 251  Q
    ||||||| ||||||||||||||||||||| || |||||| |||||| |||||    
T  34574133 tttaaatgtggagaagtggggtgttcggggtttgaaccccgacctctgcata 34574184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 22574993 - 22574923
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| ||||||||  |||||| ||| ||||| | ||||||||||| |||| |||| |||||||||    
T  22574993 gtcaagtagtctagtggttagagctcacacaatttaattgtggagaagtggagtgtgcggggttcgaaccc 22574923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 288
Target Start/End: Original strand, 978083 - 978201
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctc 267  Q
    ||||||||| |||||||||  | ||||  || ||||| | |||||||||||||||| |||  ||||||||| |||| | ||||||| |||||| | || |    
T  978083 gtcaagtagcttagtggttagaactca--caatttaattgtggagaagtggggtgtccggtgttcgaaccccgacccctgcatataatatgcaatatccc 978180  T
Q  268 tactgattgagttaaactcac 288  Q
    |||| | |||| |||||||||    
T  978181 tactaactgagctaaactcac 978201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 2251930 - 2251869
Alignment:
Q  199 ttttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||| |||||||||||||||| |||| ||||||||| | || | ||||||| ||||||    
T  2251930 ttttaaatgtggagaagtggggtgtccggggttcgaaccccggcccctgcatatagtatgca 2251869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 238
Target Start/End: Original strand, 12524966 - 12525003
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  12524966 ttaaatatggagaagtgggatgttcggggttcgaaccc 12525003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 22389770 - 22389823
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatatact-atgcattgtc 265  Q
    ||||||||||| ||||||||||||||||||| | ||||||| | ||||||||||    
T  22389770 aagtggggtgtccgggattcgaaccctgacccctgcatataataatgcattgtc 22389823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 24373730 - 24373771
Alignment:
Q  247 gcatatactatgcattgtctctactgattgagttaaactcac 288  Q
    ||||||| ||||||||||||||||  ||||||||||||||||    
T  24373730 gcatatattatgcattgtctctaccaattgagttaaactcac 24373771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 30504602 - 30504534
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    ||||||||| |||||||||  |||||| ||| || ||||||||| ||||| ||||||||| |||||||||    
T  30504602 gtcaagtagcttagtggttagagctcacacaatt-aaatatggataagtgaggtgttcggaattcgaacc 30504534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 10483504 - 10483568
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||| ||||| | ||||||||||| |||| |||| ||||||||| |||| | |||||||    
T  10483504 agctcatacaatttaattgtggagaagtggagtgtccggggttcgaaccccgacccctgcatata 10483568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 15091531 - 15091479
Alignment:
Q  208 tggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||||||||| |||||||||||||| | || | ||||||| ||||||    
T  15091531 tggagaagtggggtgtccgggattcgaaccccggcccctgcatataatatgca 15091479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 20568277 - 20568329
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtc 265  Q
    |||||||||||||||| ||||||||| |||| | ||||||| |||||| ||||    
T  20568277 aagtggggtgttcggggttcgaaccccgacccctgcatatattatgcaatgtc 20568329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 270
Target Start/End: Complemental strand, 20846151 - 20846067
Alignment:
Q  186 tgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    ||||| ||| ||||||||||| | |||||||| |||||   || |||||||||  ||| | ||||||| ||||||||||||||||    
T  20846151 tgaagttcacacattttaaatgtagagaagtgtggtgtatagggttcgaaccccaaccactgcatatattatgcattgtctctac 20846067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 29646699 - 29646747
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtg 217  Q
    |||||||| ||||| ||||||||||| ||||||||||| | ||||||||    
T  29646699 tcaagtagcttagtagttgaagctcacacattttaaatgtagagaagtg 29646747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Original strand, 32141989 - 32142053
Alignment:
Q  174 tagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||| |||||| || |||||| ||||||||||| |||| |||||||||||  ||| |||||||||    
T  32141989 tagtctagtggctggagctcacacattttaaatgtggaaaagtggggtgtctggggttcgaaccc 32142053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 39)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 269
Target Start/End: Complemental strand, 7948488 - 7948394
Alignment:
Q  174 tagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctcta 269  Q
    |||| ||||||||||||| || |||| ||||||||| ||||||| ||||||||||||||||||||  ||| | ||||||| |||| | ||||||||    
T  7948488 tagtctagtggttgaagc-cacacatattaaatatgaagaagtgtggtgttcgggattcgaaccccaacccctgcatatattatgtaatgtctcta 7948394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 168 - 262
Target Start/End: Complemental strand, 34873209 - 34873115
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    ||||| |||| |||||| || |||||| ||||||||||| |||||||||||||||| || | ||||||||| |||| | |||||||  |||||||    
T  34873209 gtcaaatagtctagtggctggagctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacccctgcatataaaatgcatt 34873115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 32258130 - 32258061
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||||||||||||||||  |||||| ||| ||||| | |||||||||||||||| | |||||||||||    
T  32258130 gtcaagtagtttagtggttagagctcacacaatttaattgtggagaagtggggtgtccaggattcgaacc 32258061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 11406626 - 11406718
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||| |||||||||| ||| ||| ||||||||||| |||||||||| ||||| | || |||||||| ||||| |  |||||| ||||||    
T  11406626 gtcaagtaatttagtggttaaagttcacacattttaaatgtggagaagtgaggtgtccagggttcgaaccttgacccccacatataatatgca 11406718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 204 - 260
Target Start/End: Original strand, 26192699 - 26192755
Alignment:
Q  204 aatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||||||||||||| |||| ||||||||| |||||| ||||||| ||||||    
T  26192699 aatatggagaagtggggtgtccggggttcgaaccccgacctctgcatataatatgca 26192755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 27077044 - 27077136
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  || |||||  |||||| ||| ||||| | |||||||||||||||| |||||||||||||| |||| | ||||||| ||||||    
T  27077044 gtcaagtagcctaatggttcgagctcacacaatttaattgtggagaagtggggtgtccgggattcgaaccccgacccctgcatataatatgca 27077136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 180 - 268
Target Start/End: Complemental strand, 30300440 - 30300352
Alignment:
Q  180 agtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctct 268  Q
    |||| ||| |||||| ||||||||||||||||||||| |||| | |||| ||||||||| | || | ||||||| ||||||| ||||||    
T  30300440 agtgtttggagctcacacattttaaatatggagaagtagggtttccggggttcgaaccccggcccctgcatatattatgcatcgtctct 30300352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 26217914 - 26217859
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    |||||||||||||||||||| || ||| ||||||||||| |||||||||| |||||    
T  26217914 gtcaagtagtttagtggttggagatcacacattttaaatgtggagaagtgaggtgt 26217859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 31024406 - 31024347
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| |||||||||||||||| |||| |||||||||    
T  31024406 tagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaaccc 31024347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 33810763 - 33810668
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattg 263  Q
    ||||| ||| ||||||| || |||||| ||||||||||| |||||||||||||||| |||| || |||||| | || | |||||||  ||||||||    
T  33810763 gtcaaatagcttagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggtttgaaccccggcccctgcatataaaatgcattg 33810668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 36035137 - 36035220
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||| || |||||| ||||||||||| |||||||||||||||| || | ||||||||| |||| | |||||||  |||||||    
T  36035137 tagtggctggagctcacacattttaaatgtggagaagtggggtgtccgaggttcgaaccccgacccctgcatataaaatgcatt 36035220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 21548444 - 21548514
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||  |||||| |  |||||| ||||||||| | ||||||||||||||||||||| |||||||||    
T  21548444 gtcaagtagcctagtggctagagctcacacattttaattgtggagaagtggggtgttcggggttcgaaccc 21548514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 179 - 237
Target Start/End: Original strand, 44053398 - 44053456
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||| || |||||| ||||||||||| |||||||||||||||| |||| ||||||||    
T  44053398 tagtggctggagctcacacattttaaatgtggagaagtggggtgtccggggttcgaacc 44053456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 201 - 270
