View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11572_low_3 (Length: 536)
Name: NF11572_low_3
Description: NF11572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11572_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 196 - 529
Target Start/End: Complemental strand, 493522 - 493189
Alignment:
| Q |
196 |
tacctgcattcctccacgttcaagagcaggagaattagcatcccctagtgccatcccagctgtataagtaagctcgttactgaactccgttttagttgca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
493522 |
tacctgcattcctccacgttcaagagcaggagaattagcatcccctagtgccatcccagctgtataagtaagctcgttactgaactccgttttagttgca |
493423 |
T |
|
| Q |
296 |
gtcaacgctgttgccaacaaagccatctgttctaatctcctctttgaatcatcacccggcacaatcagcaacagcttcctttcctttttcgaaatgacca |
395 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
493422 |
gtcaacgctgttgccaacgaagccatctgttctaatctcctctttgaatcatcacccggcacaatcagaaacagcttcctttcctttttcgaaatgacca |
493323 |
T |
|
| Q |
396 |
aacgactaccctgctttcacttcttccttacatctnnnnnnnnnnnnnnnnnnnnnnnttacaagtcttaacttcaatcccgaaaaaccaaatctaaatg |
495 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
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| T |
493322 |
aacgactaccctgctttcacttcttccttacatctaaaaacggaaagaaaaaaaaaaattacaaatcttaacttcaatcccaaaaaaccaaatctaaatg |
493223 |
T |
|
| Q |
496 |
cataaaacaacaggagttataaacatctgtgctc |
529 |
Q |
| |
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||| |||||||||||||||||||||||||||||| |
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| T |
493222 |
catgaaacaacaggagttataaacatctgtgctc |
493189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 19 - 131
Target Start/End: Complemental strand, 493699 - 493587
Alignment:
| Q |
19 |
ctacagtggaacgacattaacaggtagtccacagtagaatttgtcaagaaaccattcctcacacagaacacaactctactccaacaatcaacgttcacac |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
493699 |
ctacagtggaacgacattaacaggtagtccacagtagaatttgtcaagaaaccattcctcacacagaacacaactctactccaacgatcaacattcacac |
493600 |
T |
|
| Q |
119 |
tgagacgcttgct |
131 |
Q |
| |
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||||||||||||| |
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| T |
493599 |
tgagacgcttgct |
493587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 196 - 349
Target Start/End: Complemental strand, 489625 - 489472
Alignment:
| Q |
196 |
tacctgcattcctccacgttcaagagcaggagaattagcatcccctagtgccatcccagctgtataagtaagctcgttactgaactccgttttagttgca |
295 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||| | | ||||| |||| |||| |||||||| ||||||||||| |||||||| || |
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| T |
489625 |
tacctgcattcccccacgttcaagaacaggagaattagcatcccttggcgccattccaggcatatacgtaagctcattactgaactctgttttagtagct |
489526 |
T |
|
| Q |
296 |
gtcaacgctgttgccaacaaagccatctgttctaatctcctctttgaatcatca |
349 |
Q |
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|||||||| || |||||| | ||||||||||||||||||||||| |||||||| |
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| T |
489525 |
gtcaacgcggtcgccaacgacgccatctgttctaatctcctcttcaaatcatca |
489472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 214 - 430
Target Start/End: Complemental strand, 501095 - 500879
Alignment:
| Q |
214 |
ttcaagagcaggagaattagcatcccctagtgccatcccagctgtataagtaagctcgttactgaactccgttttagttgcagtcaacgctgttgccaac |
313 |
Q |
| |
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||||||||||| |||||| |||| || | ||||||| |||| |||| ||||| ||||||||||||||| ||| ||||||| |||||| | ||||| |
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| T |
501095 |
ttcaagagcagtagaatttgcattccttggtgccattccaggcatatatgtaagtgcgttactgaactccgctttggttgcagccaacgcattcaccaac |
500996 |
T |
|
| Q |
314 |
aaagccatctgttctaatctcctctttgaatcatcacccggcacaatcagcaacagcttcctttcctttttcgaaatgaccaaacgactaccctgctttc |
413 |
Q |
