View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11572_low_7 (Length: 271)

Name: NF11572_low_7
Description: NF11572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11572_low_7
NF11572_low_7
[»] chr4 (53 HSPs)
chr4 (1-267)||(24683993-24684259)
chr4 (1-228)||(41083034-41083265)
chr4 (8-213)||(40395094-40395303)
chr4 (8-214)||(12498613-12498824)
chr4 (42-206)||(45038343-45038511)
chr4 (33-205)||(12592348-12592524)
chr4 (57-224)||(41083236-41083407)
chr4 (81-212)||(7245988-7246123)
chr4 (57-206)||(12498802-12498955)
chr4 (136-212)||(26782498-26782574)
chr4 (63-228)||(9999478-9999645)
chr4 (63-121)||(12592270-12592328)
chr4 (78-224)||(2470111-2470261)
chr4 (84-206)||(21321979-21322105)
chr4 (57-118)||(51950564-51950625)
chr4 (47-228)||(53863490-53863676)
chr4 (34-118)||(24369223-24369307)
chr4 (34-118)||(51950640-51950724)
chr4 (33-211)||(41519310-41519493)
chr4 (63-174)||(53863351-53863466)
chr4 (65-118)||(2787979-2788032)
chr4 (63-205)||(45787222-45787365)
chr4 (63-123)||(17232017-17232077)
chr4 (148-211)||(45038186-45038249)
chr4 (32-118)||(50290215-50290302)
chr4 (39-206)||(7246188-7246359)
chr4 (57-118)||(26782475-26782536)
chr4 (54-228)||(55617531-55617707)
chr4 (54-228)||(55624835-55625011)
chr4 (57-205)||(40146955-40147106)
chr4 (135-206)||(2469901-2469972)
chr4 (137-208)||(2788160-2788231)
chr4 (57-145)||(26782356-26782447)
chr4 (71-175)||(44057260-44057367)
chr4 (67-205)||(50290332-50290472)
chr4 (136-206)||(12592395-12592465)
chr4 (136-177)||(2787976-2788017)
chr4 (137-209)||(24684254-24684324)
chr4 (136-209)||(40147167-40147240)
chr4 (32-121)||(45787114-45787203)
chr4 (135-175)||(11884649-11884689)
chr4 (163-211)||(24684337-24684385)
chr4 (33-89)||(25056052-25056108)
chr4 (33-206)||(40147120-40147297)
chr4 (63-118)||(9999383-9999438)
chr4 (136-234)||(17231962-17232060)
chr4 (136-206)||(24369269-24369339)
chr4 (80-118)||(25055915-25055953)
chr4 (81-118)||(2788160-2788197)
chr4 (1-118)||(11884742-11884858)
chr4 (57-126)||(40395281-40395350)
chr4 (136-181)||(51950557-51950602)
chr4 (126-202)||(45038252-45038328)
[»] scaffold0157 (2 HSPs)
scaffold0157 (8-214)||(21653-21864)
scaffold0157 (57-206)||(21522-21675)
[»] chr7 (33 HSPs)
chr7 (8-206)||(41666146-41666348)
chr7 (64-228)||(27576520-27576688)
chr7 (39-206)||(42312761-42312932)
chr7 (57-206)||(29710502-29710655)
chr7 (33-229)||(40951611-40951809)
chr7 (88-228)||(29710300-29710444)
chr7 (33-121)||(4048371-4048459)
chr7 (57-229)||(11975622-11975799)
chr7 (46-205)||(11975451-11975613)
chr7 (63-224)||(6694515-6694679)
chr7 (63-174)||(22750350-22750465)
chr7 (44-206)||(6222082-6222246)
chr7 (136-205)||(40951849-40951918)
chr7 (32-121)||(43258335-43258424)
chr7 (63-224)||(27280598-27280763)
chr7 (63-118)||(29019342-29019397)
chr7 (54-205)||(4048205-4048360)
chr7 (63-121)||(40951832-40951890)
chr7 (32-207)||(46713212-46713390)
chr7 (135-228)||(31453046-31453139)
chr7 (81-175)||(42312997-42313095)
chr7 (9-118)||(6694664-6694773)
chr7 (81-228)||(27280815-27280966)
chr7 (33-102)||(3198380-3198449)
chr7 (82-121)||(40081222-40081262)
chr7 (137-211)||(6694736-6694810)
chr7 (80-126)||(30662181-30662227)
chr7 (136-198)||(43258314-43258376)
chr7 (56-118)||(44293866-44293928)
chr7 (81-118)||(4048479-4048516)
chr7 (137-206)||(11975509-11975578)
chr7 (136-209)||(30869605-30869678)
chr7 (136-205)||(44293977-44294046)
[»] scaffold0018 (2 HSPs)
scaffold0018 (63-228)||(161593-161762)
scaffold0018 (1-212)||(161400-161616)
[»] scaffold0279 (1 HSPs)
scaffold0279 (64-228)||(1124-1292)
[»] chr8 (29 HSPs)
chr8 (42-207)||(27052565-27052730)
chr8 (4-175)||(28618766-28618942)
chr8 (34-206)||(24827359-24827535)
chr8 (8-206)||(6220316-6220518)
chr8 (38-211)||(27855554-27855731)
chr8 (8-118)||(27127968-27128079)
chr8 (57-228)||(41151385-41151560)
chr8 (63-229)||(6220162-6220332)
chr8 (80-206)||(27052410-27052540)
chr8 (57-109)||(14550101-14550153)
chr8 (66-175)||(36053038-36053151)
chr8 (33-213)||(9399811-9399994)
chr8 (3-118)||(41151533-41151649)
chr8 (63-205)||(9400014-9400161)
chr8 (54-116)||(14895123-14895185)
chr8 (63-112)||(14895020-14895069)
chr8 (63-118)||(38414957-38415013)
chr8 (37-174)||(14550171-14550314)
chr8 (80-127)||(14550276-14550323)
chr8 (63-118)||(27128063-27128118)
chr8 (136-206)||(15564046-15564116)
chr8 (56-118)||(20209354-20209416)
chr8 (56-118)||(20229062-20229124)
chr8 (136-205)||(20209465-20209534)
chr8 (136-205)||(20229173-20229242)
chr8 (136-205)||(27127938-27128006)
chr8 (137-209)||(6220389-6220461)
chr8 (135-175)||(15563877-15563917)
chr8 (161-205)||(38414656-38414700)
[»] chr3 (54 HSPs)
chr3 (57-213)||(18020004-18020164)
chr3 (8-122)||(14964919-14965032)
chr3 (33-206)||(25848289-25848466)
chr3 (34-234)||(47891085-47891287)
chr3 (33-202)||(43649990-43650163)
chr3 (63-203)||(28813843-28813986)
chr3 (45-207)||(252047-252213)
chr3 (63-224)||(7607674-7607837)
chr3 (57-202)||(25848480-25848629)
chr3 (36-211)||(32186459-32186638)
chr3 (67-206)||(45131441-45131578)
chr3 (57-228)||(47891302-47891477)
chr3 (63-207)||(27768307-27768455)
chr3 (1-126)||(26724096-26724222)
chr3 (14-118)||(14624185-14624290)
chr3 (54-206)||(26724190-26724345)
chr3 (33-171)||(40286275-40286417)
chr3 (54-118)||(32186652-32186716)
chr3 (45-206)||(50332604-50332768)
chr3 (63-206)||(39714547-39714694)
chr3 (1-118)||(40209800-40209918)
chr3 (63-172)||(5442491-5442605)
chr3 (63-116)||(26976412-26976465)
chr3 (63-205)||(46337505-46337651)
chr3 (34-118)||(36667239-36667323)
chr3 (15-118)||(47573835-47573938)
chr3 (63-126)||(13902992-13903055)
chr3 (138-205)||(47573903-47573969)
chr3 (135-209)||(3169712-3169786)
chr3 (70-123)||(26976491-26976544)
chr3 (147-224)||(39541445-39541522)
chr3 (135-224)||(40286511-40286600)
chr3 (63-208)||(36900062-36900211)
chr3 (63-118)||(3169562-3169617)
chr3 (135-228)||(25848622-25848716)
chr3 (1-114)||(47069626-47069740)
chr3 (136-209)||(28813896-28813969)
chr3 (57-126)||(36667164-36667232)
chr3 (44-104)||(18019930-18019990)
chr3 (137-205)||(49364308-49364376)
chr3 (57-120)||(14624139-14624201)
chr3 (57-123)||(43650177-43650244)
chr3 (135-174)||(45131669-45131708)
chr3 (136-211)||(47069734-47069809)
chr3 (63-118)||(50332527-50332582)
chr3 (136-174)||(26976501-26976539)
chr3 (130-204)||(30955005-30955078)
chr3 (130-204)||(30970817-30970890)
chr3 (136-206)||(32186678-32186748)
chr3 (136-206)||(40286300-40286370)
chr3 (136-174)||(50332527-50332565)
chr3 (69-127)||(54343448-54343506)
chr3 (137-174)||(26724104-26724141)
chr3 (63-118)||(39541416-39541472)
[»] chr5 (54 HSPs)
chr5 (57-224)||(16327082-16327253)
chr5 (54-206)||(1996144-1996300)
chr5 (1-211)||(28559232-28559447)
chr5 (63-226)||(12774337-12774506)
chr5 (63-226)||(12713073-12713242)
chr5 (1-206)||(35461562-35461771)
chr5 (1-206)||(16327224-16327432)
chr5 (94-228)||(19550080-19550217)
chr5 (39-206)||(23661881-23662050)
chr5 (63-206)||(23796544-23796689)
chr5 (1-118)||(37642920-37643037)
chr5 (57-205)||(20927848-20928000)
chr5 (64-206)||(38680632-38680773)
chr5 (63-122)||(7209878-7209937)
chr5 (57-173)||(25456310-25456430)
chr5 (8-211)||(25456408-25456614)
chr5 (63-206)||(32361170-32361317)
chr5 (57-224)||(35461420-35461591)
chr5 (11-127)||(33491597-33491714)
chr5 (34-115)||(38682764-38682845)
chr5 (45-174)||(5746129-5746262)
chr5 (35-118)||(35813459-35813542)
chr5 (1-118)||(4942992-4943110)
chr5 (35-121)||(20181432-20181518)
chr5 (125-206)||(40980713-40980794)
chr5 (54-206)||(23662057-23662214)
chr5 (63-118)||(7210253-7210308)
chr5 (63-118)||(35187994-35188049)
chr5 (57-119)||(36760780-36760842)
chr5 (126-176)||(37032953-37033003)
chr5 (63-121)||(37642885-37642943)
chr5 (63-174)||(4943087-4943204)
chr5 (136-205)||(20181404-20181473)
chr5 (156-209)||(28022173-28022226)
chr5 (137-206)||(28559442-28559511)
chr5 (138-206)||(25456337-25456405)
chr5 (136-204)||(38682810-38682878)
chr5 (136-206)||(14604127-14604198)
chr5 (63-203)||(17400550-17400693)
chr5 (45-174)||(17400715-17400850)
chr5 (63-167)||(28559424-28559532)
chr5 (83-126)||(35813566-35813609)
chr5 (63-118)||(36759697-36759752)
chr5 (1-102)||(12712994-12713096)
chr5 (1-102)||(12774258-12774360)
chr5 (80-118)||(19550133-19550171)
chr5 (135-205)||(20928080-20928150)
chr5 (66-120)||(35813380-35813434)
chr5 (136-209)||(5746154-5746227)
chr5 (33-171)||(28022107-28022248)
chr5 (63-127)||(5746295-5746359)
chr5 (80-116)||(10827143-10827179)
chr5 (148-228)||(12712402-12712480)
chr5 (80-153)||(17400812-17400889)
[»] chr6 (22 HSPs)
chr6 (54-224)||(17136828-17137002)
chr6 (57-224)||(21598628-21598799)
chr6 (42-126)||(35050622-35050706)
chr6 (39-233)||(17342605-17342802)
chr6 (34-118)||(364155-364241)
chr6 (1-211)||(21598442-21598657)
chr6 (39-205)||(9982673-9982843)
chr6 (33-213)||(35225393-35225577)
chr6 (1-118)||(2761495-2761613)
chr6 (57-206)||(10356444-10356597)
chr6 (57-121)||(17342531-17342595)
chr6 (80-228)||(10356241-10356393)
chr6 (57-127)||(2761584-2761654)
chr6 (63-228)||(13273048-13273214)
chr6 (57-211)||(24059664-24059820)
chr6 (57-206)||(3895669-3895819)
chr6 (54-122)||(3848578-3848646)
chr6 (54-121)||(35225588-35225655)
chr6 (137-211)||(9982936-9983010)
chr6 (125-174)||(10356355-10356404)
chr6 (45-151)||(13812241-13812351)
chr6 (137-206)||(35050847-35050916)
[»] chr2 (31 HSPs)
chr2 (57-213)||(5009153-5009318)
chr2 (34-212)||(31630063-31630243)
chr2 (33-201)||(4511396-4511567)
chr2 (33-211)||(5009332-5009512)
chr2 (54-209)||(31630255-31630412)
chr2 (15-118)||(36694406-36694511)
chr2 (63-174)||(39442268-39442383)
chr2 (54-122)||(11791778-11791846)
chr2 (76-123)||(6694117-6694164)
chr2 (54-206)||(25895095-25895251)
chr2 (33-118)||(3876821-3876906)
chr2 (50-228)||(9500885-9501067)
chr2 (136-209)||(12612445-12612518)
chr2 (135-223)||(44556510-44556598)
chr2 (142-209)||(3876949-3877016)
chr2 (63-118)||(8035458-8035513)
chr2 (63-118)||(12612480-12612535)
chr2 (63-126)||(30265465-30265528)
chr2 (71-118)||(43699435-43699482)
chr2 (33-127)||(25894990-25895084)
chr2 (60-117)||(4188657-4188714)
chr2 (135-206)||(36217207-36217276)
chr2 (136-228)||(43699444-43699536)
chr2 (135-206)||(1316037-1316108)
chr2 (136-187)||(4511929-4511980)
chr2 (63-118)||(39442420-39442474)
chr2 (80-118)||(36217208-36217246)
chr2 (57-118)||(14166371-14166432)
chr2 (137-206)||(44556587-44556656)
chr2 (57-101)||(4511882-4511926)
chr2 (136-212)||(25894961-25895037)
[»] scaffold0002 (1 HSPs)
scaffold0002 (57-205)||(12230-12377)
[»] chr1 (21 HSPs)
chr1 (33-174)||(52913173-52913319)
chr1 (33-121)||(2633236-2633324)
chr1 (80-205)||(7489902-7490031)
chr1 (33-207)||(18980992-18981169)
chr1 (135-229)||(26879665-26879759)
chr1 (33-118)||(1173105-1173189)
chr1 (57-118)||(18608672-18608733)
chr1 (136-224)||(33650382-33650470)
chr1 (136-206)||(18608640-18608710)
chr1 (45-118)||(33650570-33650644)
chr1 (39-88)||(26879524-26879573)
chr1 (135-206)||(7489961-7490032)
chr1 (63-174)||(38698887-38698998)
chr1 (63-118)||(41007461-41007516)
chr1 (80-126)||(52913057-52913104)
chr1 (44-114)||(36956361-36956431)
chr1 (57-127)||(52913333-52913403)
chr1 (136-205)||(1173075-1173142)
chr1 (136-205)||(2633208-2633277)
chr1 (135-203)||(1173277-1173345)
chr1 (63-145)||(41007055-41007140)
[»] scaffold0578 (1 HSPs)
scaffold0578 (136-213)||(2446-2524)
[»] scaffold0128 (1 HSPs)
scaffold0128 (33-174)||(2550-2694)
[»] scaffold1191 (1 HSPs)
scaffold1191 (148-205)||(1243-1300)


Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 53)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 24684259 - 24683993
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtg 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  24684259 aagtttataaacgttttcgatttagtctttctattacaaaaaagatgatgtggcaaaagaaataaattgaaaacgtttacaaacttaaaagatttatgtg 24684160  T
Q  101 taaccaaaataacttaaatgactaattataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  24684159 taaccaaaataacttaaatgactaattataaatatcaaacttaaaggatttatatgtgacaaaaataacttaaaacatcaatctattataaacctcaaac 24684060  T
Q  201 ttaaagaacccctgttctaatttaaccttaatttattcaagaggttggtcttgccaagtggtgttct 267  Q
    ||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  24684059 ttaaagaacccatgttctaatttaaccttaatttaatcaagaggttggtcttggcaagtggtgttct 24683993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 41083265 - 41083034
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtg 100  Q
    |||||| |||||||||||||||||||  || |||||||||||||||||||||||||||||| ||||||  |||| |||||||||||||| || |||||||    
T  41083265 aagtttgtaaacgttttcgatttagtccttatattacaaaaaagatgatgtggcaaaaggactaaatttgaaacgtttacaaacttaaaggacttatgtg 41083166  T
Q  101 taaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctc 196  Q
    | | |||||||||||||| ||| ||    ||| |||  ||||||||||| ||||||||||||||||||||||||||||  |||||  | ||| |||||||    
T  41083165 tgatcaaaataacttaaaggaccaatatgttacaaacttcaaacttaaaggacttatatgtgacaaaaataacttaaatgatcaatatgttacaaacctc 41083066  T
Q  197 aaacttaaagaacccctgttctaatttaacct 228  Q
    |||||||||| ||||||  | |||||||||||    
T  41083065 aaacttaaaggacccctagtataatttaacct 41083034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 213
Target Start/End: Complemental strand, 40395303 - 40395094
Alignment:
Q  8 taaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaa 107  Q
    |||||||||||||||||||  ||||||||||||||||||||||||| | |||||  |||||||||||  ||||||||||||||||||||||||| |||||    
T  40395303 taaacgttttcgatttagtccttctattacaaaaaagatgatgtggtagaaggacaaaattgaaaacgcttacaaacttaaaagatttatgtgtgaccaa 40395204  T
Q  108 aataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaactta 203  Q
    |||||||||||  |||||    ||| |||  ||||||||||| ||||||||||||||||||||||| ||||  | ||| || | | ||| ||||||||||    
T  40395203 aataacttaaagaactaatatgttacaaacctcaaacttaaaggacttatatgtgacaaaaataacctaaaggaccaatctgtaacaaatctcaaactta 40395104  T
Q  204 aagaacccct 213  Q
    ||| ||||||    
T  40395103 aaggacccct 40395094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 214
Target Start/End: Complemental strand, 12498824 - 12498613
Alignment:
Q  8 taaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaa 107  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||   |||||||||||||| ||||||||||| |||||    
T  12498824 taaacgttttcgatttagtccttctattacaaaaaagatgatgtggcagaaggactaaattgaaattttttacaaacttaaaggatttatgtgtgaccaa 12498725  T
Q  108 aataacttaaatgactaat-tat---aaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaa-catcaaactattataaacctcaaactt 202  Q
    ||||||||||| ||  ||| |||   |||  | ||||||||| ||||||| |||||||||||||||||||||  | ||| |||||| |||||||||| ||    
T  12498724 aataacttaaaagatcaatatattgcaaaccttaaacttaaaagacttatgtgtgacaaaaataacttaaaaggaccaatctattacaaacctcaaattt 12498625  T
Q  203 aaagaacccctg 214  Q
    || | |||||||    
T  12498624 aatggacccctg 12498613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 42 - 206
Target Start/End: Original strand, 45038343 - 45038511
Alignment:
Q  42 aagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatca 137  Q
    |||||||||||||| || || ||||| |||||| |||||||||||||| || |||||||| |||||||||||||||| ||| ||    ||| |||  |||    
T  45038343 aagatgatgtggcagaatgactaaatcgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctca 45038442  T
Q  138 aacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||||| ||||||| ||||||||||||||||||||  | ||| |||||| |||||||||||||||||    
T  45038443 aacttaaaggacttatttgtgacaaaaataacttaaatgaccaatctattacaaacctcaaacttaaag 45038511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 12592348 - 12592524
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgacta----atta 128  Q
    |||||||||| ||||||||| || ||||| ||||| |||||| ||||||||||||||||| |||||| | ||||| |||||||||| ||  |    ||||    
T  12592348 attacaaaaacgatgatgtgacagaaggactaaatcgaaaacttttacaaacttaaaagacttatgtatgaccaatataacttaaaagatcaatctatta 12592447  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
     |||  ||||||||||| |||| ||||||||| ||||||| |||||| |||||  ||||||||||||||||||||||    
T  12592448 caaacttcaaacttaaaggactaatatgtgactaaaataaattaaaaaatcaatttattataaacctcaaacttaaa 12592524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 57 - 224
Target Start/End: Original strand, 41083236 - 41083407
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgactta 152  Q
    ||||| ||||| |||||| |||||||||||||| || |||||||| ||| |||||||||||| ||| |||    ||  ||  ||||||||||||||| ||    
T  41083236 aaggactaaatcgaaaacgtttacaaacttaaaggacttatgtgtgaccgaaataacttaaaagaccaatctgttacgaacctcaaacttaaatgacata 41083335  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    |||||||| |||||||||||||  | ||| || ||| ||||||||||||||||| |||||| || |||||||    
T  41083336 tatgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacccctattgtaattta 41083407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 81 - 212
Target Start/End: Complemental strand, 7246123 - 7245988
Alignment:
Q  81 aaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt----ataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaac 176  Q
    ||||||||| || ||||||||||||||||||||||||| ||| ||||    | |||||||||||||||| ||||||| | |||| |||||||||||||      
T  7246123 aaacttaaaggacttatgtgtaaccaaaataacttaaacgaccaatttgttacaaatatcaaacttaaaggacttatgtctgaccaaaataacttaaagg 7246024  T
Q  177 atcaaactattataaacctcaaacttaaagaacccc 212  Q
    ||||| || ||| |||| |||||||||||| |||||    
T  7246023 atcaacctgttacaaacgtcaaacttaaaggacccc 7245988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 12498802 - 12498955
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgactta 152  Q
    ||||| ||||| |||||| |||||||| |||||||| |||||||| ||| |||||| ||||| || || |    || |||| ||||||||||| ||||||    
T  12498802 aaggactaaatcgaaaacgtttacaaatttaaaagacttatgtgtgaccgaaataatttaaaggattagtctgttacaaatctcaaacttaaaggactta 12498901  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    | |||||  |||||||||||||  ||||| |||||| |||||||||||||||||    
T  12498902 tgtgtgattaaaataacttaaatgatcaatctattacaaacctcaaacttaaag 12498955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 212
Target Start/End: Original strand, 26782498 - 26782574
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccc 212  Q
    |||||||||| ||||||||||||||||||||||||||||| |||||  ||||| ||||||||||||||||| |||||    
T  26782498 caaacttaaaagacttatatgtgacaaaaataacttaaaaaatcaatatattacaaacctcaaacttaaaggacccc 26782574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 9999478 - 9999645
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||| |||||||| ||||| || |||| ||| || ||||||||||||||||| |||    || |||  |||||||||||  ||| || ||||    
T  9999478 taaattgaaaacttttacaaagttaaatgacttatatgtgacaaaaataacttaaatgaccaatctgttacaaacctcaaacttaaa--actaatgtgtg 9999575  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    || |||||||||||||  | ||| |||||| |||| || |||||||||||||| || |||||||||||||    
T  9999576 accaaaataacttaaatgaccaatctattacaaacttctaacttaaagaacccttgatctaatttaacct 9999645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 12592328 - 12592270
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    |||||||||||| |||||||||||| ||||||||||||| |||||||||||||||||||    
T  12592328 taaattgaaaacgtttacaaacttacaagatttatgtgtgaccaaaataacttaaatga 12592270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 78 - 224
Target Start/End: Original strand, 2470111 - 2470261
Alignment:
Q  78 tacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgacaaaaataacttaa 173  Q
