View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11572_low_9 (Length: 236)

Name: NF11572_low_9
Description: NF11572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11572_low_9
NF11572_low_9
[»] chr4 (13 HSPs)
chr4 (1-223)||(24684314-24684537)
chr4 (1-68)||(2469899-2469968)
chr4 (186-224)||(18991159-18991197)
chr4 (24-72)||(24684048-24684097)
chr4 (1-69)||(12498888-12498958)
chr4 (1-66)||(24684256-24684321)
chr4 (1-69)||(40147230-40147300)
chr4 (1-69)||(45038384-45038454)
chr4 (24-61)||(12592187-12592224)
chr4 (1-68)||(24369272-24369341)
chr4 (24-68)||(45038468-45038513)
chr4 (24-71)||(26782525-26782573)
chr4 (24-71)||(41083346-41083394)
[»] chr8 (8 HSPs)
chr8 (1-70)||(27128144-27128214)
chr8 (1-71)||(9399813-9399885)
chr8 (1-70)||(24827355-24827426)
chr8 (16-69)||(27052617-27052672)
chr8 (1-69)||(6220451-6220521)
chr8 (4-80)||(14549946-14550024)
chr8 (24-65)||(24083264-24083305)
chr8 (1-71)||(24909672-24909744)
[»] chr3 (11 HSPs)
chr3 (1-66)||(252048-252115)
chr3 (1-71)||(28814066-28814138)
chr3 (24-72)||(25848650-25848700)
chr3 (1-73)||(47069523-47069597)
chr3 (24-71)||(18020114-18020162)
chr3 (24-71)||(7607777-7607824)
chr3 (24-70)||(26724302-26724349)
chr3 (1-63)||(28813843-28813906)
chr3 (37-67)||(5442690-5442720)
chr3 (4-64)||(30955017-30955078)
chr3 (4-64)||(30970829-30970890)
[»] scaffold0128 (1 HSPs)
scaffold0128 (1-67)||(2600-2667)
[»] chr5 (11 HSPs)
chr5 (1-69)||(40980710-40980780)
chr5 (10-65)||(12712424-12712480)
chr5 (10-65)||(12773688-12773744)
chr5 (1-72)||(25456272-25456344)
chr5 (24-72)||(25456567-25456615)
chr5 (1-69)||(28559444-28559514)
chr5 (24-69)||(35461728-35461774)
chr5 (24-65)||(13170001-13170042)
chr5 (24-69)||(35813531-35813576)
chr5 (1-67)||(23662147-23662215)
chr5 (24-71)||(35461433-35461481)
[»] chr2 (5 HSPs)
chr2 (24-70)||(45388497-45388543)
chr2 (24-69)||(31630307-31630352)
chr2 (1-72)||(5009441-5009513)
chr2 (24-71)||(31630064-31630111)
chr2 (24-71)||(5009155-5009204)
[»] chr6 (7 HSPs)
chr6 (1-68)||(35225458-35225527)
chr6 (24-71)||(21598442-21598490)
chr6 (1-67)||(35050734-35050802)
chr6 (1-69)||(21598504-21598574)
chr6 (1-69)||(364045-364114)
chr6 (27-72)||(3853493-3853538)
chr6 (24-71)||(21598738-21598786)
[»] chr1 (4 HSPs)
chr1 (24-65)||(1173075-1173116)
chr1 (24-71)||(33650395-33650443)
chr1 (1-69)||(18608637-18608707)
chr1 (10-69)||(40892517-40892577)
[»] chr7 (5 HSPs)
chr7 (24-70)||(3198467-3198514)
chr7 (1-70)||(42312757-42312828)
chr7 (1-81)||(6694738-6694820)
chr7 (24-65)||(11975451-11975492)
chr7 (1-68)||(30869668-30869737)
[»] scaffold0578 (1 HSPs)
scaffold0578 (24-71)||(2473-2522)
[»] scaffold0157 (1 HSPs)
scaffold0157 (1-69)||(21519-21589)
[»] scaffold0018 (1 HSPs)
scaffold0018 (1-71)||(161401-161473)
[»] scaffold0002 (1 HSPs)
scaffold0002 (35-71)||(12048-12084)


Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 24684314 - 24684537
Alignment:
1 acttaaagaacttacgtgtgatcaaataacttaaaa-accaatctattataaacctcaaacttaaaggacccaagtgtaattatttaaccttaaactaat 99  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
24684314 acttaaagaacttacgtgtaatcaaataacttaaaagaccaatctattataaacctcaaacttaaaggacccaagtgtaattatttagccttaaactaat 24684413  T
100 gacaaacatgttgacatgaaaaccatacgacaaattacataacattttaatatgagacaacaatgatgaaaaacatgcagagcatttgtaccatcttcaa 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
24684414 gacaaacatgttgacatgaaaaccatacgacaaattacataacattttaatatgagacaacaatgatgaaaaacatgcagagcatttctaccatcttcaa 24684513  T
200 tcattttaatggtagagagagaat 223  Q
    ||||||||||||||||||||||||    
24684514 tcattttaatggtagagagagaat 24684537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 2469968 - 2469899
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaagga 68  Q
    |||||||| ||||| |||||| |||| ||||||||| ||||||||||||| |||||||||||||||||||    
2469968 acttaaaggacttaggtgtgaccaaaataacttaaagaaccaatctattacaaacctcaaacttaaagga 2469899  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 186 - 224