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||||||||||||||||||||||| | |||||| ||| |||||||| |||| || |||| || |||||||||| | ||| ||||||||||| |||||| |
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| T |
500995 |
gaagccatctgttctaatctcctcatagaatcagcactcggcacaaatggcaatagattccatttctttttcgaactcacccaacgactaccccgctttc |
500896 |
T |
|
| Q |
414 |
acttcttccttacatct |
430 |
Q |
| |
|
|||||||||||||||| |
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| T |
500895 |
tcttcttccttacatct |
500879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 203 - 350
Target Start/End: Complemental strand, 492666 - 492523
Alignment:
| Q |
203 |
attcctccacgttcaagagcaggagaattagcatcccctagtgccatcccagctgtataagtaagctcgttactgaactccgttttagttgcagtcaacg |
302 |
Q |
| |
|
||||||||| |||||||||||||||||||||| |||| | ||||||| ||| | ||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
492666 |
attcctccatgttcaagagcaggagaattagcttcccttggtgccatttcaggtatataagt----tcattactgaactcagttttagttgcagtcaacg |
492571 |
T |
|
| Q |
303 |
ctgttgccaacaaagccatctgttctaatctcctctttgaatcatcac |
350 |
Q |
| |
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|| ||||||| ||||||||| |||||||||||||| |||||||||| |
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| T |
492570 |
ctcttgccaatgaagccatctactctaatctcctcttagaatcatcac |
492523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 484 - 529
Target Start/End: Complemental strand, 490393 - 490348
Alignment:
| Q |
484 |
caaatctaaatgcataaaacaacaggagttataaacatctgtgctc |
529 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||| |
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| T |
490393 |
caaatctaaatgcatataacaacagtagttataaacatctgtgctc |
490348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 211 - 377
Target Start/End: Complemental strand, 8763271 - 8763105
Alignment:
| Q |
211 |
acgttcaagagcaggagaattagcatcccctagtgccatcccagctgtataagtaagctcgttactgaactccgttttagttgcagtcaacgctgttgcc |
310 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||| || |||| || | |||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
8763271 |
acgttcaatagcaggataattagcatccctcggtgctattccagacatagacgtaagctcgttactgaactccgctttggttgcagtcaacgctgttgcc |
8763172 |
T |
|
| Q |
311 |
aacaaagccatctgttctaatctcctctttgaatcatcacccggcacaatcagcaacagcttccttt |
377 |
Q |
| |
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||| | ||||||||||| ||||||||||| |||||| || |||||||| || ||||| |||||||| |
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| T |
8763171 |
aacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaacaacaacaacttccttt |
8763105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 211 - 377
Target Start/End: Complemental strand, 8768430 - 8768264
Alignment:
| Q |
211 |
acgttcaagagcaggagaattagcatcccctagtgccatcccagctgtataagtaagctcgttactgaactccgttttagttgcagtcaacgctgttgcc |
310 |
Q |
| |
|
|||||||| ||||||| |||||||||||| |||| || |||| || | |||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
8768430 |
acgttcaatagcaggataattagcatccctcggtgctattccagacatagacgtaagctcgttactgaactccgctttggttgcagtcaacgctgttgcc |
8768331 |
T |
|
| Q |
311 |
aacaaagccatctgttctaatctcctctttgaatcatcacccggcacaatcagcaacagcttccttt |
377 |
Q |
| |
|
||| | ||||||||||| ||||||||||| |||||| || |||||||| || ||||| |||||||| |
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| T |
8768330 |
aacgatgccatctgttcaaatctcctcttgaaatcattactcggcacaaacaacaacaacttccttt |
8768264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 485 - 529
Target Start/End: Original strand, 19124540 - 19124584
Alignment:
| Q |
485 |
aaatctaaatgcataaaacaacaggagttataaacatctgtgctc |
529 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||| |
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|
| T |
19124540 |
aaatctaaatgcatataacaacaatggttataaacatctgtgctc |
19124584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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