    |||| ||| |||||| |||||||| |||||||||||||||| ||| |||    || |||  ||||| ||||| |||||||||||||| ||||||||||||    
T  2470111 tacatactaaaaagacttatgtgtgaccaaaataacttaaaggaccaatatattacaaacctcaaatttaaaggacttatatgtgaccaaaataacttaa 2470210  T
Q  174 aacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    |  | ||| |||||| |||||| ||||| |||| ||||||| | |||||||    
T  2470211 aggaccaatctattacaaaccttaaactgaaaggacccctggtgtaattta 2470261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 84 - 206
Target Start/End: Original strand, 21321979 - 21322105
Alignment:
Q  84 cttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatc 179  Q
    ||||||||||||| ||||||||||||||| ||||| ||| |||    || |||  ||||||||||| |||||||||||||| |||||||||||||| |      
T  21321979 cttaaaagatttacgtgtaaccaaaataagttaaaggaccaatcttttacaaacctcaaacttaaaggacttatatgtgaccaaaataacttaaaagaaa 21322078  T
Q  180 aaactattataaacctcaaacttaaag 206  Q
    ||  | ||| |||||||||||||||||    
T  21322079 aatgtgttacaaacctcaaacttaaag 21322105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 51950625 - 51950564
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  51950625 aaggactaaattgaaaacatttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 51950564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 47 - 228
Target Start/End: Original strand, 53863490 - 53863676
Alignment:
Q  47 gatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaactt 142  Q
    ||||||||| ||||| |||||||||||| |||||||||||||| || |||||  | |||||||||||||||| ||| ||    ||| ||   ||||||||    
T  53863490 gatgtggcagaaggactaaattgaaaacttttacaaacttaaaggacttatgcatgaccaaaataacttaaaggaccaatttgttacaaccctcaaactt 53863589  T
Q  143 -aaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
     ||| ||||||| |||||| |||||||||||||  | ||| |||||| |||| | |||||||||| || | || | |||||||||||    
T  53863590 aaaaggacttatgtgtgactaaaataacttaaacgaccaatctattacaaacttgaaacttaaaggactcatgatgtaatttaacct 53863676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 24369223 - 24369307
Alignment:
Q  34 ttacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||| | ||||||||||||||| || ||||| ||||||||||||||||||||| || ||| |||| || |||||||||||||    
T  24369223 ttacaaacatgatgatgtggcaaaaagactaaatcgaaaacatttacaaacttaaaggacttaggtgtgactaaaataacttaaa 24369307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 51950640 - 51950724
Alignment:
Q  34 ttacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||| ||||||||| ||||| || |||||||||||  |||||||||||||| || |||||| |||||||| |||||||||    
T  51950640 ttacaaaaatgatgatgtgacaaaatgactaaattgaaaatgtttacaaacttaaaggacttatgtataaccaaattaacttaaa 51950724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 41519310 - 41519493
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----tta 128  Q
    |||||||||| ||| | ||| |||||||| |||||  ||||  ||||||||||||||||| |||||||| || ||||| ||||||||||||||    |||    
T  41519310 attacaaaaacgattaagtgtcaaaaggattaaatcaaaaatgtttacaaacttaaaagacttatgtgtgactaaaatgacttaaatgactaatctgtta 41519409  T
Q  129 taaatatcaaacttaaatgacttatatg-tgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
     |||  |||| ||||||| | || | || ||||||||||||||||||| |  ||  | ||| ||||||||||||||||| ||||    
T  41519410 aaaacctcaatcttaaataatttttgtgttgacaaaaataacttaaaagactaatttgttagaaacctcaaacttaaaggaccc 41519493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 53863466 - 53863351
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||| | |||||||||||||| || |||||||| || ||||||||||||| ||| ||    ||| |||| || |||||||||||||||| ||||    
T  53863466 taaattgaaatcttttacaaacttaaaggacttatgtgtgactaaaataacttaaaggaccaatctgttacaaatctcgaacttaaatgacttatgtgtg 53863367  T
Q  159 acaaaaataacttaaa 174  Q
    |  |||||||||||||    
T  53863366 atcaaaataacttaaa 53863351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 2788032 - 2787979
Alignment:
Q  65 aattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||||||||||||||||| || |||||||| ||||||||||||||||    
T  2788032 aattgaaaacatttacaaacttaaatgacttatgtgtgaccaaaataacttaaa 2787979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 45787222 - 45787365
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt--ataaatatcaaacttaaatgacttatatgtgac 160  Q
    |||||||||||| ||| ||||||||||| | |||||||| | ||||||||||||||  |||||||   || | | | |||||||| ||  ||| ||||||    
T  45787222 taaattgaaaacgtttgcaaacttaaaaaacttatgtgtgatcaaaataacttaaaaaactaatttattacaaacctaacttaaa-gaactatgtgtgac 45787320  T
Q  161 aaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
     |||||||||||||| |||||  ||||| ||||||||||||||||    
T  45787321 caaaataacttaaaaaatcaatttattacaaacctcaaacttaaa 45787365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 123
Target Start/End: Complemental strand, 17232077 - 17232017
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgact 123  Q
    |||||||||||| ||||||||||||||||| |||||||| | |||||||||||||| ||||    
T  17232077 taaattgaaaacgtttacaaacttaaaagacttatgtgtgatcaaaataacttaaaagact 17232017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 45038249 - 45038186
Alignment:
Q  148 acttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
    ||||||| ||||| |||||||||||||| |||||  ||||| ||||||||||||||||||||||    
T  45038249 acttatacgtgaccaaaataacttaaaagatcaatatattacaaacctcaaacttaaagaaccc 45038186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 118
Target Start/End: Complemental strand, 50290302 - 50290215
Alignment:
Q  32 tattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaag-atttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||| ||||||||| || || || |||||  |||| ||||| ||||||||||| |||||||||| ||||||||||||||||    
T  50290302 tattacaaaaatgatgatgtgacagaatgactaaatcaaaaatatttaaaaacttaaaagtatttatgtgtgaccaaaataacttaaa 50290215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 7246188 - 7246359
Alignment:
Q  39 aaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat-tat---aaata 134  Q
    |||| |||||||| | | ||||| |||||||||||| ||||||||||||||  | |||||||| |  |||||||  ||||  || ||| |||   ||||     
T  7246188 aaaatgatgatgtcgtataaggactaaattgaaaacttttacaaacttaaagtacttatgtgtgataaaaataaactaaagaaccaatctattccaaatc 7246287  T
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||||| ||||||| | |||| |||||||||||||| | |||  | ||| |||||||||||||||||    
T  7246288 tcaaacttaaaggacttatgtatgaccaaaataacttaaaagaccaatatgttacaaacctcaaacttaaag 7246359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 26782475 - 26782536
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||| |||||||||||| ||||||||||||||||| |||| ||| || |||||||||||||    
T  26782475 aaggactaaattgaaaacttttacaaacttaaaagacttatatgtgacaaaaataacttaaa 26782536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 55617531 - 55617707
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgac 149  Q
    |||||||| |||||||||||||||||||||||| ||| | |||||||| || ||||||||||||| ||| ||    ||  |||  ||||||||||| | |    
T  55617531 caaaaggactaaattgaaaacatttacaaactt-aaacacttatgtgtgactaaaataacttaaaagacaaatatgttgcaaacctcaaacttaaa-ggc 55617628  T
Q  150 ttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    |||  ||| || |||||||||||||  |  || |||||| |||||||||| |||||| | ||||| | |||||||||||    
T  55617629 ttacgtgttaccaaaataacttaaagaactaatctattacaaacctcaaatttaaaggatccctgatgtaatttaacct 55617707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 55624835 - 55625011
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgac 149  Q
    |||||||| |||||||||||||||||||||||| ||| | |||||||| || ||||||||||||| ||| ||    ||  |||  ||||||||||| | |    
T  55624835 caaaaggactaaattgaaaacatttacaaactt-aaacacttatgtgtgactaaaataacttaaaagacaaatatgttgcaaacctcaaacttaaa-ggc 55624932  T
Q  150 ttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    |||  ||| || |||||||||||||  |  || |||||| |||||||||| |||||| | ||||| | |||||||||||    
T  55624933 ttacgtgttaccaaaataacttaaagaactaatctattacaaacctcaaatttaaaggatccctgatgtaatttaacct 55625011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 40147106 - 40146955
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaa--atgact-aattataaatatcaaacttaaatgacttat 153  Q
    |||||||||| ||||||||||||||| |||||| || | |||||| ||||||||||| |||  || | |  |||| |||  |||||||| || |||||||    
T  40147106 aaggaataaactgaaaacatttacaaccttaaaggactcatgtgtgaccaaaataacctaaggatcaatctattacaaacctcaaacttcaaggacttat 40147007  T
Q  154 atgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
     |||||| |||||||||||||  |  || |||| | ||||||||||||||||    
T  40147006 gtgtgaccaaaataacttaaatgacaaatctatcacaaacctcaaacttaaa 40146955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 2469972 - 2469901
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||||| ||||||  |||||| |||||||||||||  | ||| |||||| |||||||||||||||||    
T  2469972 tcaaacttaaaggacttaggtgtgaccaaaataacttaaagaaccaatctattacaaacctcaaacttaaag 2469901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 208
Target Start/End: Original strand, 2788160 - 2788231
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaa 208  Q
    ||||||||| || |||| |||||| |||||||||||||| |||||  | ||| |||||||||||||||||||    
T  2788160 aaacttaaaggatttatgtgtgaccaaaataacttaaaatatcaatttgttacaaacctcaaacttaaagaa 2788231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 145
Target Start/End: Complemental strand, 26782447 - 26782356
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaa 145  Q
    ||||| |||||||||||  ||||||||||||||||| ||| |||| |||||||||||||||| ||| ||    ||| ||||||||||||||||    
T  26782447 aaggactaaattgaaaatttttacaaacttaaaagactta-gtgtgaccaaaataacttaaaggaccaatctgttacaaatatcaaacttaaa 26782356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 44057260 - 44057367
Alignment:
Q  71 aaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt----ataaatatcaaacttaaatgacttatatgtgacaaaaat 166  Q
    |||| ||||||| |||||| || |||||| | || ||||||||||||||||| ||||    | |||| ||||||||||||||||||| ||| || |||||    
T  44057260 aaacgtttacaagcttaaa-gacttatgtatgactaaaataacttaaatgaccaatttattacaaatctcaaacttaaatgacttatgtgtaaccaaaat 44057358  T
Q  167 aacttaaaa 175  Q
    |||||||||    
T  44057359 aacttaaaa 44057367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 205
Target Start/End: Original strand, 50290332 - 50290472
Alignment:
Q  67 ttgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaattat---aaatatcaaacttaaatgacttatatgtgacaaa 163  Q
    |||||||| ||||||||||||||| | | ||| || |||||||||| || || ||| ||| ||   |||  |||||||||||  |||||| |||||| ||    
T  50290332 ttgaaaacgtttacaaacttaaaa-actcatgcgtgaccaaaataatttgaaggaccaatcatcacaaacctcaaacttaaaaaacttatgtgtgaccaa 50290430  T
Q  164 aataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    |||||||||||  |||||  ||||| ||||||||||||||||    
T  50290431 aataacttaaatgatcaatttattacaaacctcaaacttaaa 50290472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 12592395 - 12592465
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||||||| ||||||| | |||| || ||||||||||| ||||| |||||| |||| ||||||||||||    
T  12592395 caaacttaaaagacttatgtatgaccaatataacttaaaagatcaatctattacaaacttcaaacttaaag 12592465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 177
Target Start/End: Complemental strand, 2788017 - 2787976
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaaca 177  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  2788017 caaacttaaatgacttatgtgtgaccaaaataacttaaaaca 2787976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 24684254 - 24684324
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    ||||||||| ||||||| ||||||  ||||||||||||||  ||| || ||| ||||||||||||||||||||    
T  24684254 aaacttaaaggacttatgtgtgactgaaataacttaaaac--caatctgttacaaacctcaaacttaaagaac 24684324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 40147167 - 40147240
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    |||| ||||| ||||||||||||| ||||||||||||||   ||||  | ||| ||||||||||||||||||||    
T  40147167 caaatttaaaggacttatatgtgagaaaaataacttaaagggtcaatttgttacaaacctcaaacttaaagaac 40147240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 45787203 - 45787114
Alignment:
Q  32 tattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    |||||||||||  |||||||| || ||| | ||||| |||||  |||| ||||||||| |  ||||||||||||||||||| ||||||||    
T  45787203 tattacaaaaacaatgatgtgacagaagaactaaatcgaaaatgtttataaacttaaatgtcttatgtgtaaccaaaataagttaaatga 45787114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 11884689 - 11884649
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaa 175  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  11884689 tcaaacttaaaggacttatgtgtgacaaaaataacttaaaa 11884649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 211
Target Start/End: Original strand, 24684337 - 24684385
Alignment:
Q  163 aaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
    ||||||||||||| | ||| |||||||||||||||||||||||| ||||    
T  24684337 aaataacttaaaagaccaatctattataaacctcaaacttaaaggaccc 24684385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 89
Target Start/End: Original strand, 25056052 - 25056108
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaa 89  Q
    ||||||||||  ||| ||||||| ||||| |||||||||||| ||||||||||||||    
T  25056052 attacaaaaactatgttgtggcagaaggactaaattgaaaacgtttacaaacttaaa 25056108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 206
Target Start/End: Original strand, 40147120 - 40147297
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatg----actaatta 128  Q
    |||||||||| ||||||||| || ||||| ||||| |||||  |||||||| ||||| || |||| ||| |  ||||||||||||| |    | |  |||    
T  40147120 attacaaaaacgatgatgtgacagaaggactaaatcgaaaatgtttacaaatttaaaggacttatatgtgagaaaaataacttaaagggtcaatttgtta 40147219  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
     |||  |||||||||||  |||||| |||||| ||||  |||||||  | |||  |||||||||||||||||||||||    
T  40147220 caaacctcaaacttaaagaacttatgtgtgaccaaaacgacttaaatgaccaatttattataaacctcaaacttaaag 40147297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 9999438 - 9999383
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||| ||||| ||||||||||||||  |||||||||| ||||| ||||||||||    
T  9999438 taaattcaaaacgtttacaaacttaaagaatttatgtgtgaccaatataacttaaa 9999383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 234
Target Start/End: Complemental strand, 17232060 - 17231962
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaaccttaattt 234  Q
    |||||||||| ||||||| |||||  |||||||||||||| |   | || ||| ||||||||||||||||||||  ||| | ||||||| |||| ||||    
T  17232060 caaacttaaaagacttatgtgtgatcaaaataacttaaaagacttatctgttacaaacctcaaacttaaagaactgctgatgtaatttagcctttattt 17231962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 24369269 - 24369339
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||||||| ||||||  |||||| |||||||||||||  |  || |||||| |||||||||||||||||    
T  24369269 caaacttaaaggacttaggtgtgactaaaataacttaaaggacaaatctattacaaacctcaaacttaaag 24369339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 25055953 - 25055915
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||| ||||||||||| ||||||||||||||||    
T  25055953 caaacttaaaggatttatgtgtcaccaaaataacttaaa 25055915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 2788160 - 2788197
Alignment:
Q  81 aaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||| ||||||||||| ||||||||||||||||    
T  2788160 aaacttaaaggatttatgtgtgaccaaaataacttaaa 2788197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 11884742 - 11884858
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtg 100  Q
    |||||| ||||| |||||||||||||  ||||||||   ||| |||||| ||| | ||||| ||||| | |||||||||||||||||||  | |||| ||    
T  11884742 aagtttgtaaacattttcgatttagtccttctattaaccaaacgatgatatggtagaaggactaaatcg-aaacatttacaaacttaaagaacttatttg 11884840  T
Q  101 taaccaaaataacttaaa 118  Q
    | |||||| ||| |||||    
T  11884841 tgaccaaattaatttaaa 11884858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 40395281 - 40395350
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat 126  Q
    ||||| ||||| |||||| |||||||| ||||| || |||||||| ||  |||||||||||| |||||||    
T  40395281 aaggactaaatcgaaaacgtttacaaatttaaaggacttatgtgtgacagaaataacttaaaggactaat 40395350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 181
Target Start/End: Complemental strand, 51950602 - 51950557
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaa 181  Q
    |||||||||| ||||||| |||||| |||||||||||||| |||||    
T  51950602 caaacttaaaggacttatgtgtgaccaaaataacttaaaagatcaa 51950557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 202
Target Start/End: Complemental strand, 45038328 - 45038252
Alignment:
Q  126 ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaactt 202  Q
    |||||||| ||||||||||| ||||||| ||||||  |||||||||||   | ||| || |||||||||| ||||||    
T  45038328 ttataaatctcaaacttaaaggacttatgtgtgaccgaaataacttaacggaccaatctgttataaaccttaaactt 45038252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 8 - 214
Target Start/End: Original strand, 21653 - 21864
Alignment:
Q  8 taaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaa 107  Q
    |||||||||||||||||||  ||||||||||||||||||||||||||| ||||| ||||||||||   |||||||||||||| ||||||||||| |||||    
T  21653 taaacgttttcgatttagtccttctattacaaaaaagatgatgtggcagaaggactaaattgaaattttttacaaacttaaaggatttatgtgtgaccaa 21752  T
Q  108 aataacttaaatgactaat-tat---aaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaa-catcaaactattataaacctcaaactt 202  Q
    ||||||||||| ||  ||| |||   |||  | ||||||||| ||||||| |||||||||||||||||||||  | ||| |||||| |||||||||| ||    
T  21753 aataacttaaaagatcaatatattgcaaaccttaaacttaaaagacttatgtgtgacaaaaataacttaaaaggaccaatctattacaaacctcaaattt 21852  T
Q  203 aaagaacccctg 214  Q
    || | |||||||    
T  21853 aatggacccctg 21864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 206
Target Start/End: Complemental strand, 21675 - 21522
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgactta 152  Q
    ||||| ||||| |||||| |||||||| |||||||| |||||||| ||| |||||| ||||| || || |    || |||| ||||||||||| ||||||    
T  21675 aaggactaaatcgaaaacgtttacaaatttaaaagacttatgtgtgaccgaaataatttaaaggattagtctgttacaaatctcaaacttaaaggactta 21576  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    | |||||  |||||||||||||  ||||| |||||| |||||||||||||||||    
T  21575 tgtgtgattaaaataacttaaatgatcaatctattacaaacctcaaacttaaag 21522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 2e-36; HSPs: 33)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 206
Target Start/End: Complemental strand, 41666348 - 41666146
Alignment:
Q  8 taaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaa 107  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||||||||| ||||| | |||| ||||||||||||||  | ||||||||||||||    
T  41666348 taaacattttcgatttagtccttctattacaaaaaagatgatgtggcaaaaggattaaatcgtaaacgtttacaaacttaaactacttatgtgtaaccaa 41666249  T
Q  108 aataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaactta 203  Q
    |||| || |||  |  ||    ||| |||  ||||||||||| ||||||||| | ||||||||||||||||  |||||  | ||||||||||||||||||    
T  41666248 aatagctaaaaaaatcaatatgttacaaacctcaaacttaaaggacttatatataacaaaaataacttaaatgatcaatttgttataaacctcaaactta 41666149  T
Q  204 aag 206  Q
    |||    
T  41666148 aag 41666146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 27576520 - 27576688
Alignment:
Q  64 aaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtga 159  Q
    ||||||||||| |||||||||||||| || |||||||| ||||||||||| |||| ||| |||    || |||||||||||||||||||||||| |||||    
T  27576520 aaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataacctaaaggaccaatcagttacaaatatcaaacttaaatgacttatgtgtga 27576619  T
Q  160 caaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    | |||||||||||||  | ||| || ||| |||| |||||||||||| || || | |||||||||||||    
T  27576620 ccaaaataacttaaaggaccaatctgttacaaacgtcaaacttaaaggactccaggtctaatttaacct 27576688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 42312932 - 42312761
Alignment:
Q  39 aaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaata 134  Q
    |||| |||||||| | | ||||| |||||||||||| |||||||| ||||| || |||||||| || |||||||  |||||||| |||    || ||||     
T  42312932 aaaatgatgatgtcgtataaggactaaattgaaaacttttacaaatttaaaggacttatgtgtgacaaaaataaactaaatgaccaatctattacaaatc 42312833  T
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||||| ||||||| |||||| |||||||||||||  | |||  ||||| |||||||||||||||||    
T  42312832 tcaaacttaaaggacttatgtgtgaccaaaataacttaaatgaccaatatattacaaacctcaaacttaaag 42312761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 29710502 - 29710655
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| |||||||||||  |||||||||||||| || |||||||| || ||||||||||||| ||| ||    ||| |||| ||||||||||||||||||    
T  29710502 aaggactaaattgaaaagttttacaaacttaaatgacttatgtgtgacgaaaataacttaaaggaccaatccgttacaaatctcaaacttaaatgactta 29710601  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    | ||| || |||||||| ||||| | ||| || ||| |||| ||||||||||||    
T  29710602 tgtgttaccaaaataacctaaaagaccaatctgttacaaacgtcaaacttaaag 29710655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 40951809 - 40951611
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgacta-attataa 131  Q
    |||||||||| ||||||||| || ||||| ||||| |||| | |||||||||||||| || |||||||  |||||||||||||||||||| |  |  ||     
T  40951809 attacaaaaacgatgatgtgacagaaggactaaatcgaaagcgtttacaaacttaaatgacttatgtgcgaccaaaataacttaaatgacaatctggtac 40951710  T
Q  132 ata--tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacctt 229  Q
    |||  |||||||||||  |||||| |||||  |||||||||||||  ||||| ||| || ||| |||||||||||||||||| || | ||||||| ||||    
T  40951709 atacctcaaacttaaa-aacttatttgtgagcaaaataacttaaatgatcaatctactacaaatctcaaacttaaagaacccttgatgtaatttagcctt 40951611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 88 - 228
Target Start/End: Complemental strand, 29710444 - 29710300
Alignment:
Q  88 aaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaac 183  Q
    ||||| ||| |||| |||||||||||||||| ||| |||    || |||||||||||||||| |||||||||||||| |||||||||||||  || || |    
T  29710444 aaagacttaagtgtgaccaaaataacttaaaggaccaatatgttacaaatatcaaacttaaaggacttatatgtgaccaaaataacttaaaggattaatc 29710345  T
Q  184 tattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    | ||| |||| |||||||||||| ||||| | | |||||||||||    
T  29710344 tgttacaaacgtcaaacttaaaggaccccagatgtaatttaacct 29710300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Original strand, 4048371 - 4048459
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    |||||||||| |||||||||| | || || ||||| |||||  |||||||||||||| || ||||||||||||||||||||||||||||    
T  4048371 attacaaaaatgatgatgtggtagaaagactaaatcgaaaatgtttacaaacttaaaggacttatgtgtaaccaaaataacttaaatga 4048459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 57 - 229
Target Start/End: Original strand, 11975622 - 11975799
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaa-gatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactt 151  Q
    ||||| ||||||||||| |||||||||||||||| || |||||||| || ||||||||||||| ||| ||    ||| |||  ||||||||||| |||||    
T  11975622 aaggactaaattgaaaatatttacaaacttaaaaggacttatgtgtgacaaaaataacttaaaggaccaatcagttacaaacctcaaacttaaaggactt 11975721  T
Q  152 atatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacctt 229  Q
    || ||| ||||||||||||||||  | ||| || ||  ||| ||||||||||||| |||| |  | ||||||||||||    
T  11975722 atctgttacaaaaataacttaaaggaccaatctgtttcaaatctcaaacttaaaggacccttaatataatttaacctt 11975799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 205
Target Start/End: Complemental strand, 11975613 - 11975451
Alignment:
Q  46 tgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaact 141  Q
    ||||||| || ||||| |||||||||||| |||| ||||||||| || |||||||| |||| ||||||||||| ||  ||    ||| |||  |||||||    
T  11975613 tgatgtgacagaaggactaaattgaaaacgtttaaaaacttaaaggacttatgtgtgaccacaataacttaaaggatcaatatgttacaaacctcaaact 11975514  T
Q  142 taaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    |||| ||||||| |||| |||||||||||||||| |  ||  ||||| ||||||||||||||||    
T  11975513 taaaggacttatgtgtgtcaaaaataacttaaaa-actaatttattacaaacctcaaacttaaa 11975451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 6694679 - 6694515
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||| ||| |||||||||| || ||||||||||| ||||||||||||| ||  |||    || |||   |||||||||| ||||||| || |    
T  6694679 taaattgaaaacgtttgcaaacttaaaggacttatgtgtaac-aaaataacttaaaggatcaatctattacaaaccacaaacttaaaggacttatgtggg 6694581  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    |  |||||||||||||| | |||  ||||| |||||||||||||||||||| |||| | |||||||    
T  6694580 aacaaaataacttaaaagaccaatttattacaaacctcaaacttaaagaacgcctgatgtaattta 6694515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 22750465 - 22750350
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgacta----attataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||| || ||||||||||||||||||||| | || ||||||| ||||||||  |    |||| |||  ||||| ||||||||||||| ||||    
T  22750465 taaattgaaaacgttcacaaacttaaaagatttatgtatgacaaaaataatttaaatgatcaatatattacaaacctcaaaattaaatgacttatgtgtg 22750366  T
Q  159 acaaaaataacttaaa 174  Q
    || |||||||||||||    
T  22750365 accaaaataacttaaa 22750350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 206
Target Start/End: Complemental strand, 6222246 - 6222082
Alignment:
Q  44 gatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaa 139  Q
    |||||||||||| ||||| |||||||||||| || || || |||   | || |||||| ||||||||||||||||| ||||||    || |||| | |||    
T  6222246 gatgatgtggcagaaggactaaattgaaaacgttaacgaaattactggctt-atgtgtgaccaaaataacttaaataactaatctgttacaaattttaaa 6222148  T
Q  140 cttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||| ||||||| |||||| |||||||||||||| | |||  ||||| |||||| ||||||||||    
T  6222147 cttaaa-gacttatgtgtgactaaaataacttaaaagaccaatatattacaaaccttaaacttaaag 6222082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 40951849 - 40951918
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||||| |||| |||||| |||||||||||||  ||||| |||||| ||||||||||||||||    
T  40951849 caaacttaaatgatttatgtgtgaccaaaataacttaaatgatcaatctattacaaacctcaaacttaaa 40951918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 32 - 121
Target Start/End: Complemental strand, 43258424 - 43258335
Alignment:
Q  32 tattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    ||||||||||| |||||||| ||| || || ||||| |||||  ||||||||||||||| | |||||||| || ||||||||||||||||    
T  43258424 tattacaaaaacgatgatgtcgcagaaagactaaatcgaaaatgtttacaaacttaaaacacttatgtgtgacaaaaataacttaaatga 43258335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 27280763 - 27280598
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtg 158  Q
    ||||| |||||| |||||||||||||| || ||| |||| ||||||||||||||| ||| |||    |||  ||  ||||||||||||||||||| ||||    
T  27280763 taaatcgaaaacgtttacaaacttaaaggacttacgtgttaccaaaataacttaagtgattaatctcttacgaacctcaaacttaaatgacttatgtgtg 27280664  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
     | |||||||||||||  | |||  | | | |||| |||||||||||| ||||||| | |||||||    
T  27280663 gctaaaataacttaaaggaccaatttgtaacaaacttcaaacttaaaggacccctggtgtaattta 27280598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 29019397 - 29019342
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||||| |||||||||||||| || |||||||| ||||||||||||||||    
T  29019397 taaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaa 29019342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 205
Target Start/End: Complemental strand, 4048360 - 4048205
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgac 149  Q
    ||||| || |||||||||||| ||||||||||| || ||||||| ||| ||||  |||||||||| ||| ||    ||| |||  ||| |||||||  ||    
T  4048360 caaaatgactaaattgaaaacgtttacaaacttcaaggatttatatgtgaccattataacttaaaggaccaatatgttacaaacctcagacttaaagaac 4048261  T
Q  150 ttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    |||| |||||| |||||||||||||  || |  |||||| ||||||||||||||||    
T  4048260 ttatgtgtgaccaaaataacttaaagaattagtctattacaaacctcaaacttaaa 4048205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 40951832 - 40951890
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    ||||| |||||  |||||||||||||| ||||||||||| |||||||||||||||||||    
T  40951832 taaatagaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataacttaaatga 40951890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 46713390 - 46713212
Alignment:
Q  32 tattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt---- 127  Q
    ||||||||||| |||||| ||| | || ||||||||  ||||| ||| |||| ||||| || |||||||| |  ||||||| ||||||||||||||        
T  46713390 tattacaaaaacgatgatatggtagaaagaataaataaaaaacgtttgcaaatttaaaggacttatgtgttattaaaataatttaaatgactaatttatt 46713291  T
Q  128 ataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaaga 207  Q
    | |||  ||||||||||| ||||||| | |||| |||||||||||||  |  || |||||| |||||||||| |||||||    
T  46713290 acaaacttcaaacttaaa-gacttatgtatgaccaaaataacttaaataactaatctattacaaacctcaaatttaaaga 46713212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 31453046 - 31453139
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    ||||||||||| ||||||| ||||||||||||||||||||  |  || || ||| ||||||||||||||||| ||| | | | |||||||||||    
T  31453046 tcaaacttaaaggacttatgtgtgacaaaaataacttaaataactaatctgttacaaacctcaaacttaaaggacctccgatataatttaacct 31453139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 175
Target Start/End: Original strand, 42312997 - 42313095
Alignment:
Q  81 aaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt----ataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaa 175  Q
    ||||| |||||| |||||||| |||||||||| ||||| ||| ||||    | |||||||||| ||||| ||||||| |||||| ||||||||||||||    
T  42312997 aaactaaaaagacttatgtgtgaccaaaataatttaaaggaccaatttgttacaaatatcaaatttaaaggacttatgtgtgaccaaaataacttaaaa 42313095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 118
Target Start/End: Original strand, 6694664 - 6694773
Alignment:
Q  9 aaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaa 107  Q
    |||||||||| ||||||| ||| | ||| | ||| | ||||| ||||| ||||| ||||| |||||| |||| ||||||||| || |||||||| |||||    
T  6694664 aaacgttttcaatttagtctttatgttaaccaaacatatgatatggcagaagga-taaatcgaaaacgtttataaacttaaaggacttatgtgtgaccaa 6694762  T
Q  108 aataacttaaa 118  Q
    |||||||||||    
T  6694763 aataacttaaa 6694773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 228
Target Start/End: Original strand, 27280815 - 27280966
Alignment:
Q  81 aaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt----ataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaac 176  Q
    |||||| || || |||||||| |||||||||||||||| ||  ||||    || ||  |||||||||||  |||||| |||||| |||||||||||||      
T  27280815 aaacttcaaggacttatgtgttaccaaaataacttaaaggatcaatttgttatgaacctcaaacttaaagtacttatgtgtgaccaaaataacttaaagg 27280914  T
Q  177 atcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
     |||| || ||| ||||||||||||||||| ||| ||  | |||||||||||    
T  27280915 gtcaagctgttacaaacctcaaacttaaaggacctctagtgtaatttaacct 27280966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 102
Target Start/End: Original strand, 3198380 - 3198449
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgta 102  Q
    |||||||||| |||||| ||||| || || |||||||||||| ||||||||| |||| || |||||||||    
T  3198380 attacaaaaacgatgatctggcagaaagactaaattgaaaacgtttacaaacataaatgacttatgtgta 3198449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 121
Target Start/End: Complemental strand, 40081262 - 40081222
Alignment:
Q  82 aacttaaaaga-tttatgtgtaaccaaaataacttaaatga 121  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  40081262 aacttaaaagaatttatgtgtaaccaaaataacttaaatga 40081222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 6694736 - 6694810
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
    ||||||||| ||||||| |||||| |||||||||||||  | |||  | ||| ||||||||||||||||| ||||    
T  6694736 aaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaacctcaaacttaaaggaccc 6694810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 30662227 - 30662181
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat 126  Q
    |||||||||| || |||||||||| |||||||||||||| |||||||    
T  30662227 caaacttaaaggacttatgtgtaatcaaaataacttaaaagactaat 30662181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 198
Target Start/End: Complemental strand, 43258376 - 43258314
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaa 198  Q
    ||||||||||  |||||| ||||||||||||||||||||  ||||| |||||| |||| ||||    
T  43258376 caaacttaaaacacttatgtgtgacaaaaataacttaaatgatcaatctattacaaacttcaa 43258314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 44293928 - 44293866
Alignment:
Q  56 aaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||| ||||| |||||  ||||||||||||||  |||||| ||| ||||||||||||||||    
T  44293928 aaaggactaaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 44293866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 118
Target Start/End: Original strand, 4048479 - 4048516
Alignment:
Q  81 aaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  4048479 aaacctaaaagatttatgtgtcaccaaaataacttaaa 4048516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 11975578 - 11975509
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||| ||||||| |||||| | |||||||||||  |||||  | ||| |||||||||||||||||    
T  11975578 aaacttaaaggacttatgtgtgaccacaataacttaaaggatcaatatgttacaaacctcaaacttaaag 11975509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 209
Target Start/End: Original strand, 30869605 - 30869678
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    |||||||||| ||||||   |||| ||||||||||||||  | ||| || ||| ||||||||||||||||||||    
T  30869605 caaacttaaaggacttacgcgtgataaaaataacttaaaggaccaatctgttacaaacctcaaacttaaagaac 30869678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 44293977 - 44294046
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||  |||||| |||||| |||||||||||||  ||||| || ||| ||||||||||| ||||    
T  44293977 caaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaa 44294046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 69; Significance: 5e-31; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 63 - 228
Target Start/End: Original strand, 161593 - 161762
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||| |||||||||||||| || |||||||| ||||||||||| |||| ||| |||    || |||||||||| ||||| ||||||| ||||    
T  161593 taaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataacctaaaggaccaatctgttacaaatatcaaatttaaaggacttatgtgtg 161692  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    || |||||||||||||  ||||| |||||| |||| |||||||||||| || || | |||||||||||||    
T  161693 accaaaataacttaaaggatcaatctattacaaacatcaaacttaaaggactccagatctaatttaacct 161762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 161616 - 161400
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| |||| |||||| |||||||  |||| ||| | |||| |||||||| ||||||||| || |||||||   | |||||||||||| || ||||||    
T  161616 aagtttgtaaaagttttcaatttagtcattctgttagccaaaaggatgatgtcgcaaaaggactacattgaaattttgtacaaacttaaaggacttatgt 161517  T
Q  100 gtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacct 195  Q
    || || ||||||| ||||| ||| |||    || |||| ||||||||||| ||||||| |||||| ||||||| |||||  | ||| || ||| ||||||    
T  161516 gtgacaaaaataagttaaaggaccaatctgttacaaatctcaaacttaaaggacttatgtgtgaccaaaataagttaaaggaccaatctgttacaaacct 161417  T
Q  196 caaacttaaagaacccc 212  Q
    ||||||||||| |||||    
T  161416 caaacttaaaggacccc 161400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 64 - 228
Target Start/End: Original strand, 1124 - 1292
Alignment:
Q  64 aaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtga 159  Q
    ||||||||||| |||||||||||||| || |||||||| ||||||||||| |||| ||| |||    || |||||||||||||||||||||||| |||||    
T  1124 aaattgaaaacttttacaaacttaaaggacttatgtgtgaccaaaataacctaaaggaccaatcagttacaaatatcaaacttaaatgacttatgtgtga 1223  T
Q  160 caaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    | |||||||||||||  | ||| || ||| |||| |||||||||||| || || | |||||||||||||    
T  1224 ccaaaataacttaaaggaccaatctgttacaaacgtcaaacttaaaggactccaggtctaatttaacct 1292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 42 - 207
Target Start/End: Original strand, 27052565 - 27052730
Alignment:
Q  42 aagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatca 137  Q
    |||||||||||||||||||| ||||| |||||  ||||||||||||||    |||||||| | |||||||||||||| ||| |||    ||||||  |||    
T  27052565 aagatgatgtggcaaaaggactaaatcgaaaaagtttacaaacttaaa----ttatgtgtgatcaaaataacttaaaggaccaatctgttataaacctca 27052660  T
Q  138 aacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaaga 207  Q
    |||||||| ||||||| || |||||||||||||||||  ||||| |||||| ||||||||||||||||||    
T  27052661 aacttaaaggacttatgtgcgacaaaaataacttaaagaatcaatctattacaaacctcaaacttaaaga 27052730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 4 - 175
Target Start/End: Original strand, 28618766 - 28618942
Alignment:
Q  4 tttataaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaa 103  Q
    |||||||||||||| ||||||||  ||||||||   |||||||||||||| |||| ||||||||||||||| ||||||||||||||| |||||| ||| |    
T  28618766 tttataaacgtttttgatttagtgattctattaaccaaaagatgatgtggtaaaaagaataaattgaaaacgtttacaaacttaaaaaatttatttgtga 28618865  T
Q  104 ccaaaataacttaaatgac----taattataaatatcaaacttaaatgacttatatgtgac-aaaaataacttaaaa 175  Q
    ||||||||||||||| |||    | |||| ||||   ||||||||  ||||||| |||||| |||||||||||||||    
T  28618866 ccaaaataacttaaaggaccattttattacaaatcgtaaacttaacggacttatgtgtgacgaaaaataacttaaaa 28618942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 24827535 - 24827359
Alignment:
Q  34 ttacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgacta----attat 129  Q
    ||||||||| |||||||| ||| ||||| ||||| |||||| |||||||| |||||||| |||||||| || ||||||||||||||||| |    ||||     
T  24827535 ttacaaaaacgatgatgttgcagaaggactaaatcgaaaacgtttacaaatttaaaagacttatgtgtgactaaaataacttaaatgacaaatctattac 24827436  T
Q  130 aaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||| |||||||||||| ||||||  |||||  || ||||||||||  | ||| || ||| |||||||||||||||||    
T  24827435 aaacatcaaacttaaaggacttagttgtgatcaatataacttaaatgaccaatctgttacaaacctcaaacttaaag 24827359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 8 - 206
Target Start/End: Original strand, 6220316 - 6220518
Alignment:
Q  8 taaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaacca 106  Q
    |||| |||||| |||||||| |||||||| | |||| ||||||||| || ||||| |||||||||||| |||| ||||||||| || |||||||| ||||    