Target Start/End: Original strand, 30676284 - 30676353
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    |||||| ||||||| ||||||||| ||||||||||||||||||||  |||| | ||| || |||||||||    
T  30676284 ttaaatgtggagaaatggggtgtttgggattcgaaccctgacctctacataaattatacaatgtctctac 30676353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 220382 - 220422
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  220382 aagtggggtgtccgggattcgaaccctgacctctgcatata 220422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 689537 - 689577
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  689537 aagtggggtgtccgggattcgaaccctgacctctgcatata 689577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 734005 - 734045
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  734005 aagtggggtgtccgggattcgaaccctgacctctgcatata 734045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Original strand, 857901 - 857941
Alignment:
Q  213 aagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    ||||||||||| ||||||||||||||||||||| |||||||    
T  857901 aagtggggtgtccgggattcgaaccctgacctctgcatata 857941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 289
Target Start/End: Complemental strand, 13105193 - 13105093
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgagttaaactcac 288  Q
    |||||| ||||||||||| ||||||||||||||||  | | ||||||||| | ||   ||||||| ||||||||||| ||||  | |||||||| |||||    
T  13105193 agctcacacattttaaatgtggagaagtggggtgtctgaggttcgaaccccggcccttgcatatattatgcattgtccctaccaactgagttaatctcac 13105094  T
Q  289 a 289  Q
    |    
T  13105093 a 13105093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 17072510 - 17072602
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||| ||| ||||| | ||||||||||||||||||||| ||||||||| | || | ||||||| ||||||    
T  17072510 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgttcggggttcgaaccccggcccctgcatataatatgca 17072602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 17575761 - 17575669
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||| ||| ||||| | ||||||||||||||||||||| ||||||||| | || | ||||||| ||||||    
T  17575761 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgttcggggttcgaaccccggcccctgcatataatatgca 17575669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Original strand, 42801596 - 42801692
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgt 264  Q
    |||||||||| ||||||||  | |||| ||| ||||| |||||||||||||||||| || | ||||||||| |||| |  |||||| ||| ||||||    
T  42801596 gtcaagtagtctagtggttagaactcacacaatttaattatggagaagtggggtgtccgaggttcgaaccccgacccctacatataatatacattgt 42801692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 236
Target Start/End: Complemental strand, 44615803 - 44615735
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    ||||||||||||||||| |||| |||| ||||||||||| || |||| || ||||| |||| |||||||    
T  44615803 gtcaagtagtttagtggctgaaactcacacattttaaatgtgaagaaatgaggtgtccggggttcgaac 44615735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 260
Target Start/End: Complemental strand, 2792901 - 2792810
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||| ||||||||| |||||| ||| || || | ||||||||||| |||| |||| ||||||||| | || | ||||||| ||||||    
T  2792901 tcaagtagtctagtggttggagctcacacaattaaattgtggagaagtggagtgtccggggttcgaaccccggcccctgcatataatatgca 2792810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 186 - 253
Target Start/End: Complemental strand, 36540392 - 36540325
Alignment:
Q  186 tgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    ||||||||| ||| ||||| ||||||||||||| ||||| ||| ||||||||| |||| | |||||||    
T  36540392 tgaagctcacacaatttaattatggagaagtggagtgtttggggttcgaaccccgacccctgcatata 36540325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 291
Target Start/End: Original strand, 37535486 - 37535569
Alignment:
Q  208 tggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctactgattgagttaaactcacaga 291  Q
    ||||||| ||| |||| |||| ||||||||||||| || ||||||| |||||| | || ||||  |||||| ||||||||||||    
T  37535486 tggagaaatggagtgtccggggttcgaaccctgacttctgcatataatatgcaatatccctaccaattgagctaaactcacaga 37535569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 37708803 - 37708744
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| || |||||| ||||||||||| |||||||||||| ||| |||| |||||||||    
