View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11572_high_6 (Length: 306)
Name: NF11572_high_6
Description: NF11572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11572_high_6 |
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| [»] scaffold0287 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 3619947 - 3620223
Alignment:
| Q |
19 |
ctctcttggggctaggggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaac |
118 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3619947 |
ctctctaggggctagtggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaaacttttgaatatcatcttcatctatgaac |
3620046 |
T |
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| Q |
119 |
tcttttttgatgtttctaatttcttcttgagctttcttcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcacttgtgt |
218 |
Q |
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| T |
3620047 |
tcttttttgatgtttctaatttcttcttgagctttcttcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcacttgtgt |
3620146 |
T |
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| Q |
219 |
cagtagctgctacaagtagattctgtgatcatta-----aaagcaaagcaaataattaggacattatatctatgttc |
290 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3620147 |
cagtagctgctacaagtagattctgtgatcattaaaagcaaagcaaagcaaataattaggacattatatctatgttc |
3620223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 3630323 - 3630565
Alignment:
| Q |
19 |
ctctcttggggctaggggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaac |
118 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
3630323 |
ctctcttggggctagtggtgctggtgcatagaatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaac |
3630422 |
T |
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| Q |
119 |
tcttttttg------atgtttctaatttcttcttgagctttcttcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcac |
212 |
Q |
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| T |
3630423 |
tcttttttgccacatatgtttctaatttcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaag |
3630522 |
T |
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| Q |
213 |
ttgtgtcagtagctgctacaagtagattctgtgatcattaaaa |
255 |
Q |
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| T |
3630523 |
ttgtgtcggtagctgcgacaagtaggttctgtgatcatcaaaa |
3630565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0287 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: scaffold0287
Description:
Target: scaffold0287; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 15762 - 15520
Alignment:
| Q |
19 |
ctctcttggggctaggggtgctggtgaatagaatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaac |
118 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
15762 |
ctctcttggggctagtggtgctggtgcatagaatcttaatgtttcttttatcacagccttaagatatacaagcttttgaatatcatcttcatctatgaac |
15663 |
T |
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| Q |
119 |
tcttttttg------atgtttctaatttcttcttgagctttcttcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgcac |
212 |
Q |
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| T |
15662 |
tcttttttgccacatatgtttctaatttcttcttgagctttcttcattgctcttggattcttcattaatccagtcatcgcccaaaccgatgtggctgaag |
15563 |
T |
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| Q |
213 |
ttgtgtcagtagctgctacaagtagattctgtgatcattaaaa |
255 |
Q |
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| T |
15562 |
ttgtgtcggtagctgcgacaagtaggttctgtgatcatcaaaa |
15520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 8979268 - 8979192
Alignment:
| Q |
50 |
aatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttttt |
126 |
Q |
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| T |
8979268 |
aatcttaatgtctcttttatcactgccttcaaatatagagaattttgaatatcatcttcatctaaaaaatctttttt |
8979192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 210
Target Start/End: Original strand, 8966432 - 8966598
Alignment:
| Q |
50 |
aatcttaatgtctcttttatcacagccttaaaatatacaagcttttgaatatcatcttcatctatgaactctttttt------gatgtttctaatttctt |
143 |
Q |
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| T |
8966432 |
aatctcaacgtctcttttatcactgcctttaaatatgggaaattttgaatatcattttcgtctatgaattcttttttacttcccaagtttctaatttctt |
8966531 |
T |
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| Q |
144 |
cttgagctttcttcattgctcttggattctttattaatccggtcatcacccaaactgatgtggctgc |
210 |
Q |
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| T |
8966532 |
cttgtactttcttcattactcttgggttttttatcagggaggttatagcccaaactgatgtggctgc |
8966598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 92 - 209
Target Start/End: Original strand, 20074255 - 20074378
Alignment:
| Q |
92 |
ttttgaatatcatcttcatctatgaactcttttttga----tg--tttctaatttcttcttgagctttcttcattgctcttggattctttattaatccgg |
185 |
Q |
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||||| ||||||||||||||||| || |||||||| | || |||||||| |||| ||| ||||||||||| |||||||||| ||||||||| | | |
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| T |
20074255 |
ttttgtatatcatcttcatctataaattcttttttaacttttgaatttctaatctcttgttgtactttcttcattactcttggattttttattaatgcag |
20074354 |
T |
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| Q |
186 |
tcatcacccaaactgatgtggctg |
209 |
Q |
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|||| |||| |||| |||||||| |
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| T |
20074355 |
tcatagcccatactgttgtggctg |
20074378 |
T |
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