T  6220316 taaatgttttcaatttagtacttctattaaccaaaatgatgatgtgacagaaggactaaattgaaaacgttta-aaacttaaaggacttatgtgtgacca 6220414  T
Q  107 aaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaactt 202  Q
     |||||||||||  || ||    ||| |||| |||||||||||  |||||| ||||||||||||||||||||  | |||  | ||| |||||||||||||    
T  6220415 caataacttaaagtaccaatctgttacaaatctcaaacttaaagaacttatgtgtgacaaaaataacttaaagaaccaatttgttacaaacctcaaactt 6220514  T
Q  203 aaag 206  Q
    ||||    
T  6220515 aaag 6220518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 38 - 211
Target Start/End: Complemental strand, 27855731 - 27855554
Alignment:
Q  38 aaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaat 133  Q
    ||||| |||||||||||| ||||| ||||| ||||||||||| ||||||||| ||||||| ||||||||||| |||||||  ||| |||    || |||     
T  27855731 aaaaacgatgatgtggcagaaggactaaatcgaaaacatttaaaaacttaaatgatttatatgtaaccaaaacaacttaagggaccaatctgctacaaac 27855632  T
Q  134 atcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
     || ||||||||||| |||| ||||   |||||||||||||  | ||| |||||| |||||| |||||||||||||||    
T  27855631 ctcgaacttaaatgatttatgtgtgttcaaaataacttaaaggaccaatctattacaaaccttaaacttaaagaaccc 27855554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 8 - 118
Target Start/End: Complemental strand, 27128079 - 27127968
Alignment:
Q  8 taaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaacca 106  Q
    ||||||||||| |||||||  |||| ||| |  ||| |||||||||||| ||||| ||||||||||||||||||||||||||| || |||||||| ||||    
T  27128079 taaacgttttcaatttagtcattctgttaacccaaacgatgatgtggcagaaggactaaattgaaaacatttacaaacttaaaggacttatgtgtgacca 27127980  T
Q  107 aaataacttaaa 118  Q
    ||||||||||||    
T  27127979 aaataacttaaa 27127968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 57 - 228
Target Start/End: Complemental strand, 41151560 - 41151385
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| |||||||||||||||||||||| |||| || |||||||| |||||||||||||||| ||| ||    |||  ||  ||||||||||| ||||||    
T  41151560 aaggactaaattgaaaacatttacaaacataaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttactaaactcaaacttaaaggactta 41151461  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    | |||||  |||||||||||||  | |||  | ||| ||| ||||||||||||| |||  || | |||||||||||    
T  41151460 tgtgtgatcaaaataacttaaaggaccaatatgttacaaaactcaaacttaaaggacctatggtgtaatttaacct 41151385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 63 - 229
Target Start/End: Complemental strand, 6220332 - 6220162
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtg 158  Q
    ||||||||||||||||||||  | |||||| |||||||| || ||||| ||||||||||| ||    ||| |||  ||||||||||| ||||||| |||     
T  6220332 taaattgaaaacatttacaacttaaaaagacttatgtgtgacaaaaattacttaaatgaccaatcagttacaaacctcaaacttaaaggacttatctgtt 6220233  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacctt 229  Q
    ||||||||||||||||  | |||  | ||  ||||||||||||||||| |||| |  | ||||||||||||    
T  6220232 acaaaaataacttaaaggaccaatttgtttcaaacctcaaacttaaaggacccttaatgtaatttaacctt 6220162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 80 - 206
Target Start/End: Complemental strand, 27052540 - 27052410
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaa 175  Q
    |||||||||| || |||||||| ||| |||||||||||| ||| |||    || |||  | |||||||||||||||||||||||| ||||||||||||      
T  27052540 caaacttaaaggacttatgtgtgaccgaaataacttaaaggaccaatgtgttacaaaccttaaacttaaatgacttatatgtgactaaaataacttaagg 27052441  T
Q  176 catcaaactattataaacctcaaacttaaag 206  Q
     | ||| |||||| |||| ||||||||||||    
T  27052440 gaccaatctattacaaacatcaaacttaaag 27052410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 109
Target Start/End: Complemental strand, 14550153 - 14550101
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaa 109  Q
    |||||||||||||||||| |||||||||||||| || ||||||||||||||||    
T  14550153 aaggaataaattgaaaacgtttacaaacttaaaggacttatgtgtaaccaaaa 14550101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 175
Target Start/End: Original strand, 36053038 - 36053151
Alignment:
Q  66 attgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgaca 161  Q
    ||||||||| ||||||||||||||  | |||||||| || ||||||||||||| ||  |||    || |||  ||||| ||||||||||||||||||||     
T  36053038 attgaaaacttttacaaacttaaagaacttatgtgtgactaaaataacttaaaggatcaatattttacaaacctcaaatttaaatgacttatatgtgact 36053137  T
Q  162 aaaataacttaaaa 175  Q
    ||||||||||||||    
T  36053138 aaaataacttaaaa 36053151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 9399994 - 9399811
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa---tgact-aatta 128  Q
    |||||||||| ||| |||||||| || || |||||||||||  ||||||| ||||||||  |||||||| ||||||||||||||||   | |||  ||||    
T  9399994 attacaaaaatgatcatgtggcataatgactaaattgaaaatgtttacaatcttaaaag-cttatgtgtgaccaaaataacttaaagagtcactctatta 9399896  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccct 213  Q
     |||  | ||||||||| ||||||  |||||| ||| |||||||||  | |||  | ||| ||||||||||||||||| ||||||    
T  9399895 caaaccttaaacttaaaggacttacgtgtgaccaaagtaacttaaagaaccaatatgttacaaacctcaaacttaaaggacccct 9399811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 3 - 118
Target Start/End: Original strand, 41151533 - 41151649
Alignment:
Q  3 gtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgt 101  Q
    |||| |||| |||||| |||||||  |||| ||| | |||| |||||||||||| || || |||||| ||| | |||||||||||||| || ||||||||    
T  41151533 gtttgtaaatgttttcaatttagtccttctgttaaccaaaacgatgatgtggcagaatgactaaattcaaaccgtttacaaacttaaaggacttatgtgt 41151632  T
Q  102 aaccaaaataacttaaa 118  Q
     ||||||| ||||||||    
T  41151633 gaccaaaagaacttaaa 41151649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 205
Target Start/End: Original strand, 9400014 - 9400161
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaa-gatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgt 157  Q
    |||||||||||  ||||||||||||||| || |||||||| |||||||||||||||| ||| ||     || |||  ||||||| |||  | |||| |||    
T  9400014 taaattgaaaaggtttacaaacttaaaaggacttatgtgtgaccaaaataacttaaaggaccaacatgctacaaacctcaaactcaaagaatttatgtgt 9400113  T
Q  158 gacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||| |||||||||||||  |||||  | ||| ||||||||||||||||    
T  9400114 gaccaaaataacttaaacgatcaatatgttacaaacctcaaacttaaa 9400161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 116
Target Start/End: Original strand, 14895123 - 14895185
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataactta 116  Q
    ||||| || |||||||||||| |||||||||||||| ||||||| |||| |||| ||||||||    
T  14895123 caaaatgactaaattgaaaacgtttacaaacttaaaggatttatatgtagccaatataactta 14895185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 112
Target Start/End: Original strand, 14895020 - 14895069
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataa 112  Q
    |||||||||||| |||||||| |||||||||||||||||  |||||||||    
T  14895020 taaattgaaaacgtttacaaatttaaaagatttatgtgtggccaaaataa 14895069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 38415013 - 38414957
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaaga-tttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||||||||||||| ||||| || ||||| ||| ||||||||||||||||    
T  38415013 taaattgaaaacatttacaaatttaaaggattttatatgtgaccaaaataacttaaa 38414957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 174
Target Start/End: Original strand, 14550171 - 14550314
Alignment:
Q  37 caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaacc--aaaataacttaaatgacta----attata 130  Q
    |||||| ||||||||| || | |||||||||  ||||  |||||||||||||| || |||||||| |||  ||||||| |||||  ||||    |||| |    
T  14550171 caaaaatgatgatgtgacatacggaataaataaaaaatgtttacaaacttaaatgacttatgtgtgaccaaaaaataatttaaagaactaatccattaca 14550270  T
Q  131 aatatcaaacttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    ||  ||||||||||| ||||||| | |||| |||||||||||||    
T  14550271 aacctcaaacttaaaagacttatgtatgaccaaaataacttaaa 14550314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 127
Target Start/End: Original strand, 14550276 - 14550323
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt 127  Q
    ||||||||||||| |||||| | |||||||||||||||| ||||||||    
T  14550276 caaacttaaaagacttatgtatgaccaaaataacttaaaggactaatt 14550323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 27128063 - 27128118
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||||| |||||| ||| |||| | |||||||| ||||||||||||||||    
T  27128063 taaattgaaaacgtttacagactgaaaaaacttatgtgtgaccaaaataacttaaa 27128118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 15564046 - 15564116
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||| ||||| ||||||| ||| |||||||||||||| || ||||| |||||| |||| ||||| ||||||    
T  15564046 caaatttaaaggacttatgtgtaacaaaaataacttagaagatcaatctattacaaacttcaaatttaaag 15564116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 20209416 - 20209354
Alignment:
Q  56 aaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||| ||||| |||||  ||||||||||||||  |||||| ||| ||||||||||||||||    
T  20209416 aaaggactaaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 20209354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 118
Target Start/End: Complemental strand, 20229124 - 20229062
Alignment:
Q  56 aaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||| ||||| |||||  ||||||||||||||  |||||| ||| ||||||||||||||||    
T  20229124 aaaggactaaatagaaaatgtttacaaacttaaagtatttatttgtgaccaaaataacttaaa 20229062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 20209465 - 20209534
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||  |||||| |||||| |||||||||||||  ||||| || ||| ||||||||||| ||||    
T  20209465 caaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaa 20209534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 20229173 - 20229242
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||  |||||| |||||| |||||||||||||  ||||| || ||| ||||||||||| ||||    
T  20229173 caaacttaaagtacttatttgtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacgtaaa 20229242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 27128006 - 27127938
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    |||||||||| ||||||| |||||| |||||||||||||  ||||| || ||| ||| ||||||||||||    
T  27128006 caaacttaaaggacttatgtgtgaccaaaataacttaaagaatcaatctgttacaaa-ctcaaacttaaa 27127938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 209
Target Start/End: Original strand, 6220389 - 6220461
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    ||||||||| ||||||| |||||| | |||||||||||  | ||| || ||| ||| ||||||||||||||||    
T  6220389 aaacttaaaggacttatgtgtgaccacaataacttaaagtaccaatctgttacaaatctcaaacttaaagaac 6220461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 175
Target Start/End: Complemental strand, 15563917 - 15563877
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaa 175  Q
    ||||||||||| ||||||| |||||| ||||||||||||||    
T  15563917 tcaaacttaaaagacttatgtgtgactaaaataacttaaaa 15563877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 205
Target Start/End: Complemental strand, 38414700 - 38414656
Alignment:
Q  161 aaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||| ||||||||||||||| || ||| ||||||||||||||||    
T  38414700 aaaaaaaacttaaaacatcaatctgttacaaacctcaaacttaaa 38414656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 54)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 57 - 213
Target Start/End: Original strand, 18020004 - 18020164
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| |||||||||||  ||| ||||||||||||| ||||||||||||||||||||||||| ||| ||    |||||||  | ||||||||| ||||||    
T  18020004 aaggactaaattgaaaaggtttgcaaacttaaaagacttatgtgtaaccaaaataacttaaacgaccaatctgttataaaccttaaacttaaaggactta 18020103  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccct 213  Q
    | | |||| |||||||||||||  ||||| |||||| ||||||||||||||||| ||||||    
T  18020104 tgtttgaccaaaataacttaaataatcaatctattacaaacctcaaacttaaaggacccct 18020164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 14965032 - 14964919
Alignment:
Q  8 taaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaa 107  Q
    |||| ||||||||||||||  ||||||||| ||||| ||||||||||| ||||| |||||||||||| |||||||||||||| || |||||||| |||||    
T  14965032 taaatgttttcgatttagtccttctattactaaaaa-atgatgtggcagaaggactaaattgaaaacctttacaaacttaaaggacttatgtgtgaccaa 14964934  T
Q  108 aataacttaaatgac 122  Q
    |||||||||||||||    
T  14964933 aataacttaaatgac 14964919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 206
Target Start/End: Complemental strand, 25848466 - 25848289
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgacta----atta 128  Q
    |||||||||| ||| |||||||| ||||| ||||| | |||| |||||||||||||||||||| ||||| |||||||||||||||  |||||    ||||    
T  25848466 attacaaaaatgattatgtggcagaaggactaaatcgcaaacgtttacaaacttaaaagatttttgtgtgaccaaaataacttaacggactaatctatta 25848367  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
     |||  ||||||||||| ||||| | |||||| |||||||||||||  |||||  ||||| ||| |||||||||||||    
T  25848366 caaacctcaaacttaaaggacttgtgtgtgaccaaaataacttaaaggatcaatttattacaaatctcaaacttaaag 25848289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 34 - 234
Target Start/End: Complemental strand, 47891287 - 47891085
Alignment:
Q  34 ttacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tat 129  Q
    ||||||||| ||||||||| ||||| || ||||| |||||||||||||||||||||||| | || ||  |||||||||||||||| ||  |||    ||     
T  47891287 ttacaaaaacgatgatgtgacaaaatgactaaatcgaaaacatttacaaacttaaaagactaatatgcgaccaaaataacttaaaggatcaatctggtac 47891188  T
Q  130 aaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacctt 229  Q
    |||  ||||||||||||||||||  |||||| ||||||| |||||| ||||| || ||| |||||||||| |||||| ||||||  | ||||||||||||    
T  47891187 aaacctcaaacttaaatgacttaggtgtgaccaaaataatttaaaagatcaatctgttacaaacctcaaa-ttaaag-acccctaatataatttaacctt 47891090  T
Q  230 aattt 234  Q
    |||||    
T  47891089 aattt 47891085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 43650163 - 43649990
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----tta 128  Q
    |||||||||| |||||||||||| || || ||||| |||||  |||||||||||||||||||||||||| | |||||||||||||||||| ||    |||    
T  43650163 attacaaaaacgatgatgtggcagaaagactaaatcgaaaatgtttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgaccaatctctta 43650064  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaactt 202  Q
     ||   ||||||||||| || |||| |||||| |||||||||||||| | |||  ||||| ||| |||||||||    
T  43650063 caatcctcaaacttaaaggatttatgtgtgacgaaaataacttaaaagaccaatttattacaaatctcaaactt 43649990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 28813986 - 28813843
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatg----actaattataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||| ||||||||||| || || |||||||| ||||||||||||||||||    | | |||| |||| |||||||||||  |||||||||||    
T  28813986 taaattgaaaacgtttacaaacttgaaggacttatgtgtgaccaaaataacttaaatgatcaatttattacaaatctcaaacttaaagaacttatatgtg 28813887  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaactta 203  Q
    ||  ||||||||| ||| ||||| |||||| ||||||||||||||    
T  28813886 acctaaataactt-aaagatcaatctattacaaacctcaaactta 28813843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 45 - 207
Target Start/End: Complemental strand, 252213 - 252047
Alignment:
Q  45 atgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaac 140  Q
    ||||||||| | |||||  |||| |||||| |||||||||||||| || |||| ||| |||||||||||||||| |||| ||    || |||  | ||||    
T  252213 atgatgtggtagaaggaccaaatcgaaaacgtttacaaacttaaaggacttatttgtgaccaaaataacttaaaagactgatctgttacaaaccttaaac 252114  T
Q  141 ttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaaga 207  Q
    ||||| ||||||  |||||| |||||||||||||  | ||| |||||||||||||||||||||||||    
T  252113 ttaaaggacttacgtgtgaccaaaataacttaaatgaccaatctattataaacctcaaacttaaaga 252047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 7607674 - 7607837
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa--tgactaa-ttataaatatcaaacttaaatgacttatatgtga 159  Q
    ||||| |||||| |||| |||||||||||| ||||| || ||||||||||||||||  | | ||  ||| ||| ||||||||||||||||||||||  ||    
T  7607674 taaatggaaaacgtttagaaacttaaaagacttatgcgtgaccaaaataacttaaaaatcaatatgttacaaacatcaaacttaaatgacttatataaga 7607773  T
Q  160 caaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    | |||||||||||||| | | ||||||||||||| |||||||||||| |||| || | |||||||    
T  7607774 cgaaaataacttaaaa-aaccaactattataaacttcaaacttaaaggacccttggtgtaattta 7607837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 57 - 202
Target Start/End: Original strand, 25848480 - 25848629
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| ||||||||||||||||||||||||||| ||  ||||||| |||||||||||||||| ||| ||    ||| |||  | ||| ||||| ||||||    
T  25848480 aaggactaaattgaaaacatttacaaacttaaaggacatatgtgtgaccaaaataacttaaaggaccaatgtgttacaaacctaaaatttaaaggactta 25848579  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaactt 202  Q
    | |||||  |||||||||||||| |||||  ||||| |||||||||||||    
T  25848580 tgtgtgattaaaataacttaaaagatcaatttattacaaacctcaaactt 25848629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 32186638 - 32186459
Alignment:
Q  36 acaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaat----gactaattataa 131  Q
    ||||||| |||||||||| | ||||| ||||| |||||| |||| ||||||||| || |||||||| || ||||||||||||||    ||  | ||||||    
T  32186638 acaaaaatgatgatgtggtagaaggactaaatcgaaaacgtttaaaaacttaaaggacttatgtgttacaaaaataacttaaatgatcgatcagttataa 32186539  T
Q  132 atatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
    |  ||||||||||| ||||||  |||||| |||||| ||||||  | |||  ||||| ||||||||||||||||| ||||    
T  32186538 acctcaaacttaaaagacttaggtgtgaccaaaatagcttaaaggaccaatatattacaaacctcaaacttaaaggaccc 32186459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 67 - 206
Target Start/End: Complemental strand, 45131578 - 45131441
Alignment:
Q  67 ttgaaaacatttacaaacttaaaag-atttatgtgtaaccaaaataacttaaatgactaattataaatatcaaacttaaatgacttatatgtgacaaaaa 165  Q
    ||||||||||||||||||||||||| | |||||||| || |||||||| |||| ||| || ||   |   |||||||||| ||||||||||| |||||||    
T  45131578 ttgaaaacatttacaaacttaaaaggacttatgtgtgacaaaaataacataaaggaccaactagtta---caaacttaaaagacttatatgttacaaaaa 45131482  T
Q  166 taacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||||||  ||||| || ||| |||||||||||||||||    
T  45131481 taacttaaatgatcaatctgttacaaacctcaaacttaaag 45131441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 47891302 - 47891477
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||| ||| ||    ||  |||  ||||||| ||| ||||||    
T  47891302 aaggactaaattgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaaggaccaatatgttgcaaacctcaaactcaaaggactta 47891401  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    | |||||  |||||||||||||  |||||  | ||| |||  |||||||||||| |||| || | |||||||||||    
T  47891402 tgtgtgatcaaaataacttaaaggatcaatttgttacaaatttcaaacttaaaggacccttgatgtaatttaacct 47891477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 63 - 207
Target Start/End: Complemental strand, 27768455 - 27768307
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||| ||||| |||||||||||||| ||||||||||| | ||||||||| ||||||| |||    ||| ||| |||| ||||||| || |||| |||     