T  37708803 tagtggctggagctcacacattttaaatgtggagaagtgggatgtccggggttcgaaccc 37708744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 265
Target Start/End: Complemental strand, 550412 - 550327
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtc 265  Q
    ||||||||| |||||| |||||| |||| || |||||||| ||||||| ||||||||||| |||| | ||||| | |||||| ||||    
T  550412 tagtggttggagctcacacattt-aaatgtgaagaagtggagtgttcgagattcgaaccccgacccctgcataaattatgcaatgtc 550327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 253
Target Start/End: Original strand, 9813011 - 9813073
Alignment:
Q  191 ctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||||||||| |||||||||| |||||  | ||||||||| | |||||| |||||||    
T  9813011 ctcatacattttaaatgtggagaagtgaggtgtctgagattcgaactccgacctctgcatata 9813073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Complemental strand, 10083252 - 10083194
Alignment:
Q  202 taaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||||||||||||||| |||| ||||||||  |||| | ||||||| ||||||    
T  10083252 taaatatggagaagtggggtgtccggggttcgaacctcgacccctgcatataatatgca 10083194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 13059124 - 13059194
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||  |||||| || ||| || ||||||||||| ||||||||||||||||  ||| |||||||||    
T  13059124 gtcaagtagcctagtggctggagcacacacattttaaatgtggagaagtggggtgtcaggggttcgaaccc 13059194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 24517418 - 24517348
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| || ||| |||| |||| |||||||||||||| ||||||||| || | ||| |||||||||    
T  24517418 gtcaagtagtctaatggctgaaactcacacattttaaatatgcagaagtgggatggtaggggttcgaaccc 24517348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 8183422 - 8183373
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| |||||||||||||||||||||||| |||  ||| |||||||||    
T  8183422 agctcacacattttaaatatggagaagtgggttgtctggggttcgaaccc 8183373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 253
Target Start/End: Original strand, 9187170 - 9187255
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||||  |||||| |  |||||| ||| ||||| | ||||||||||| ||||| ||| ||||||||| |||| |||||||||    
T  9187170 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggagtgttgggggttcgaaccccgaccccagcatata 9187255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 29547477 - 29547424
Alignment:
Q  178 ttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggatt 231  Q
    ||||||| |||| |||| ||| || ||||||||||||||||||||| |||||||    
T  29547477 ttagtggctgaaactcacacaattcaaatatggagaagtggggtgtccgggatt 29547424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 216
Target Start/End: Complemental strand, 2426475 - 2426427
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagt 216  Q
    ||||| |||||||||||||| |||||| |||||||||||  ||||||||    
T  2426475 gtcaactagtttagtggttggagctcacacattttaaattaggagaagt 2426427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 8265351 - 8265299
Alignment:
Q  208 tggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||||| |||| |||| |||||||||||||| | ||||||| ||||||    
T  8265351 tggagaagtggagtgtccggggttcgaaccctgacccctgcatataatatgca 8265299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 34761062 - 34761022
Alignment:
Q  196 acattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    ||||||||||||||| |||||||||||| |||| |||||||    
T  34761062 acattttaaatatggtgaagtggggtgtccggggttcgaac 34761022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 40904648 - 40904584
Alignment:
Q  174 tagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||| |||||| ||||||||  ||||||||||| |||||||||| ||||| || | |||||||||    
T  40904648 tagtctagtggctgaagctcgcacattttaaatgtggagaagtgaggtgtccgaggttcgaaccc 40904584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Original strand, 18503427 - 18503496
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||||||  |||||||| ||||||| ||||||||||| ||||||||||||||||  ||| ||||||||    
T  18503427 gtcaagtagcctagtggttaaagctcacacattttaaatgtggagaagtggggtgtctggggttcgaacc 18503496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 4232550 - 4232605
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgt 223  Q
    ||||| |||| ||||||||| |||||||||||||||||| |||||||| |||||||    
T  4232550 gtcaaatagtctagtggttggagctcatacattttaaatgtggagaagcggggtgt 4232605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 265