T  27768455 taaatttaaaacgtttacaaacttaaaggatttatgtgtgatcaaaataacataaatgattaatcttttacaaacatcatacttaaaagatttatgtgta 27768356  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaaga 207  Q
    |  |||||||||||||  ||||| |||||| |||| |||||||||||||    
T  27768355 atcaaaataacttaaatgatcaacctattacaaacttcaaacttaaaga 27768307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 26724222 - 26724096
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||||||||||||||| |||||||  || | ||| | ||||  | ||||||||| || || |||||||||||| |||| ||||||||| || |||| |    
T  26724222 aagtttataaacgttttcaatttagtccttttgttaaccaaaacaacgatgtggcagaatgactaaattgaaaacttttataaacttaaaggacttatat 26724123  T
Q  100 gtaaccaaaataacttaaatgactaat 126  Q
    || ||||||||||||||||||||||||    
T  26724122 gtgaccaaaataacttaaatgactaat 26724096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 14 - 118
Target Start/End: Original strand, 14624185 - 14624290
Alignment:
Q  14 ttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataa 112  Q
    ||||| |||||||  |||||||| | |||| ||||||||| || ||| | |||||||||||| ||||||||||||||||| |||||||| |||| |||||    
T  14624185 ttttcaatttagtccttctattaaccaaaacgatgatgtgacagaagaattaaattgaaaacgtttacaaacttaaaagacttatgtgtgaccagaataa 14624284  T
Q  113 cttaaa 118  Q
    ||||||    
T  14624285 cttaaa 14624290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 26724190 - 26724345
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagat-ttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatga 148  Q
    |||||||| |||||||||||| |||| ||||||||||||  || ||| | ||||||||||||||||  ||||||    || | |  ||||| ||||| ||    
T  26724190 caaaaggactaaattgaaaacgtttataaacttaaaagaacttgtgtatgaccaaaataacttaaa--actaatctgttagagacctcaaatttaaagga 26724287  T
Q  149 cttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||| |||||| |||||||||||||  ||||| |||||| |||||||||||||||||    
T  26724288 cttatgtgtgacgaaaataacttaaagaatcaatctattacaaacctcaaacttaaag 26724345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 171
Target Start/End: Complemental strand, 40286417 - 40286275
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----tta 128  Q
    |||||||||| ||||||||| || ||| | ||||| ||||| ||||||||||||||| || || ||||| |||||||||||||||| ||  ||    |||    
T  40286417 attacaaaaacgatgatgtgacagaagtactaaatcgaaaatatttacaaacttaaaggacttctgtgtgaccaaaataacttaaaggaacaatatgtta 40286318  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataactt 171  Q
    ||||  ||||||||||| ||||||| |||||  ||||||||||    
T  40286317 taaacctcaaacttaaaggacttatgtgtgatcaaaataactt 40286275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 54 - 118
Target Start/End: Original strand, 32186652 - 32186716
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||| || |||||||||||| ||||||||||||||  |||||||||||||||||||||||||||    
T  32186652 caaaaagactaaattgaaaacgtttacaaacttaaagaatttatgtgtaaccaaaataacttaaa 32186716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 45 - 206
Target Start/End: Original strand, 50332604 - 50332768
Alignment:
Q  45 atgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt----ataaatatcaaac 140  Q
    |||||||| || || || |||||||||||| |||||||| ||||| |||||||||||  | ||||||||||| | || |||||    | |||  ||||||    
T  50332604 atgatgtgacagaatgattaaattgaaaacttttacaaagttaaa-gatttatgtgtggcaaaaataacttagaggattaatttgtaacaaacctcaaac 50332702  T
Q  141 ttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||| ||||||| ||| || |||||||||||||| |||||  ||||| |||| ||||||||||||    
T  50332703 ttaaaggacttatgtgtaaccaaaataacttaaaagatcaatttattacaaacatcaaacttaaag 50332768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 39714547 - 39714694
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatg----actaattataaatatcaaactt-aaatgacttatatgt 157  Q
    |||||||||||| |||||||||| ||| || |||||||||| |||||||| |||||||    | | |||| |||  |||||||| ||| || |||| |||    
T  39714547 taaattgaaaacgtttacaaactcaaatgacttatgtgtaatcaaaataatttaaatgatcaatttattacaaacctcaaacttaaaaggatttatgtgt 39714646  T
Q  158 gacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||| |||||||||| ||||||||| || ||| |||||||||||||||||    
T  39714647 gaccaaaataactt-aaacatcaatctgttaaaaacctcaaacttaaag 39714694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 40209800 - 40209918
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| ||||||||||| |||||||  |||| ||| | |||| ||| |||||||| || || |||||||||||| ||| |||||||||| || ||||||    
T  40209800 aagtttgtaaacgttttcaatttagttattctgttaaccaaaacgattatgtggcagaatgactaaattgaaaacttttgcaaacttaaacgacttatgt 40209899  T
Q  100 gtaaccaaaataacttaaa 118  Q
    || ||||||||| ||||||    
T  40209900 gtgaccaaaatatcttaaa 40209918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 172
Target Start/End: Complemental strand, 5442605 - 5442491
Alignment:
Q  63 taaattgaaaacatttacaaactt-aaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgt 157  Q
    ||||||||||||||||||||| || |||||| |||| ||| |||||||||||||||| ||| ||    ||| |||  ||||||||||| || ||||||||    
T  5442605 taaattgaaaacatttacaaattttaaaagacttatctgtgaccaaaataacttaaaggacgaatcatttacaaacctcaaacttaaaggagttatatgt 5442506  T
Q  158 gacaaaaataactta 172  Q
    ||| |||||||||||    
T  5442505 gaccaaaataactta 5442491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 116
Target Start/End: Complemental strand, 26976465 - 26976412
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataactta 116  Q
    ||||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  26976465 taaattgaaaacgattacaaacttaaaagatttttgtgtaaccaaaataactta 26976412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 63 - 205
Target Start/End: Complemental strand, 46337651 - 46337505
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtg 158  Q
    ||||| |||||  |||||||||||||| ||||||| ||| ||||||||||||||||  | |||    ||| |||  ||||||||||| ||||||| ||||    
T  46337651 taaatcgaaaatttttacaaacttaaaggatttatctgtgaccaaaataacttaaagaattaatatgttacaaacttcaaacttaaaggacttatgtgtg 46337552  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    || ||||||| |||||  |||||  | ||| ||||||||||||||||    
T  46337551 accaaaataatttaaagaatcaatatgttacaaacctcaaacttaaa 46337505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 36667239 - 36667323
Alignment:
Q  34 ttacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||| |||||||||| | || || ||||| ||  || ||||||||||||||||| |||||||| ||||||||||||||||    
T  36667239 ttacaaaaacgatgatgtgggagaatgactaaatcgactacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 36667323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 47573835 - 47573938
Alignment:
Q  15 tttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataac 113  Q
    |||| |||||||  |||||||| | |||| |||||||||||| ||||| |||||||||||| ||||| ||||| ||||| |||| ||| |||||||||||    
T  47573835 tttcaatttagtccttctattaaccaaaatgatgatgtggcagaaggattaaattgaaaacgtttacgaactt-aaagacttatatgtgaccaaaataac 47573933  T
Q  114 ttaaa 118  Q
    |||||    
T  47573934 ttaaa 47573938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 13902992 - 13903055
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat 126  Q
    |||||||||||| |||||||| ||||| || |||| |||||||||||||||||||| |||||||    
T  13902992 taaattgaaaacgtttacaaatttaaaggacttatatgtaaccaaaataacttaaaagactaat 13903055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 205
Target Start/End: Original strand, 47573903 - 47573969
Alignment:
Q  138 aacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    |||||||| |||||||||||||| |||||||||||||  ||||| |||||| ||||||||||||||||    
T  47573903 aacttaaa-gacttatatgtgaccaaaataacttaaaggatcaatctattacaaacctcaaacttaaa 47573969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 135 - 209
Target Start/End: Complemental strand, 3169786 - 3169712
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    ||||||||||| || ||||||||||| |||||||||||||  | ||| |||||| |||||| |||||||||||||    
T  3169786 tcaaacttaaaagatttatatgtgactaaaataacttaaagaaccaatctattacaaaccttaaacttaaagaac 3169712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 26976491 - 26976544
Alignment:
Q  70 aaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgact 123  Q
    |||||||||||||||||||| || |||||||| |||||||||||||||| ||||    
T  26976491 aaaacatttacaaacttaaatgacttatgtgtgaccaaaataacttaaaggact 26976544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 224
Target Start/End: Original strand, 39541445 - 39541522
Alignment:
Q  147 gacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    |||||||||||||| |||||||||||||  ||||| |  ||| ||||||||||||||||| ||||||| | |||||||    
T  39541445 gacttatatgtgaccaaaataacttaaaggatcaatccgttacaaacctcaaacttaaaggacccctgatgtaattta 39541522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 135 - 224
Target Start/End: Original strand, 40286511 - 40286600
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    ||||||||||| ||||||| || || ||||||||||||||  |||||||  ||| |||||||||| |||||| ||||||| | |||||||    
T  40286511 tcaaacttaaaggacttatgtgcgataaaaataacttaaaggatcaaacggttacaaacctcaaatttaaaggacccctggtataattta 40286600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 63 - 208
Target Start/End: Original strand, 36900062 - 36900211
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||  |||||||||||||| ||||||||||  |  ||||||||||||| ||  |||    || |||  | ||||||||| ||| ||| |||     
T  36900062 taaattgaaaatgtttacaaacttaaaggatttatgtgagattaaaataacttaaacgatcaatctcttacaaaccttaaacttaaaggacctatgtgta 36900161  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaa 208  Q
    || |||||||||||||  | ||| |||||||||| |||||||||||||||    
T  36900162 accaaaataacttaaaggaccaatctattataaatctcaaacttaaagaa 36900211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 3169617 - 3169562
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||||||||||||||||||||||  | ||| | ||||||||||||||||    
T  3169617 taaattgaaaacatttacaaacttaaaagacctgtgtatgaccaaaataacttaaa 3169562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 25848622 - 25848716
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaac-atcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    |||||||| || ||||||| ||| || ||||||||||||||  | |||  ||||||||||||||||||||||| |||| || | |||||||||||    
T  25848622 tcaaactttaaggacttatgtgttaccaaaataacttaaaaggaccaatttattataaacctcaaacttaaaggacccatggtgtaatttaacct 25848716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 47069740 - 47069626
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| ||||||||||| |||||||  || | ||| | |||| |||||||||| | ||| | |||||||||||| ||||| |||| ||| || ||||||    
T  47069740 aagtttgtaaacgttttcaatttagtcattatgttaaccaaaacgatgatgtggtagaagaactaaattgaaaacgtttacgaactcaaaggacttatgt 47069641  T
Q  100 gtaaccaaaataact 114  Q
    || ||||||||||||    
T  47069640 gtgaccaaaataact 47069626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 28813969 - 28813896
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    ||||||| || ||||||| |||||| |||||||||||||  |||||  ||||| ||| ||||||||||||||||    
T  28813969 caaacttgaaggacttatgtgtgaccaaaataacttaaatgatcaatttattacaaatctcaaacttaaagaac 28813896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 36667232 - 36667164
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat 126  Q
    ||||| |||||||||||| ||||||||  ||||||| |||||||| |||||||||||||||  |||||||    
T  36667232 aaggactaaattgaaaacgtttacaaatctaaaaga-ttatgtgtgaccaaaataacttaagagactaat 36667164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 104
Target Start/End: Complemental strand, 18019990 - 18019930
Alignment:
Q  44 gatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaac 104  Q
    |||||||||||| ||||| |||||||||| | |||||||||||||| || |||| ||||||    
T  18019990 gatgatgtggcagaaggactaaattgaaagcgtttacaaacttaaaggacttatatgtaac 18019930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 205
Target Start/End: Complemental strand, 49364376 - 49364308
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||||||||||||| |  |||||||||||||  |||||  ||||||||||||| || |||||    
T  49364376 aaacttaaatgacttatatgtaaacaaaataacttaaatgatcaatttattataaacctccaatttaaa 49364308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 120
Target Start/End: Complemental strand, 14624201 - 14624139
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatg 120  Q
    ||||| ||||||||||| ||||||| ||||||| || |||||||| ||||||| ||||||||||    
T  14624201 aaggactaaattgaaaatatttacagacttaaatgacttatgtgtgaccaaaa-aacttaaatg 14624139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 123
Target Start/End: Original strand, 43650177 - 43650244
Alignment:
Q  57 aaggaataaattgaaaacatttacaaa-cttaaaagatttatgtgtaaccaaaataacttaaatgact 123  Q
    ||||| ||| ||||||| ||||||||| |||||| || |||||||| |||||||||||||||| ||||    
T  43650177 aaggactaagttgaaaagatttacaaatcttaaaggacttatgtgttaccaaaataacttaaaggact 43650244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 174
Target Start/End: Original strand, 45131669 - 45131708
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    ||||||||||| ||||||||| ||||||||||||||||||    
T  45131669 tcaaacttaaaagacttatatatgacaaaaataacttaaa 45131708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 211
Target Start/End: Original strand, 47069734 - 47069809
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
    |||||||||| |||||||||||||| ||| | |||||||  | ||| || ||| ||||||||||||||||| ||||    
T  47069734 caaacttaaaggacttatatgtgacgaaattcacttaaatgaccaatctgttacaaacctcaaacttaaaggaccc 47069809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 50332582 - 50332527
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||||| |||||||||||||| || |||| ||| | ||||||||||||||    
T  50332582 taaattgaaaacgtttacaaacttaaatgacttatatgtgatcaaaataacttaaa 50332527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Original strand, 26976501 - 26976539
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    |||||||||||||||||| |||||| |||||||||||||    
T  26976501 caaacttaaatgacttatgtgtgaccaaaataacttaaa 26976539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 30955005 - 30955078
Alignment:
Q  130 aaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaa 204  Q
    |||| |||||| |||| ||||||| |||||| |||||||||| |||||  || |||||| |||||||||||||||    
T  30955005 aaatctcaaacataaaggacttatgtgtgaccaaaataactt-aaacactaatctattacaaacctcaaacttaa 30955078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 30970817 - 30970890
Alignment:
Q  130 aaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaa 204  Q
    |||| |||||| |||| ||||||| |||||| |||||||||| |||||  || |||||| |||||||||||||||    
T  30970817 aaatctcaaacataaaggacttatgtgtgaccaaaataactt-aaacactaatctattacaaacctcaaacttaa 30970890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Original strand, 32186678 - 32186748
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||||  | |||| ||| || ||||||||||||||||||||  | ||| |||||||||||||||||    
T  32186678 caaacttaaagaatttatgtgtaaccaaaataacttaaaacatcaatatgttacaaacctcaaacttaaag 32186748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 40286370 - 40286300
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||||||| ||||| | |||||| |||||||||||||  | |||  | |||||||||||||||||||||    
T  40286370 caaacttaaaggacttctgtgtgaccaaaataacttaaaggaacaatatgttataaacctcaaacttaaag 40286300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 174
Target Start/End: Complemental strand, 50332565 - 50332527
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    ||||||||||||||||||||||||  |||||||||||||    
T  50332565 caaacttaaatgacttatatgtgatcaaaataacttaaa 50332527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 54343448 - 54343506
Alignment:
Q  69 gaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt 127  Q
    ||||| || |||||||||||||||||||||||| | |||||||||  ||||||| ||||    
T  54343448 gaaaatatctacaaacttaaaagatttatgtgtgatcaaaataacacaaatgaccaatt 54343506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 174
Target Start/End: Complemental strand, 26724141 - 26724104
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  26724141 aaacttaaaggacttatatgtgaccaaaataacttaaa 26724104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 39541416 - 39541472
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaa-gatttatgtgtaaccaaaataacttaaa 118  Q
    ||||| ||||| |||||||||||||||| || |||| ||| ||||||||||||||||    
T  39541416 taaatcgaaaatatttacaaacttaaaaggacttatatgtgaccaaaataacttaaa 39541472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 54)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 16327253 - 16327082
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| |||||||||||| |||||||||||||| || |||||||| |||||||||||||||| ||| ||    ||| |||  ||||||||||| ||||||    
T  16327253 aaggactaaattgaaaacgtttacaaacttaaaggacttatgtgttaccaaaataacttaaacgaccaatctgttacaaacctcaaacttaaaggactta 16327154  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    | || ||| |||||||||||||  ||||| |||||| ||||||| ||||||||| ||| ||| | |||||||    
T  16327153 tgtgcgactaaaataacttaaacgatcaatctattacaaacctctaacttaaaggacctctggtgtaattta 16327082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 54 - 206
Target Start/End: Complemental strand, 1996300 - 1996144
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgacta----attataaatatcaaacttaaatgac 149  Q
    ||||| || |||||||||||| |||||||||||| | || |||||||| |||||||||||||||| |||||    |||| |||   |||||||||| ||     
T  1996300 caaaaagactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaaggactaatctattacaaaccccaaacttaaaggat 1996201  T
Q  150 ttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||||| |||||||||||||| ||||| || ||| ||| |||||||||||||    
T  1996200 ttatatgtgaccaaaataacttaaaatatcaatctgttacaaatctcaaacttaaag 1996144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 28559447 - 28559232
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctattacaaaaaa-gatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||||||||||||||| |||||||  |||  |||   |||| ||||||||| || ||||| |||||||||||| |||||||||||||| || ||||||    
T  28559447 aagtttataaacgttttcaatttagtcattccgttaagcaaaacgatgatgtgccataaggattaaattgaaaacgtttacaaacttaaaggacttatgt 28559348  T
Q  100 gtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacct 195  Q
    || |||||||||||||||| ||| ||    ||| |||  ||||||| || ||||||||  || ||||||||||||||||  | ||| || ||| |||| |    
T  28559347 gtgaccaaaataacttaaaggaccaatctgttacaaacctcaaactgaattgacttatgcgtaacaaaaataacttaaaggaccaatctgttacaaacgt 28559248  T
Q  196 caaacttaaagaaccc 211  Q
    ||||||||||| ||||    
T  28559247 caaacttaaaggaccc 28559232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 12774337 - 12774506
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaaga--tttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatg 156  Q
    |||||||||||| ||||||||||||||||   |||||| || |||||||||||||||| ||  |||    || |||| ||||||||||| ||||||| ||    
T  12774337 taaattgaaaacgtttacaaacttaaaaggactttatgcgtgaccaaaataacttaaaagatcaatatgttagaaatctcaaacttaaaggacttatgtg 12774436  T
Q  157 tgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaac 226  Q
    ||||||||||||||||||  |  || |||||||||| |||||| ||||||||||| || | |||||||||    
T  12774437 tgacaaaaataacttaaatgactaacctattataaagctcaaatttaaagaacccttgatataatttaac 12774506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 12713073 - 12713242
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaa-ga-tttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatg 156  Q
    |||||||||||| ||||||||||||||| || |||||| || |||||||||||||||| ||  |||    || |||| ||||||||||| ||||||| ||    
T  12713073 taaattgaaaacgtttacaaacttaaaaagactttatgcgtgaccaaaataacttaaaagatcaatatgttagaaatctcaaacttaaaggacttatgtg 12713172  T
Q  157 tgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaac 226  Q
    ||||||||||||||||||  |  || |||||||||| |||||| ||||||||||| || | |||||||||    
T  12713173 tgacaaaaataacttaaatgactaacctattataaagctcaaatttaaagaacccttgatataatttaac 12713242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 35461562 - 35461771
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtg 100  Q
    |||||| |||| ||||||||||||||  || |||||   |||  ||||||||| | || || |||  ||||| | ||||||||||||||||| |||| ||    
T  35461562 aagtttgtaaaagttttcgatttagtccttatattaaccaaacaatgatgtggtagaatgactaatatgaaagcgtttacaaacttaaaagagttatttg 35461661  T
Q  101 taaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctc 196  Q
    | || ||||||||||||||||  |||    || |||| ||||| ||||||||||||| |||||| |||||||||||||  | ||| |||||| |||||||    
T  35461662 tgacaaaaataacttaaatgatcaatctgttacaaatctcaaaattaaatgacttatgtgtgaccaaaataacttaaaggaccaatctattacaaacctc 35461761  T
Q  197 aaacttaaag 206  Q
    ||||||||||    
T  35461762 aaacttaaag 35461771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 16327224 - 16327432
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| ||||||||||| |||||||  || | ||| | |||| |||||||||||| ||||| |||||||||||| ||||||||||||||  | |||| |    
T  16327224 aagtttgtaaacgttttcaatttagtccttatgttaaccaaaacgatgatgtggcagaaggactaaattgaaaacgtttacaaacttaaagtacttattt 16327323  T
Q  100 gtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacct 195  Q
    || |||||||||||||||| ||  ||    ||| |||  ||||||||||| ||||  |||||| | |||||||||||||  || || |||||| ||||||    
T  16327324 gtgaccaaaataacttaaaggatcaatctgttacaaacctcaaacttaaaggact--tatgtgtctaaaataacttaaatgattaatctattacaaacct 16327421  T
Q  196 caaacttaaag 206  Q
    |||||||||||    
T  16327422 caaacttaaag 16327432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 94 - 228
Target Start/End: Complemental strand, 19550217 - 19550080
Alignment:
Q  94 ttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattat 189  Q
    ||||||||||||||||||||||||||||  ||    ||| |||| ||||||||||| ||||||| ||| || |||||||||||||  ||||| ||||||     
T  19550217 ttatgtgtaaccaaaataacttaaatgatcaaaatgttaaaaatctcaaacttaaaagacttatgtgtcaccaaaataacttaaagaatcaatctattac 19550118  T
Q  190 aaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    ||||||||||||||||| |||||||   |||||||||||    
T  19550117 aaacctcaaacttaaag-acccctgcggtaatttaacct 19550080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 23662050 - 23661881
Alignment:
Q  39 aaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataactt-aaatgact-aattataaatatc 136  Q
    |||| |||||||| ||| | ||| |||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |||| | |   | | |||||||    
T  23662050 aaaaggatgatgtcgcagatggactaaatttaaaacttttacaaacttaaaagacttatgtgtgaccaaaataacttaaaatcaatctgtcacaaatatc 23661951  T
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||| ||||||| ||| || |||||||||||||| ||||| || ||| |||| ||||| ||||||    
T  23661950 aaacttaaaggacttatgtgtaaccaaaataacttaaaagatcaatctgttacaaacgtcaaatttaaag 23661881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 63 - 206
Target Start/End: Original strand, 23796544 - 23796689
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataactt-aaatgact-aattataaatatcaaacttaaatgacttatatgtgac 160  Q
    |||||| ||||| ||||||||||||||||| |||||||| ||||||||||||| |||| | |   | | |||||||||||||||| ||||||| ||| ||    
T  23796544 taaatttaaaacttttacaaacttaaaagacttatgtgtgaccaaaataacttaaaatcaatctgtcacaaatatcaaacttaaaggacttatgtgtaac 23796643  T
Q  161 aaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
     |||||||||||||| ||||| || ||| |||| ||||| ||||||    
T  23796644 caaaataacttaaaagatcaatctgttacaaacgtcaaatttaaag 23796689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 37642920 - 37643037
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtg 100  Q
    |||||| |||||||||||||||||||  ||||||||   |||||||||||||| ||||||| ||| | |||| | |||||||||||||| || |||| ||    
T  37642920 aagtttgtaaacgttttcgatttagtcattctattaaccaaaagatgatgtggtaaaaggactaattcgaaaccgtttacaaacttaaaggacttatttg 37643019  T
Q  101 taaccaaaataacttaaa 118  Q
    | |||||||||| |||||    
T  37643020 tgaccaaaataatttaaa 37643037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 205
Target Start/End: Complemental strand, 20928000 - 20927848
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgac----taattataaatatcaaacttaaatgactta 152  Q
    ||||| ||||| |||||  ||||||||||||||||| |||  ||| ||||||||||||||||||||    | |||| |||  ||||| ||||| ||||||    
T  20928000 aaggactaaatcgaaaatgtttacaaacttaaaagacttacttgtgaccaaaataacttaaatgaccaatttattacaaacctcaaatttaaaggactta 20927901  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    | ||| || |||||||||||||  ||||| |||||| ||| ||||||||||||    
T  20927900 tgtgtaactaaaataacttaaatgatcaatctattacaaatctcaaacttaaa 20927848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 38680773 - 38680632
Alignment:
Q  64 aaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaattataaatatcaaacttaaatgacttatatgtgacaaa 163  Q
    ||||||||||  |||||||| ||||| ||||| ||| |||||||||||||||||||||||  ||| |||   |||| ||||| || |||| |||||| ||    
T  38680773 aaattgaaaatgtttacaaatttaaaggatttttgtataaccaaaataacttaaatgact-gttacaaaccgcaaaattaaaagatttatgtgtgaccaa 38680675  T
Q  164 aataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||||||||   |||| |||||| |||| ||||||||||||    
T  38680674 aataacttaaagggtcaatctattacaaacttcaaacttaaag 38680632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 7209937 - 7209878
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgac 122  Q
    |||||||||||| |||||||||||||| || |||||||| ||||||||||||||||||||    
T  7209937 taaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaatgac 7209878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 173
Target Start/End: Complemental strand, 25456430 - 25456310
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| ||||| |||||||||||| ||||||||||| |||| ||| |||||||||||||||| ||| ||    ||| |||  ||||||||||| ||||||    
T  25456430 aaggactaaatcgaaaacatttaccaacttaaaagacttatttgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggactta 25456331  T
Q  153 tatgtgacaaaaataacttaa 173  Q
    | |||||  ||||||||||||    
T  25456330 tgtgtgatcaaaataacttaa 25456310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 25456408 - 25456614
Alignment:
Q  8 taaacgttttcgatttagtatttctattacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaa 107  Q
    |||| ||||||||||||||  ||||||||   |||  |||| |||| | ||||| |||||  ||||| |||| |||||||||||| || | ||| |||||    
T  25456408 taaatgttttcgatttagtccttctattaagcaaacaatgacgtggtagaaggattaaatcaaaaacttttaaaaacttaaaagaattctttgtgaccaa 25456507  T
Q  108 aataacttaaatgacta----attataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaactta 203  Q
    ||||||||||| ||| |    |||| |||  |||||||||||  | |||| |||||| |||||||||| ||| | ||| || ||| ||||||||||||||    
T  25456508 aataacttaaaggaccaatctattacaaacctcaaacttaaagtatttatgtgtgactaaaataactt-aaagaccaatctgttacaaacctcaaactta 25456606  T
Q  204 aagaaccc 211  Q
    ||||||||    
T  25456607 aagaaccc 25456614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 206
Target Start/End: Complemental strand, 32361317 - 32361170
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt----ataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||||||| |||  |||||  | |||||| | |||||||||||||||  ||||||||    | |||  |||||||||||| |||||| ||||    
T  32361317 taaattgaaaacattttcaactttaaataacttatgtatgaccaaaataacttaagggactaatttgttacaaacttcaaacttaaataacttatgtgtg 32361218  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    || |||||||||||||  ||||| |||||| |||| ||||| ||||||    
T  32361217 accaaaataacttaaatgatcaatctattacaaacttcaaatttaaag 32361170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 224
Target Start/End: Complemental strand, 35461591 - 35461420
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgactta 152  Q
    ||||| ||||| |||||| |||||||||||||| || |||| ||| | |||||||| ||||| ||| |||    || |||  ||||||||| | ||||||    
T  35461591 aaggactaaatcgaaaacttttacaaacttaaaggacttatttgtgatcaaaataatttaaaggaccaatctgttacaaacttcaaacttacaggactta 35461492  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    | |||||| |||||||||||||  | |||  ||||| ||||||||||||||||| |||| || | |||||||    
T  35461491 tgtgtgaccaaaataacttaaaggaccaatatattacaaacctcaaacttaaaggacccgtggtgtaattta 35461420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 127
Target Start/End: Complemental strand, 33491714 - 33491597
Alignment:
Q  11 acgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaa 109  Q
    |||||||| |||||||  |||| ||| | |||||||||||| |||| ||||| |||||||||||  |||||||| ||||| || |||| ||| | |||||    
T  33491714 acgttttcaatttagttcttctgttaaccaaaaagatgatgcggcagaaggactaaattgaaaatttttacaaagttaaaggacttatctgtgatcaaaa 33491615  T
Q  110 taacttaaatgactaatt 127  Q
    ||||||||| ||||||||    
T  33491614 taacttaaaggactaatt 33491597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 34 - 115
Target Start/End: Original strand, 38682764 - 38682845
Alignment:
Q  34 ttacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataactt 115  Q
    ||||||||| ||| || ||||| || || ||||| |||||  ||||||||||||||||| ||||||||||||||||||||||    
T  38682764 ttacaaaaacgataatatggcagaaagactaaatcgaaaatgtttacaaacttaaaagacttatgtgtaaccaaaataactt 38682845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 174
Target Start/End: Complemental strand, 5746262 - 5746129
Alignment:
Q  45 atgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaac 140  Q
    ||||||||| | ||| | |||||  ||||| |||||||||||||| || |||||| | |||||||||||||||||||| ||    |||||||  |||||     
T  5746262 atgatgtggtagaagaactaaataaaaaacgtttacaaacttaaaggacttatgttttaccaaaataacttaaatgaccaatctgttataaacctcaaat 5746163  T
Q  141 ttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    |||||  |||||| |||||| |||||||||||||    
T  5746162 ttaaagaacttatgtgtgaccaaaataacttaaa 5746129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 35813459 - 35813542
Alignment:
Q  35 tacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||| |||||||||| | ||| | |||||||||||||||||||| |||||| || |||||| | | ||||||||||||||    
T  35813459 tacaaaaacgatgatgtggtagaagaactaaattgaaaacatttacaatcttaaatgacttatgtatgagcaaaataacttaaa 35813542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 4943110 - 4942992
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| ||||| ||||| |||||||  |||||||| | |||| ||||||||| |||||||| |||||| ||||  |||||||||||||| || ||||||    
T  4943110 aagtttgtaaacattttcaatttagtcattctattaaccaaaacgatgatgtgtcaaaaggactaaattaaaaatgtttacaaacttaaaggacttatgt 4943011  T
Q  100 gtaaccaaaataacttaaa 118  Q
     | | |||||||| |||||    
T  4943010 atgatcaaaataatttaaa 4942992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 20181518 - 20181432
Alignment:
Q  35 tacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    |||| ||| ||||||||| || |||||  |||||||||||||||||||||||||| || |||| | | ||||||||||| |||||||    
T  20181518 tacagaaatgatgatgtgacagaaggacaaaattgaaaacatttacaaacttaaatgacttatatttgaccaaaataacataaatga 20181432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 125 - 206
Target Start/End: Complemental strand, 40980794 - 40980713
Alignment:
Q  125 attataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||| |||| |||||||||||  |||||| |||||  |||||||||||||  ||||| |||||| |||||||||||||||||    
T  40980794 attacaaatttcaaacttaaagtacttatgtgtgatcaaaataacttaaatgatcaatctattacaaacctcaaacttaaag 40980713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 23662057 - 23662214
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatg-actaa----ttataaatatcaaacttaaatga 148  Q
    |||||||| |||||||||||| ||||||||||| || || ||||||   || ||||||||||||| | || ||    ||| |||| |||||||||||  |    
T  23662057 caaaaggactaaattgaaaacttttacaaacttgaaggagttatgtacgacaaaaataacttaaaagaaccaatttgttacaaatctcaaacttaaagaa 23662156  T
Q  149 cttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||| ||| || |||||||||||||  | |||  ||||| |||||||||||||||||    
T  23662157 cttatgtgtaaccaaaataacttaaaggaccaatttattacaaacctcaaacttaaag 23662214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 7210253 - 7210308
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||| ||||| |||||||||||||| || ||||||| |||||||||||||||||    
T  7210253 taaatttaaaacgtttacaaacttaaatgacttatgtgcaaccaaaataacttaaa 7210308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 35188049 - 35187994
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||| ||||  |||||||||||||| ||||||||||| ||||||||||||||||    
T  35188049 taaattaaaaatgtttacaaacttaaatgatttatgtgtgaccaaaataacttaaa 35187994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 119
Target Start/End: Original strand, 36760780 - 36760842
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaat 119  Q
    ||||| |||||||||||  |||||||||| |||||| |||||||| ||| |||||||||||||    
T  36760780 aaggactaaattgaaaatgtttacaaactaaaaagacttatgtgtgaccgaaataacttaaat 36760842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 176
Target Start/End: Original strand, 37032953 - 37033003
Alignment:
Q  126 ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaac 176  Q
    ||||||||||||||||| || ||||||| |||||| |||||||||||||||    
T  37032953 ttataaatatcaaacttgaaggacttatgtgtgaccaaaataacttaaaac 37033003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 37642943 - 37642885
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    ||||| |||||| |||||||||||||| ||||||| ||  |||||||||||||||||||    
T  37642943 taaatcgaaaacgtttacaaacttaaaggatttatttgagaccaaaataacttaaatga 37642885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 174
Target Start/End: Original strand, 4943087 - 4943204
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaag-atttatgtgtaaccaaaataacttaaatgactaa-----ttataaatatcaaacttaaatgacttatatg 156  Q
    |||||||||||  |||||||||||||||| | |||||||| |||||||||||||||| |  | |     |||||||| ||||||||||| ||||||| ||    
T  4943087 taaattgaaaatgtttacaaacttaaaagaacttatgtgtgaccaaaataacttaaaaggatcaatctgttataaatttcaaacttaaaggacttatgtg 4943186  T
Q  157 tgacaaaaataacttaaa 174  Q
    |||  ||||||| |||||    
T  4943187 tgatcaaaataatttaaa 4943204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 20181473 - 20181404
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    |||||||||||||||||||| |||| |||||||| ||||  ||||| |||||| || ||||||| |||||    
T  20181473 caaacttaaatgacttatatttgaccaaaataacataaatgatcaatctattacaaccctcaaatttaaa 20181404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 28022173 - 28022226
Alignment:
Q  156 gtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    ||||| |||||||||||||  |||||  ||||||||||||||||||||||||||    
T  28022173 gtgaccaaaataacttaaatgatcaatttattataaacctcaaacttaaagaac 28022226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 28559442 - 28559511
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||| ||||||| |||||| ||||||| |||||  | ||| || |||||||||||||||||||||    
T  28559442 aaacttaaaggacttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaaacttaaag 28559511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 206
Target Start/End: Complemental strand, 25456405 - 25456337
Alignment:
Q  138 aacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||||| ||||||| |||||| |||||||||||||  | ||| || ||| |||||||||||||||||    
T  25456405 aacttaaaagacttatttgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaag 25456337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Original strand, 38682810 - 38682878
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaa 204  Q
    |||||||||| ||||||| ||| || |||||||||| ||  ||||| |||||| |||||||||||||||    
T  38682810 caaacttaaaagacttatgtgtaaccaaaataactttaaggatcaatctattacaaacctcaaacttaa 38682878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 14604198 - 14604127
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaa-catcaaactattataaacctcaaacttaaag 206  Q
    |||| ||||| |||||||||||||| |||||||| |||||  ||||| || ||| |||||||||||||||||    
T  14604198 caaatttaaaggacttatatgtgaccaaaataacataaaatgatcaatctgttacaaacctcaaacttaaag 14604127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 203
Target Start/End: Complemental strand, 17400693 - 17400550
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt----ataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||| ||| ||| |||||| || |||||||  | ||||| |||||||| ||| ||||    | |||| ||||||||||| ||||||| ||||    
T  17400693 taaattgaaaacgtttgcaaccttaaaggacttatgtgagatcaaaagaacttaaaggaccaatttgttacaaatttcaaacttaaaagacttatgtgtg 17400594  T
Q  159 acaaaaataacttaaaacatcaaactattataaacctcaaactta 203  Q
    || |||||||||||||  | |||  ||||| | ||||||||||||    
T  17400593 ac-aaaataacttaaagaaccaatttattacacacctcaaactta 17400550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 45 - 174
Target Start/End: Original strand, 17400715 - 17400850
Alignment:
Q  45 atgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagattta--tgtgtaaccaaaataacttaaatgactaa----ttataaatatcaa 138  Q
    ||||||||| | ||||| |||||||||||| |||||||| ||||| || |||  ||||| ||||||| |||||| | ||| ||    ||| |||  ||||    
T  17400715 atgatgtggtagaaggactaaattgaaaacgtttacaaatttaaaggacttatgtgtgtgaccaaaacaacttacaggaccaatctgttacaaaactcaa 17400814  T
Q  139 acttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    ||||||| ||||||| |||||  |||||||||||||    
T  17400815 acttaaaggacttatgtgtgatcaaaataacttaaa 17400850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 167
Target Start/End: Original strand, 28559424 - 28559532
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtg 158  Q
    |||||||||||| |||| ||||||||| || |||||||| || ||||||| ||||| ||| ||    |||||||  ||||||||||| ||||| | ||||    
T  28559424 taaattgaaaacgtttataaacttaaaggacttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaaacttaaaggacttgtgtgtg 28559523  T
Q  159 acaaaaata 167  Q
    || ||||||    
T  28559524 accaaaata 28559532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 126
Target Start/End: Original strand, 35813566 - 35813609
Alignment:
Q  83 acttaaaagatttatgtgtaaccaaaataacttaaatgactaat 126  Q
    ||||||| || |||||||||||||||||||||||||| ||||||    
T  35813566 acttaaaggacttatgtgtaaccaaaataacttaaataactaat 35813609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 36759752 - 36759697
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||||||||||||||||||| || ||||  || |||||||||| |||||    
T  36759752 taaattgaaaacatttacaaacttaaaggacttataagtgaccaaaataatttaaa 36759697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 12713096 - 12712994
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| ||||||||||| |||||||  |||| ||| | |||| |||||||||  | ||||| |||||||||||| |||||||  ||||| || ||||||    
T  12713096 aagtttgtaaacgttttcaatttagtcattctgttaaccaaaacgatgatgtgatagaaggactaaattgaaaacttttacaattttaaaggacttatgt 12712997  T
Q  100 gta 102  Q
    |||    
T  12712996 gta 12712994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 12774360 - 12774258