Target Start/End: Original strand, 28735187 - 28735270
Alignment:
Q  182 tggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtc 265  Q
    |||||||| |||| |||||||||||||||||||||||| |||   | ||||||||   |||||| ||||||| |||||||||||    
T  28735187 tggttgaaactcacacattttaaatatggagaagtgggatgtctagaattcgaacttcgacctctgcatatattatgcattgtc 28735270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 40200828 - 40200770
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| ||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||    
T  40200828 tagtggctgaagctcacacattttaaatatggagaagtggagtg-tcggggttcgaaccc 40200770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 243
Target Start/End: Complemental strand, 22548301 - 22548259
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacc 243  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  22548301 ttaaatgtggagaagtggggtgttcggggttcgaaccctgacc 22548259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 28501280 - 28501222
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcg 226  Q
    |||||||||||||||||||  |||||| ||| ||||| | |||||||||||||||||||    
T  28501280 gtcaagtagtttagtggttagagctcacacaatttaattgtggagaagtggggtgttcg 28501222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 173 - 262
Target Start/End: Original strand, 47440762 - 47440851
Alignment:
Q  173 gtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    ||||| |||||| || |||||| |||| || ||| |||||||||||||||| | || ||||||||| |||| | ||||||| ||||||||    
T  47440762 gtagtctagtggctggagctcacacatatttaatgtggagaagtggggtgtccagggttcgaaccccgacccctgcatatattatgcatt 47440851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 235
Target Start/End: Complemental strand, 9684743 - 9684678
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaa 235  Q
    ||||||||||||||||||| ||||||  ||||||||||| || ||||||||  |||||||| ||||||    
T  9684743 gtcaagtagtttagtggttaaagctc--acattttaaatgtgaagaagtggaatgttcggggttcgaa 9684678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 260
Target Start/End: Original strand, 9712165 - 9712237
Alignment:
Q  188 aagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||| ||| ||||| | |||||||||||||||| |||| ||||||||| |||| | ||||||| ||||||    
T  9712165 aagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccgacccctgcatataatatgca 9712237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 260
Target Start/End: Complemental strand, 12428293 - 12428221
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcggga-ttcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||||||||||| ||||||||| ||||||| |||| |||||||||  ||| | ||||||| ||||||    
T  12428293 agctcatacattttaaatgtggagaagttgggtgtttgggagttcgaaccccaacccctgcatataatatgca 12428221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 28800210 - 28800154
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcata-cattttaaatatggagaagtggggtgt 223  Q
    |||||||||| |||||||||||||||| | | |||||||| ||||||||||||||||    
T  28800210 gtcaagtagtctagtggttgaagctcacacctttttaaatgtggagaagtggggtgt 28800154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 30940854 - 30940802
Alignment:
Q  208 tggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||||||||| ||||||||||||||||||| | |||| ||||||| ||||||    
T  30940854 tggagaagtggtgtgttcgggattcgaaccccggcctctgcatataatatgca 30940802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 41465924 - 41465865
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||| |||||||||||||||| |||  |||||||||||||| | ||||||| ||||||    
T  41465924 ttaaatgtggagaagtggggtgtccggagttcgaaccctgacccctgcatataatatgca 41465865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 179 - 262
Target Start/End: Complemental strand, 46758354 - 46758271
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    |||||| || |||||| ||||||||||| ||||| |||||||||| |||  ||||||||| |||| | |||||||  |||||||    
T  46758354 tagtggctggagctcacacattttaaatgtggaggagtggggtgtccggagttcgaaccccgacccctgcatataaaatgcatt 46758271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 260
Target Start/End: Original strand, 1398884 - 1398942
Alignment:
Q  202 taaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    ||||| |||||||||||||||| |||||||||||||| | || | ||||||| ||||||    
T  1398884 taaatgtggagaagtggggtgtccgggattcgaaccccggcccctgcatataatatgca 1398942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 15639375 - 15639445
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| |||||  || |||| | ||||||||| | ||| |||||||||||| ||||||||||||||    
T  15639375 gtcaagtagtatagtgactggagcttacacattttaactgtggggaagtggggtgtacgggattcgaaccc 15639445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 24061276 - 24061346
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||||||| |||||| |  |||||| ||| ||||| | ||||||||||| ||||||||| |||||||||    
T  24061276 gtcaagtagtctagtggctagagctcacacaatttaattgtggagaagtggagtgttcggggttcgaaccc 24061346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 29461773 - 29461882
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc-ctgacctcagcatatactatgcattgtctctactgattga 277  Q
    |||||| || |||| | ||||||||||||| || ||||||||||| | || |||||||| | |||| | ||||||| ||||||||||| ||||  | |||    
T  29461773 tagtggatggagcttacacattttaaatatagaaaagtggggtgtccagg-ttcgaacctccgacccctgcatatattatgcattgtccctaccaactga 29461871  T
Q  278 gttaaactcac 288  Q
    |||||||||||    
T  29461872 gttaaactcac 29461882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 35005511 - 35005457
Alignment:
Q  181 gtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaa 235  Q
    |||||||||||||| |||||||||| || ||||||||  ||||| ||||||||||    
T  35005511 gtggttgaagctcacacattttaaacatagagaagtgaagtgtttgggattcgaa 35005457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 37710198 - 37710140
Alignment:
Q  178 ttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    ||||| |||| |||||| ||||||||||| |||||||||| | |||||| |||||||||    
T  37710198 ttagttgttggagctcacacattttaaatgtggagaagtgagatgttcgtgattcgaac 37710140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 179 - 265
Target Start/End: Original strand, 41331038 - 41331123
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtc 265  Q
    |||||||| ||||||| ||| || |||| |||||||||||||||| ||| |||||||||| |||| | ||||| | |||||| ||||    
T  41331038 tagtggttaaagctcacacaatt-aaatgtggagaagtggggtgtccggaattcgaaccccgacccctgcataaattatgcaatgtc 41331123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Original strand, 42433039 - 42433085
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaa 214  Q
    |||||||||||||||||||  |||| | |||||||||||||||||||    
T  42433039 gtcaagtagtttagtggttagagcttacacattttaaatatggagaa 42433085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 238
Target Start/End: Original strand, 42798284 - 42798334
Alignment:
Q  188 aagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    ||||||| ||||||||||| ||||||||| ||||||||||  |||||||||    
T  42798284 aagctcacacattttaaatgtggagaagtcgggtgttcggagttcgaaccc 42798334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 10901768 - 10901699
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    |||||||||  |||||  || |||||| ||||| ||||| ||||||||||||||||| ||| ||||||||    
T  10901768 gtcaagtagcctagtgactggagctcacacattataaatgtggagaagtggggtgttaggggttcgaacc 10901699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 260
Target Start/End: Original strand, 33996831 - 33996920
Alignment:
Q  171 aagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||||||| |  |||||| ||| ||||| ||||||||||||| |||| | || ||||||||| |||  | ||||||| ||||||    
T  33996831 aagtagtttagtggctagagctcacacaatttaattatggagaagtggagtgtccagggttcgaaccccgactcctgcatataatatgca 33996920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 288
Target Start/End: Original strand, 43404309 - 43404350
Alignment:
Q  247 gcatatactatgcattgtctctactgattgagttaaactcac 288  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||    
T  43404309 gcatatactatacattgtctctactaattgagttaaattcac 43404350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 46645811 - 46645762
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| ||||||||||| ||||| |||||||||| |||| |||||||||    
T  46645811 agctcacacattttaaatgtggaggagtggggtgtccggggttcgaaccc 46645762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 47999882 - 47999833
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccc 238  Q
    |||||| ||| ||||| ||||||||||||| |||| ||||||||||||||    
T  47999882 agctcacacaatttaattatggagaagtggagtgtccgggattcgaaccc 47999833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 262
Target Start/End: Original strand, 20101629 - 20101693
Alignment:
Q  198 attttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcatt 262  Q
    ||||||||||||||||||| |||||| |||  ||||||||| | || | ||||||| ||||||||    
T  20101629 attttaaatatggagaagtagggtgtccggagttcgaaccccggcccctgcatataatatgcatt 20101693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 28424278 - 28424370
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||| ||||||||  |||||| ||| ||||| | || ||||||||||| | |||| ||||||||  | |||| ||||||| ||||||    
T  28424278 gtcaagtagtctagtggttagagctcacacaatttaattgtgaagaagtggggtttccggggttcgaacctcgtcctctgcatataatatgca 28424370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 28799967 - 28800023
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacatttt-aaatatggagaagtggggtgt 223  Q
    |||||||||| ||||||||| |||||| ||||||| |||| | ||||||||||||||    
T  28799967 gtcaagtagtctagtggttggagctcacacatttttaaatgtagagaagtggggtgt 28800023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 28805423 - 28805339
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatat 252  Q
    |||||||||| ||||||||  ||||||  || ||||| | |||||||||||||||| |||| ||| ||||| |||| | ||||||    
T  28805423 gtcaagtagtctagtggttagagctcactcaatttaattgtggagaagtggggtgtccggggttctaaccccgacccctgcatat 28805339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 253
Target Start/End: Original strand, 41913732 - 41913796
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatata 253  Q
    |||||||| | ||||| ||| ||||||||| |||| |||| |||||||||||||| | |||||||    
T  41913732 agctcatataatttaattatagagaagtggagtgtccggggttcgaaccctgacccctgcatata 41913796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 264
Target Start/End: Original strand, 43159316 - 43159389
Alignment:
Q  189 agctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgt 264  Q
    |||||| ||||||||||| ||||||| || | |||||||| || |||||||||  || |||||||||||| |||||    
T  43159316 agctcagacattttaaatgtggagaaatgagatgttcggggtttgaaccctga--tcggcatatactatgtattgt 43159389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 236
Target Start/End: Complemental strand, 315771 - 315704
Alignment:
Q  169 tcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaac 236  Q
    ||||||||||||||||||  || ||| ||||||||||| |||||||||||| ||| |||| |||||||    
T  315771 tcaagtagtttagtggttagagttcacacattttaaatgtggagaagtgggatgtccggggttcgaac 315704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 260
Target Start/End: Complemental strand, 23483 - 23392
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  ||||||||  |||||| ||| ||||| ||||||||||||| |||| |||| ||||||||| | |||| ||||||| ||||||    
T  23483 gtcaagtagcctagtggttagagctcacacaatttaattatggagaagtggagtgtccggg-ttcgaaccccggcctctgcatataatatgca 23392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0250 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 15095 - 15026
Alignment:
Q  201 ttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgcattgtctctac 270  Q
    |||||| ||||||||||||||||| ||| |||||||| ||||| | ||||| | |||||| |||| ||||    
T  15095 ttaaatgtggagaagtggggtgtttggggttcgaaccatgacccctgcataaattatgcaatgtccctac 15026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0148 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0148
Description:

Target: scaffold0148; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 237
Target Start/End: Complemental strand, 9292 - 9247
Alignment:
Q  192 tcatacattttaaatatggagaagtggggtgttcgggattcgaacc 237  Q
    ||||| ||||||||| ||||||||||||||||||||| ||| ||||    
T  9292 tcataaattttaaatgtggagaagtggggtgttcggggttcaaacc 9247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 260
Target Start/End: Original strand, 10773 - 10865
Alignment:
Q  168 gtcaagtagtttagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacctcagcatatactatgca 260  Q
    |||||||||  |||||| |  |||||| ||| ||||| | |||||||||||||||| |||| ||||||||| | || | ||||||| ||||||    
T  10773 gtcaagtagcctagtggctagagctcacacaatttaattgtggagaagtggggtgtccggggttcgaaccccggcccctgcatataatatgca 10865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 236316 - 236379
Alignment:
Q  179 tagtggttgaagctcatacattttaaatatggagaagtggggtgttcgggattcgaaccctgacc 243  Q
    |||||||| ||||||| ||||||||| | |||| ||||||||||| |||| ||||||||| ||||    
T  236316 tagtggttaaagctcacacattttaa-tgtggataagtggggtgtccggggttcgaaccccgacc 236379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University