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| ||||||||||| |||||||  |||| ||| | |||| |||||||||  | ||||| |||||||||||| |||||||  ||||| || ||||||    
T  12774360 aagtttgtaaacgttttcaatttagtcattctgttaaccaaaacgatgatgtgatagaaggactaaattgaaaacttttacaattttaaaggacttatgt 12774261  T
Q  100 gta 102  Q
    |||    
T  12774260 gta 12774258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #46
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Complemental strand, 19550171 - 19550133
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  19550171 caaacttaaaagacttatgtgtcaccaaaataacttaaa 19550133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #47
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Original strand, 20928080 - 20928150
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||| ||||||| |||||| |||||||||||||  |  || || |||||||||||||| |||||    
T  20928080 tcaaacttaaaggacttatgtgtgaccaaaataacttaaaggacaaatctgttataaacctcaaagttaaa 20928150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #48
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 35813434 - 35813380
Alignment:
Q  66 attgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatg 120  Q
    ||||||||| |||||||||||||| || |||||||| || ||||||||| |||||    
T  35813434 attgaaaacgtttacaaacttaaaggacttatgtgtgactaaaataactaaaatg 35813380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #49
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 5746227 - 5746154
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    |||||||||| ||||||| | | || |||||||||||||  | ||| || |||||||||||||| |||||||||    
T  5746227 caaacttaaaggacttatgttttaccaaaataacttaaatgaccaatctgttataaacctcaaatttaaagaac 5746154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #50
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 171
Target Start/End: Original strand, 28022107 - 28022248
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatg----actaatta 128  Q
    |||||||||| ||| | ||||||||| || ||||| |||||  |||||||| ||||| |  ||||| || ||||||||||||||||||    | | ||||    
T  28022107 attacaaaaacgataa-gtggcaaaatgattaaatcgaaaatgtttacaaatttaaagggcttatgcgtgaccaaaataacttaaatgatcaatttatta 28022205  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataactt 171  Q
    ||||  |||||||||||  |||||| |||||| || |||||||    
T  28022206 taaacctcaaacttaaagaacttatgtgtgaccaagataactt 28022248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #51
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 127
Target Start/End: Original strand, 5746295 - 5746359
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt 127  Q
    |||||| ||||| |||||||||||||| || |||||| | |||||||||| ||||| || |||||    
T  5746295 taaattaaaaacgtttacaaacttaaatgacttatgtatgaccaaaataatttaaaagattaatt 5746359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #52
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 116
Target Start/End: Complemental strand, 10827179 - 10827143
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataactta 116  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  10827179 caaacttaaaagacttatgtgtgaccaaaataactta 10827143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #53
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 228
Target Start/End: Complemental strand, 12712480 - 12712402
Alignment:
Q  148 acttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    |||||| |||||  |||||||||||||| ||||| |||||| |||| ||||||||||| |||| ||| | |||||||||||    
T  12712480 acttatgtgtgatcaaaataacttaaaa-atcaatctattacaaacatcaaacttaaa-aacctctgctgtaatttaacct 12712402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #54
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 153
Target Start/End: Original strand, 17400812 - 17400889
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttat 153  Q
    |||||||||| || |||||||| | |||||||||||||||||| ||    ||| |||| ||||||||||| |||||||    
T  17400812 caaacttaaaggacttatgtgtgatcaaaataacttaaatgaccaatatgttacaaatctcaaacttaaaggacttat 17400889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 54 - 224
Target Start/End: Complemental strand, 17137002 - 17136828
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgac 149  Q
    |||||||| |||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||  | |||    ||| |||  |||||||||||||||    
T  17137002 caaaaggactaaattgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaagaattaatctgttacaaacctcaaacttaaatgac 17136903  T
Q  150 ttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    |||| || ||| |||||||||||||  |  || |||||| |||||||||| |||||| ||| ||| | |||||||    
T  17136902 ttatgtgagaccaaaataacttaaaggactaatctattacaaacctcaaatttaaaggacctctggtgtaattta 17136828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 224
Target Start/End: Original strand, 21598628 - 21598799
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| |||||||||||| |||||||||||||| || |||||||| |||||||||||||||| ||| ||    ||| |||   |||||||||| ||||||    
T  21598628 aaggactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaaccacaaacttaaaggactta 21598727  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    | || ||  |||||||||||||  | ||| || ||| ||||||||||||||||| ||||||| | |||||||    
T  21598728 tgtgagaacaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacccctgatgtaattta 21598799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 42 - 126
Target Start/End: Complemental strand, 35050706 - 35050622
Alignment:
Q  42 aagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat 126  Q
    |||||||||||||| ||||| ||||| |||||| |||| ||||||||||||||||||||| || ||||||||||||| |||||||    
T  35050706 aagatgatgtggcagaaggactaaatcgaaaacgtttataaacttaaaagatttatgtgtgacaaaaataacttaaaggactaat 35050622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 233
Target Start/End: Original strand, 17342605 - 17342802
Alignment:
Q  39 aaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaata 134  Q
    |||| ||||||||| || || || |||||||||||| |||||||||||||| || |||||||| ||| |||||||||||| ||| ||    ||| |||      
T  17342605 aaaatgatgatgtgtcagaatgactaaattgaaaacgtttacaaacttaaaggacttatgtgtgaccgaaataacttaaaggaccaacatgttacaaacc 17342704  T
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaaccttaatt 233  Q
    ||||||||||| ||||||| | | || |||||||||||||  | |||  | ||| ||||||||||||||||| |||| | || ||||||||||| ||||    
T  17342705 tcaaacttaaaagacttatgtattaccaaaataacttaaaggaccaacatgttacaaacctcaaacttaaag-acccattttgtaatttaacctaaatt 17342802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 34 - 118
Target Start/End: Original strand, 364155 - 364241
Alignment:
Q  34 ttacaaaaaagatgatgtggcaaaaggaataaattgaaaacattt--acaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||| |||||||||||| ||||| ||||| ||||| ||||  |||||||||||||| |||||||| ||||||||||||||||    
T  364155 ttacaaaaatgatgatgtggcataaggactaaatcgaaaatatttttacaaacttaaaagacttatgtgtgaccaaaataacttaaa 364241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 21598657 - 21598442
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| ||||||||||| |||||||  || | ||| | ||| | ||||||||| | ||||| ||||| |||||| |||| ||||||||| || ||||||    
T  21598657 aagtttgtaaacgttttcaatttagtccttatgttaaccaaacatatgatgtggtagaaggactaaatcgaaaacgtttataaacttaaaggacttatgt 21598558  T
Q  100 gtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacct 195  Q
    |  | |||||||||||||| ||| |||    || |||  ||||||||||| ||||||| ||  || |||||||||||||  | ||| || ||||||||||    
T  21598557 gggatcaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggacttatgtgcaaccaaaataacttaaaggaccaatctgttataaacct 21598458  T
Q  196 caaacttaaagaaccc 211  Q
    ||||||||||| ||||    
T  21598457 caaacttaaaggaccc 21598442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 205
Target Start/End: Complemental strand, 9982843 - 9982673
Alignment:
Q  39 aaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaata 134  Q
    |||| ||||||||| || ||||| |||||||||||| ||||||||||||||||| |||||||  |||||||||||| ||| ||  ||    ||| |||      
T  9982843 aaaacgatgatgtgacagaaggactaaattgaaaacgtttacaaacttaaaagacttatgtgcgaccaaaataactcaaaggatcaatctgttacaaaac 9982744  T
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||| ||||||| |||||  ||||||| |||||  || ||  | ||| ||||||||||||||||    
T  9982743 tcaaacttaaaggacttatgtgtgatcaaaataatttaaaggatgaatatgttacaaacctcaaacttaaa 9982673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 35225577 - 35225393
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----tta 128  Q
    |||||||||| |||||||||||| ||||  ||||| |||||| ||||||||||||||  | |||||||| | || ||||||||||| ||| ||    |||    
T  35225577 attacaaaaatgatgatgtggcagaaggcctaaatcgaaaacgtttacaaacttaaagaacttatgtgtgatcagaataacttaaaggaccaatctgtta 35225478  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccct 213  Q
     |||  | ||||||||| || |||| | |||| |||||||||||||  | |||  | ||| ||||||||||||||||| ||||||    
T  35225477 caaaccttaaacttaaaggatttatgtatgaccaaaataacttaaaggaccaatttgttacaaacctcaaacttaaaggacccct 35225393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 2761613 - 2761495
Alignment:
Q  1 aagtttataaacgttttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgt 99  Q
    |||||| ||||||||||| |||||||  |||| ||| | | || |||| |||| || ||||| |||||||||||| |||||||||||||| || ||||||    
T  2761613 aagtttgtaaacgttttcaatttagtccttctgttaaccagaacgatgttgtgtcagaaggactaaattgaaaacgtttacaaacttaaaggacttatgt 2761514  T
Q  100 gtaaccaaaataacttaaa 118  Q
    || | ||||||||||||||    
T  2761513 gtgatcaaaataacttaaa 2761495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 10356444 - 10356597
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| |||||||||||  |||||||||||||| || ||||||||  | ||||||||||||| ||| ||    ||| |||| ||||||||||| ||||||    
T  10356444 aaggattaaattgaaaagttttacaaacttaaaggacttatgtgtggcaaaaataacttaaaagaccaatctgttacaaatctcaaacttaaaggactta 10356543  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    | ||| || |||||||| ||||  | ||| || ||| |||| ||||||||||||    
T  10356544 tgtgttaccaaaataacctaaaggaccaatctgttacaaacgtcaaacttaaag 10356597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 17342595 - 17342531
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    ||||| ||||||||||||| ||||||||||||| || |||||||| ||| |||||||||||||||    
T  17342595 aaggactaaattgaaaacacttacaaacttaaaggacttatgtgtgaccgaaataacttaaatga 17342531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 80 - 228
Target Start/End: Complemental strand, 10356393 - 10356241
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaa 175  Q
    |||||||||| || ||| |||| ||||||||||||||||  || |||    || |||||||||||||||| ||||||| |||||| ||||||| |||||     
T  10356393 caaacttaaaggacttaagtgtgaccaaaataacttaaagaaccaatctgttacaaatatcaaacttaaaggacttatgtgtgaccaaaataatttaaag 10356294  T
Q  176 catcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
     |  ||  | ||| ||||||||||||||||| ||||||  | |||||||||||    
T  10356293 gactaatttgttacaaacctcaaacttaaaggacccctagtgtaatttaacct 10356241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 2761584 - 2761654
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt 127  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||| | ||||||||| |||| ||| ||||    
T  2761584 aaggactaaattgaaaacgtttacaaacttaaaggatttatgtgtgatcaaaataacctaaaagaccaatt 2761654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 63 - 228
Target Start/End: Complemental strand, 13273214 - 13273048
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa-ttataaatatcaaacttaaatgacttatatgtgaca 161  Q
    |||||||||||  ||||||||||||||  | |||||||  |||||||||||| |||| | |   |||||||  |||||||||||  |||||| | ||||     
T  13273214 taaattgaaaatgtttacaaacttaaataacttatgtgggaccaaaataactaaaatcaatctgttataaacctcaaacttaaagaacttatgtatgacc 13273115  T
Q  162 aaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    ||||||| | |||| | ||| |||||| |||| |||||||||||| ||| ||| | |||||||||||    
T  13273114 aaaataattcaaaagaccaatctattacaaacatcaaacttaaaggacctctggtgtaatttaacct 13273048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 211
Target Start/End: Complemental strand, 24059820 - 24059664
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| || ||| ||||| |||||||||||||| || |||||||| |||||||||| ||||||||  ||    |||||||  ||||||||||| ||||||    
T  24059820 aaggactagattaaaaacgtttacaaacttaaaggacttatgtgtgaccaaaataatttaaatgatcaatctgttataaacctcaaacttaaaggactta 24059721  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
    | || | | ||| |||||||||  |||||  | ||| ||||||||||||||||| ||||    
T  24059720 tgtggggccaaagtaacttaaa--atcaatatgttacaaacctcaaacttaaaggaccc 24059664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 206
Target Start/End: Original strand, 3895669 - 3895819
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgactta 152  Q
    ||||| |||||||||||| |||| ||  |||| |||||||||||| |  ||||||||||||||||||||    ||| |||| | | | ||||| ||||||    
T  3895669 aaggattaaattgaaaacgtttataat-ttaagagatttatgtgtgattaaaataacttaaatgactaatttgttacaaattttatatttaaaagactta 3895767  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    | ||||||   |||||||||||| || || |||||| |||||||||||||||||    
T  3895768 tgtgtgac--caataacttaaaaaattaatctattacaaacctcaaacttaaag 3895819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 54 - 122
Target Start/End: Complemental strand, 3848646 - 3848578
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgac 122  Q
    |||||||| |||||||||| | |||||||||||||| |  |||| ||||| |||| |||||||||||||    
T  3848646 caaaaggactaaattgaaaccgtttacaaacttaaaggtattatatgtaagcaaactaacttaaatgac 3848578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 121
Target Start/End: Original strand, 35225588 - 35225655
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    |||||||| ||||||||| || |||||||||||| | || |||||||| || ||||||||| ||||||    
T  35225588 caaaaggactaaattgaatacgtttacaaacttataggaattatgtgtgacaaaaataactcaaatga 35225655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 211
Target Start/End: Original strand, 9982936 - 9983010
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
    ||||||||| ||||||| |||||| |||||||||||||  |||||  | ||| || |||||||||||||| ||||    
T  9982936 aaacttaaaggacttatgtgtgaccaaaataacttaaaggatcaatttgttacaatcctcaaacttaaaggaccc 9983010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 10356404 - 10356355
Alignment:
Q  125 attataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    |||| |||||||||||||||| ||||||  |||||| |||||||||||||    
T  10356404 attacaaatatcaaacttaaaggacttaagtgtgaccaaaataacttaaa 10356355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 45 - 151
Target Start/End: Complemental strand, 13812351 - 13812241
Alignment:
Q  45 atgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaac 140  Q
    ||||||| ||| || || ||||| ||||||||||||||| ||||| || |||||||| | |||||||| ||| |  |||||    |||||||  ||||||    
T  13812351 atgatgttgcagaatgactaaatcgaaaacatttacaaatttaaatgacttatgtgttaacaaaataatttatagaactaatttgttataaacctcaaac 13812252  T
Q  141 ttaaatgactt 151  Q
    |||||||||||    
T  13812251 ttaaatgactt 13812241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 35050847 - 35050916
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||| |||||||  |||||  ||||||||||||  |||||  ||||| |||||||||||||||||    
T  35050847 aaacttaaaggacttatgcgtgacctaaataacttaaaggatcaatttattacaaacctcaaacttaaag 35050916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 3e-26; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 57 - 213
Target Start/End: Complemental strand, 5009318 - 5009153
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa--------ttataaatatcaaacttaaatga 148  Q
    ||||| |||||||||||||||||||||| ||||||| |||||||| | |||||||||||||||||| ||        ||| |||   |||||||||||||    
T  5009318 aaggactaaattgaaaacatttacaaacataaaagacttatgtgtgatcaaaataacttaaatgacaaattaatctgttacaaaccacaaacttaaatga 5009219  T
Q  149 cttatatgtgacaaaaataacttaaaa-catcaaactattataaacctcaaacttaaagaacccct 213  Q
    ||||| |||||  ||||||||||||||  | ||| |||||| ||||||||||||||||||||||||    
T  5009218 cttatgtgtgaacaaaataacttaaaaggaccaatctattacaaacctcaaacttaaagaacccct 5009153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 34 - 212
Target Start/End: Complemental strand, 31630243 - 31630063
Alignment:
Q  34 ttacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttat 129  Q
    ||||||||| |||||||||||| ||||| ||||| |||||| ||||||||||||||||| |||||||| |||||||||||||||| ||  ||    |||     
T  31630243 ttacaaaaacgatgatgtggcagaaggactaaatcgaaaacgtttacaaacttaaaagacttatgtgtgaccaaaataacttaaaggatcaatctgttac 31630144  T
Q  130 aaatatcaaacttaaatgacttatatgtgacaaaaataactta-aaacatcaaactattataaacctcaaacttaaagaacccc 212  Q
    |||  ||||||||||| ||||||  |||||| ||||||| ||| |||||  || |||||| ||||||||||||||||| |||||    
T  31630143 aaacctcaaacttaaa-gacttaggtgtgaccaaaataatttataaaca--aatctattacaaacctcaaacttaaaggacccc 31630063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 4511567 - 4511396
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaattat--- 129  Q
    |||||||||| |||||||||||| ||||| ||||| |||||  |||||||||||||| || |||||||||||||||||||| |||| ||| |||| |       
T  4511567 attacaaaaacgatgatgtggcagaaggattaaatcgaaaatgtttacaaacttaaatgacttatgtgtaaccaaaataacataaacgaccaattgttac 4511468  T
Q  130 aaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaact 201  Q
    |||  ||||| ||||||||||| | ||| || || ||||||||||  | ||| |||||| ||||||||||||    
T  4511467 aaacctcaaatttaaatgacttgtgtgtaaccaatataacttaaatgaccaatctattacaaacctcaaact 4511396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 211
Target Start/End: Original strand, 5009332 - 5009512
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----tta 128  Q
    |||||||||| |||||||||||| ||| | |||||||||||| |||||||||||||| || |||||||| || ||||||||||||| ||  ||    |||    
T  5009332 attacaaaaacgatgatgtggcagaagaactaaattgaaaacgtttacaaacttaaagga-ttatgtgtgacaaaaataacttaaaggatcaatatgtta 5009430  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaaccc 211  Q
     |||  |||||||||||  |||||| ||||||||||| ||||||||| | |||  | ||| ||||||||||||||||| ||||    
T  5009431 caaacctcaaacttaaagtacttatgtgtgacaaaaa-aacttaaaagaccaatatgttacaaacctcaaacttaaaggaccc 5009512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 54 - 209
Target Start/End: Original strand, 31630255 - 31630412
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat-tataaata---tcaaacttaaatgac 149  Q
    ||||| || |||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||  || ||| ||| | ||   ||||| ||||| |||    
T  31630255 caaaatgactaaattgaaaacatttacaaactt-aaagacttatgtgtgaccaaaataacttaaa-aaccaatctattactaacctcaaatttaaaggac 31630352  T
Q  150 ttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    || | |||||| |||||||||||||  ||||| ||  |||||||||||||||||||||||    
T  31630353 ttttgtgtgaccaaaataacttaaatgatcaatcttctataaacctcaaacttaaagaac 31630412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 36694511 - 36694406
Alignment:
Q  15 tttcgatttagtatttctatta-caaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaa-gatttatgtgtaaccaaaataa 112  Q
    |||| ||||||| ||||| ||| | |||| |||||||||||| ||||| ||||||||||| |||||||||||||||| || |||| ||| ||||||||||    
T  36694511 tttcaatttagtctttctgttaaccaaaatgatgatgtggcagaaggactaaattgaaaatatttacaaacttaaaaggacttatatgtgaccaaaataa 36694412  T
Q  113 cttaaa 118  Q
    ||||||    
T  36694411 cttaaa 36694406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 39442383 - 39442268
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt----ataaatatcaaacttaaatgacttatatgtg 158  Q
    ||||||||| || |||||||||||||| || |||  |||||||||| ||| ||||||||  ||||    | |||| ||||||||||||||||||| ||||    
T  39442383 taaattgaatacctttacaaacttaaatgacttacatgtaaccaaagtaaattaaatgatcaatttgttacaaatctcaaacttaaatgacttatgtgtg 39442284  T
Q  159 acaaaaataacttaaa 174  Q
    |||||||||| |||||    
T  39442283 acaaaaataatttaaa 39442268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 122
Target Start/End: Original strand, 11791778 - 11791846
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgac 122  Q
    ||||| || |||||||||||| |||||||||||| | || |||||||| ||||||||||||||||||||    
T  11791778 caaaatgactaaattgaaaacgtttacaaacttataggacttatgtgtgaccaaaataacttaaatgac 11791846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 6694164 - 6694117
Alignment:
Q  76 tttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgact 123  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||    
T  6694164 tttacaaacttaaaagatttatgtgtgatcaaaataacttaaatgact 6694117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 206
Target Start/End: Original strand, 25895095 - 25895251
Alignment:
Q  54 caaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgac 149  Q
    |||||||| |||||||||||| |||||||||| ||| || |||||||| || ||||||||||||| |   ||    ||| |||  | ||||||||| |||    
T  25895095 caaaaggactaaattgaaaacgtttacaaactgaaaggacttatgtgtgactaaaataacttaaaggttcaatctgttacaaaccttaaacttaaaggac 25895194  T
Q  150 ttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    || | |||||| |||||||||||||  | ||| || ||| |||||||||||||||||    
T  25895195 ttttgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaag 25895251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 3876906 - 3876821
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||| ||||||| |||| || || | |||||||||| |||||||||||||| || ||||||||| | |||||||| ||||    
T  3876906 attacaaaaacgatgatggggcagaatgacttaattgaaaacgtttacaaacttaaatgacttatgtgtagcaaaaataacataaa 3876821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 228
Target Start/End: Complemental strand, 9501067 - 9500885
Alignment:
Q  50 gtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa----tgactaattataaatatcaaacttaaa 145  Q
    |||||| ||||| ||||| |||||| |||||||||||||| || |||||||| || |||||||||||||     ||    ||| |||  ||||||||||     
T  9501067 gtggcagaaggactaaatcgaaaacgtttacaaacttaaaggacttatgtgtgactaaaataacttaaagaagcgatctgttacaaacctcaaacttaag 9500968  T
Q  146 tgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
     ||||||  |||||| |||||||||||||  | ||| || ||| | |||| |||||||||| ||||||| | |||||||||||    
T  9500967 ggacttaagtgtgaccaaaataacttaaaggaccaatctgttacagacctaaaacttaaaggacccctggtgtaatttaacct 9500885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 136 - 209
Target Start/End: Complemental strand, 12612518 - 12612445
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    |||||||||||||||||| |||||  ||||||| |||||| | ||| |||||| |||||| |||||||||||||    
T  12612518 caaacttaaatgacttatgtgtgatcaaaataatttaaaagaccaatctattacaaaccttaaacttaaagaac 12612445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 135 - 223
Target Start/End: Complemental strand, 44556598 - 44556510
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattt 223  Q
    ||||||||||| ||||||| ||||||||||| ||||||||  | ||| |||||| |||||| |||||||||| ||| ||| | ||||||    
T  44556598 tcaaacttaaaggacttatgtgtgacaaaaaaaacttaaatgaccaatctattacaaaccttaaacttaaaggacctctgatataattt 44556510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 3876949 - 3877016
Alignment:
Q  142 taaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaac 209  Q
    |||| ||||||| |||||| |||||||||||||| |||||  ||||| |||||||||| |||||||||    
T  3876949 taaaggacttatgtgtgaccaaaataacttaaaagatcaatttattacaaacctcaaatttaaagaac 3877016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 8035458 - 8035513
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||| ||||| ||||||||||||||| | |||||| ||||||||||||||||||    
T  8035458 taaattaaaaacgtttacaaacttaaaaaacttatgtataaccaaaataacttaaa 8035513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 12612535 - 12612480
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||||||||||||||||||| || |||||||| | |||||||| |||||    
T  12612535 taaattgaaaacatttacaaacttaaatgacttatgtgtgatcaaaataatttaaa 12612480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Complemental strand, 30265528 - 30265465
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat 126  Q
    |||||||||||| ||||||||||||||  | |||||||| || |||| ||||||||||||||||    
T  30265528 taaattgaaaacgtttacaaacttaaagcacttatgtgtgacaaaaagaacttaaatgactaat 30265465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 43699435 - 43699482
Alignment:
Q  71 aaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||||||||||||||| |||||||| |||||||||| |||||    
T  43699435 aaacatttacaaacttaaaagacttatgtgtgaccaaaataaattaaa 43699482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 127
Target Start/End: Complemental strand, 25895084 - 25894990
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt 127  Q
    |||||||||| |||||||||| | ||||| |||||  ||||  |||||||||||||| || |||| ||  |||||||||||||||| ||| ||||    
T  25895084 attacaaaaacgatgatgtggtagaaggactaaatcaaaaatgtttacaaacttaaaggacttatatgcgaccaaaataacttaaaggaccaatt 25894990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 4188714 - 4188657
Alignment:
Q  60 gaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaa 117  Q
    ||||||||||||||| |||| ||||||||| || || ||||| |||||||||||||||    
T  4188714 gaataaattgaaaacgtttagaaacttaaaggacttgtgtgtgaccaaaataacttaa 4188657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 36217207 - 36217276
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||||| ||||||| |||||| |||||||||||||  |||||  | ||| |||||||||||||||||    
T  36217207 tcaaacttaaaagacttatgtgtgaccaaaataacttaaa--atcaatttgttacaaacctcaaacttaaag 36217276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 228
Target Start/End: Original strand, 43699444 - 43699536
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacct 228  Q
    |||||||||| ||||||| |||||| ||||||| |||||  |||||  | ||| ||||||||||||||||| |||| |  | |||||||||||    
T  43699444 caaacttaaaagacttatgtgtgaccaaaataaattaaaggatcaatatgttacaaacctcaaacttaaaggacccattgtataatttaacct 43699536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 1316108 - 1316037
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||| |||| ||||||| |||||| |||||||||||||  ||| | |||||| |||||||||| ||||||    
T  1316108 tcaaacataaaggacttatgtgtgaccaaaataacttaaacgatctatctattacaaacctcaaatttaaag 1316037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 4511980 - 4511929
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactatt 187  Q
    |||||||||| |||||||||||||  |||||||||||||| ||||| |||||    
T  4511980 caaacttaaaggacttatatgtgatcaaaataacttaaaaaatcaatctatt 4511929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 39442420 - 39442474
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||||| |||||||| || |||||||| ||||| ||||||||||||||||    
T  39442420 taaattgaaaacgtttacaaa-ttcaaagatttgtgtgtgaccaaaataacttaaa 39442474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 36217208 - 36217246
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  36217208 caaacttaaaagacttatgtgtgaccaaaataacttaaa 36217246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 118
Target Start/End: Original strand, 14166371 - 14166432
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||| |||||||||||| |||| ||||||||| | ||||||||| | ||| ||||||||||    
T  14166371 aaggactaaattgaaaacgtttaaaaacttaaagggtttatgtgtgaacaagataacttaaa 14166432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 206
Target Start/End: Complemental strand, 44556656 - 44556587
Alignment:
Q  137 aaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||| ||||||| |||||  ||||||| |||||  |||||  ||||| |||||||||||||||||    
T  44556656 aaacttaaaggacttatgtgtgatcaaaataagttaaaggatcaatttattacaaacctcaaacttaaag 44556587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 101
Target Start/End: Complemental strand, 4511926 - 4511882
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgt 101  Q
    ||||| |||||| ||||| ||||||||||||||||| ||||||||    
T  4511926 aaggactaaattaaaaacgtttacaaacttaaaagacttatgtgt 4511882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 136 - 212
Target Start/End: Complemental strand, 25895037 - 25894961
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccc 212  Q
    |||||||||| |||||||||| ||| |||||||||||||  | |||  | ||| ||| ||||||||||||| |||||    
T  25895037 caaacttaaaggacttatatgcgaccaaaataacttaaaggaccaatttgttacaaatctcaaacttaaaggacccc 25894961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 12230 - 12377
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaat----tataaatatcaaacttaaatgactta 152  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||  | |||||||| ||||| ||| |||    || |||  |||||||||| |||||||    
T  12230 aaggactaaattgaaaacatttacaaatttaaaagatttatgtg--atcaaaataagttaaa-gaccaatctgttacaaacctcaaacttaattgactta 12326  T
Q  153 tatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    |||||||  |||||||||||||  ||||| |||||| ||||||||||||||||    
T  12327 tatgtgatcaaaataacttaaa--atcaatctattacaaacctcaaacttaaa 12377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 33 - 174
Target Start/End: Complemental strand, 52913319 - 52913173
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa-----tt 127  Q
    |||||||||| |||||||||||| || || ||||| |||||| |||||||||||||| || |||||||| || | ||||||||||| ||| ||     ||    
T  52913319 attacaaaaacgatgatgtggcagaatgactaaatcgaaaacgtttacaaacttaaaggacttatgtgtgactagaataacttaaaggaccaatctgttt 52913220  T
Q  128 ataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    | |||  ||||||||||| ||||||| |||||| |||||||||||||    
T  52913219 acaaacctcaaacttaaaggacttatgtgtgaccaaaataacttaaa 52913173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 2633324 - 2633236
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga 121  Q
    |||||||||| |||||||| | | || || ||||| |||||  |||||||||||||| |||||||||||||||||||||||||||||||    
T  2633324 attacaaaaacgatgatgtagtagaatgactaaatcgaaaatgtttacaaacttaaatgatttatgtgtaaccaaaataacttaaatga 2633236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 80 - 205
Target Start/End: Complemental strand, 7490031 - 7489902
Alignment:
Q  80 caaacttaaaagatttatgtgtaaccaaaataacttaaatgactaa----ttataaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaa 175  Q
    |||||||||| ||||||||||| ||||||||||||||||||| |||    ||| |||  ||||||||||| ||||||| |||||| ||||||| |||||     
T  7490031 caaacttaaaggatttatgtgtgaccaaaataacttaaatgattaatctgttacaaacctcaaacttaaaggacttatgtgtgactaaaataatttaaat 7489932  T
Q  176 catcaaactattataaacctcaaacttaaa 205  Q
     ||||| || | | ||||||||||||||||    
T  7489931 gatcaatctctcacaaacctcaaacttaaa 7489902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 33 - 207
Target Start/End: Complemental strand, 18981169 - 18980992
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatg----actaatta 128  Q
    |||||||||| ||| |||||| | || ||  |||| |||||  |||||||||||||| || |||||||| |||||||||||||| |||    | | ||||    
T  18981169 attacaaaaatgataatgtggtagaaagacgaaatcgaaaatgtttacaaacttaaaggacttatgtgtgaccaaaataacttatatgatcaatttatta 18981070  T
Q  129 taaatatcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaaga 207  Q
    ||||  | ||||||||| ||||||  |||||| ||||||| ||||||  |||| |||||| ||||||||||||||||||    
T  18981069 taaaacttaaacttaaa-gacttaggtgtgaccaaaataatttaaaaggtcaatctattaaaaacctcaaacttaaaga 18980992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 26879665 - 26879759
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaatttaacctt 229  Q
    ||||||||||| ||||||| ||||| ||||||||||||||  | ||| || ||| ||||||||||||||||| ||| ||| | ||||||||||||    
T  26879665 tcaaacttaaaagacttatgtgtgataaaaataacttaaatgaccaatctgttacaaacctcaaacttaaaggacctctggtataatttaacctt 26879759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 1173189 - 1173105
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||| |||||||||||| || || ||||| |||||  ||||||||||| ||||| |||||||| ||||||||||||||||    
T  1173189 attacaaaaacgatgatgtggcagaatgactaaatcgaaaatgtttacaaactt-aaagacttatgtgtgaccaaaataacttaaa 1173105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 18608733 - 18608672
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    ||||| ||||||||||||||||||||||||||| || ||| |||| ||||||||||||||||    
T  18608733 aaggactaaattgaaaacatttacaaacttaaaggacttaagtgtgaccaaaataacttaaa 18608672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 136 - 224
Target Start/End: Complemental strand, 33650470 - 33650382
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaagaacccctgttctaattta 224  Q
    |||||||||||||||||| || ||  |||||||||||||  | ||| || ||||||||||||||||||||| ||||||| | |||||||    
T  33650470 caaacttaaatgacttatgtgggaacaaaataacttaaaggaccaatctgttataaacctcaaacttaaaggacccctggtgtaattta 33650382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 206
Target Start/End: Complemental strand, 18608710 - 18608640
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    |||||||||| ||||||  |||||| |||||||||||||  ||||| || ||| |||||||||||||||||    
T  18608710 caaacttaaaggacttaagtgtgaccaaaataacttaaagaatcaatctgttacaaacctcaaacttaaag 18608640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 33650570 - 33650644
Alignment:
Q  45 atgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaa-gatttatgtgtaaccaaaataacttaaa 118  Q
    ||||||||||| ||||| |||||  ||||| ||||||||||||||| || |||||||  ||||||||||||||||    
T  33650570 atgatgtggcagaaggactaaatcaaaaacgtttacaaacttaaaaggacttatgtgagaccaaaataacttaaa 33650644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 26879573 - 26879524
Alignment:
Q  39 aaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaa 88  Q
    |||| |||||||||||| ||||| |||||||||||| |||||||||||||    
T  26879573 aaaacgatgatgtggcataaggattaaattgaaaacgtttacaaacttaa 26879524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 7490032 - 7489961
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaag 206  Q
    ||||||||||| || |||| |||||| |||||||||||||  || || || ||| |||||||||||||||||    
T  7490032 tcaaacttaaaggatttatgtgtgaccaaaataacttaaatgattaatctgttacaaacctcaaacttaaag 7489961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 174
Target Start/End: Complemental strand, 38698998 - 38698887
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaattataaatatcaaacttaaatgacttatatgtgacaa 162  Q
    |||||||||||| |||||||| |||||||| |  ||||| |||||||||||||||   | |  ||| |||| ||||| |||||  |||||||||| || |    
T  38698998 taaattgaaaacgtttacaaatttaaaagactcgtgtgtgaccaaaataacttaaccaatttgttacaaatctcaaagttaaacaacttatatgttacca 38698899  T
Q  163 aaataacttaaa 174  Q
    ||||||| ||||    
T  38698898 aaataacgtaaa 38698887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 41007461 - 41007516
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaa 118  Q
    |||||||||||| ||||||||||||||||| |||| ||| |||||| ||| |||||    
T  41007461 taaattgaaaacgtttacaaacttaaaagacttatatgtgaccaaattaatttaaa 41007516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 80 - 126
Target Start/End: Complemental strand, 52913104 - 52913057
Alignment:
Q  80 caaacttaaaag-atttatgtgtaaccaaaataacttaaatgactaat 126  Q
    |||||||||||| |||||||||| |||||||||||||||| |||||||    
T  52913104 caaacttaaaaggatttatgtgtgaccaaaataacttaaaggactaat 52913057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 36956431 - 36956361
Alignment:
Q  44 gatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataact 114  Q
    ||||||||| |||||||  |||||  |||||||||||||||||| | |  |||||||| ||||||||||||    
T  36956431 gatgatgtgacaaaagggctaaatcaaaaacatttacaaacttatatggcttatgtgtgaccaaaataact 36956361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 52913333 - 52913403
Alignment:
Q  57 aaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgactaatt 127  Q
    ||||| ||||| |||||| |||||||||||||| || |||||||| | |||||||||| |||  |||||||    
T  52913333 aaggactaaatagaaaacgtttacaaacttaaaggacttatgtgtgatcaaaataactcaaagaactaatt 52913403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 1173142 - 1173075
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    |||||||||| ||||||| |||||| |||||||||||||| |  || || ||||||||||||||||||||    
T  1173142 caaacttaaa-gacttatgtgtgaccaaaataacttaaaa-actaatctgttataaacctcaaacttaaa 1173075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 205
Target Start/End: Complemental strand, 2633277 - 2633208
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||||| |||| ||| || |||||||||||||  | ||| |||||| ||| ||||||||||||    
T  2633277 caaacttaaatgatttatgtgtaaccaaaataacttaaatgaacaatctattacaaatctcaaacttaaa 2633208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 1173277 - 1173345
Alignment:
Q  135 tcaaacttaaatgacttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaactta 203  Q
    ||||| |||||  |||||||||| || |||||||||||||   |||| |||||| ||||||||||||||    
T  1173277 tcaaatttaaagaacttatatgtaactaaaataacttaaagtttcaatctattacaaacctcaaactta 1173345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 145
Target Start/End: Complemental strand, 41007140 - 41007055
Alignment:
Q  63 taaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatga-ct---aattataaatatcaaacttaaa 145  Q
    ||||||||||| |||||||||||||||| | ||| |||| || ||||||||| |||||| ||   |||||||||| |||||||||||    
T  41007140 taaattgaaaaaatttacaaacttaaaa-acttacgtgtgactaaaataactcaaatgatctatcaattataaatctcaaacttaaa 41007055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 136 - 213
Target Start/End: Original strand, 2446 - 2524
Alignment:
Q  136 caaacttaaatgacttatatgtgacaaaaataacttaaaa-catcaaactattataaacctcaaacttaaagaacccct 213  Q
    |||||||||||||||||| |||||  ||||||||||||||  | ||| |||||| ||||||||||||||||||||||||    
T  2446 caaacttaaatgacttatgtgtgaacaaaataacttaaaaggaccaatctattacaaacctcaaacttaaagaacccct 2524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0128 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 174
Target Start/End: Original strand, 2550 - 2694
Alignment:
Q  33 attacaaaaaagatgatgtggcaaaaggaataaattgaaaacatttacaaacttaaaagatttatgtgtaaccaaaataacttaaatgacta---attat 129  Q
    |||||||||| |||||| ||| | || ||||||||||||||| ||||||||||||||  | |||||||| |  ||| |||||||||| || |    ||||    
T  2550 attacaaaaacgatgatatggtataacgaataaattgaaaacgtttacaaacttaaagaacttatgtgttataaaagtaacttaaataacaatctgttat 2649  T
Q  130 aaatatcaaacttaaatgacttatatgtgacaaaaataacttaaa 174  Q
    |||  ||||||||||| | ||||||||| || |||||||| ||||    
T  2650 aaacctcaaacttaaaggtcttatatgtaaccaaaataacgtaaa 2694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1191 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1191
Description:

Target: scaffold1191; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 205
Target Start/End: Complemental strand, 1300 - 1243
Alignment:
Q  148 acttatatgtgacaaaaataacttaaaacatcaaactattataaacctcaaacttaaa 205  Q
    ||||||||||||| ||||||||| |||| |  ||  ||||||||||||||||||||||    
T  1300 acttatatgtgactaaaataactaaaaagacgaatatattataaacctcaaacttaaa 1243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University