Target Start/End: Original strand, 18991159 - 18991197
Alignment:
186 tgtaccatcttcaatcattttaatggtagagagagaatt 224  Q
    |||||||||||||||||||||||||| ||||||||||||    
18991159 tgtaccatcttcaatcattttaatggcagagagagaatt 18991197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 24684097 - 24684048
Alignment:
24 aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccca 72  Q
    ||||||||||||| | |||||||||||||||||||||||||||| |||||    
24684097 aaataacttaaaacatcaatctattataaacctcaaacttaaagaaccca 24684048  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 12498888 - 12498958
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    |||||||| ||||| ||||||| ||| |||||||||  | |||||||||| ||||||||||||||||||||    
12498888 acttaaaggacttatgtgtgattaaaataacttaaatgatcaatctattacaaacctcaaacttaaaggac 12498958  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 24684256 - 24684321
Alignment:
1 acttaaagaacttacgtgtga-tcaaataacttaaaaaccaatctattataaacctcaaacttaaag 66  Q
    |||||||| ||||| |||||| | ||||||||||||| ||||||| ||| |||||||||||||||||    
24684256 acttaaaggacttatgtgtgactgaaataacttaaaa-ccaatctgttacaaacctcaaacttaaag 24684321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 40147230 - 40147300
Alignment:
1 acttaaagaacttacgtgtgatcaaata-acttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    |||||||||||||| |||||| ||||   |||||||  |||||| ||||||||||||||||||||||||||    
40147230 acttaaagaacttatgtgtgaccaaaacgacttaaatgaccaatttattataaacctcaaacttaaaggac 40147300  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 45038384 - 45038454
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    |||||||| ||||| |||||| |||| |||||||||  |||||||| ||| ||||||||||||||||||||    
45038384 acttaaaggacttatgtgtgaccaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggac 45038454  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 61
Target Start/End: Complemental strand, 12592224 - 12592187
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaact 61  Q
    ||||||||||||||||||||| ||| ||||||||||||    
12592224 aaataacttaaaaaccaatctgttacaaacctcaaact 12592187  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 24369272 - 24369341
Alignment:
1 acttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattataaacctcaaacttaaagga 68  Q
    |||||||| ||||| |||||| | ||||||||||||  || ||||||||| |||||||||||||||||||    
24369272 acttaaaggacttaggtgtgactaaaataacttaaaggacaaatctattacaaacctcaaacttaaagga 24369341  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 45038468 - 45038513
Alignment:
24 aaataacttaaaa-accaatctattataaacctcaaacttaaagga 68  Q
    ||||||||||||  |||||||||||| |||||||||||||||||||    
45038468 aaataacttaaatgaccaatctattacaaacctcaaacttaaagga 45038513  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 26782525 - 26782573
Alignment:
24 aaataacttaaaaac-caatctattataaacctcaaacttaaaggaccc 71  Q
    ||||||||||||||  |||| ||||| ||||||||||||||||||||||    
26782525 aaataacttaaaaaatcaatatattacaaacctcaaacttaaaggaccc 26782573  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 41083346 - 41083394
Alignment:
24 aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccc 71  Q
    ||||||||||||  |||||||| ||| ||||||||||||||||||||||    
41083346 aaataacttaaaggaccaatctgttacaaacctcaaacttaaaggaccc 41083394  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27128144 - 27128214
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaaggacc 70  Q
    |||||||| ||||  ||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||    
27128144 acttaaaggacttgtgtgtgatcaaaataacctaaaaaccaatctattacaaacctcaaacttaaaggacc 27128214  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 9399885 - 9399813
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||| |||||||||||| |||| ||||||||| ||||||| | ||| ||||||||||||||||||||||    
9399885 acttaaaggacttacgtgtgaccaaagtaacttaaagaaccaatatgttacaaacctcaaacttaaaggaccc 9399813  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 24827426 - 24827355
Alignment:
1 acttaaagaacttacgtgtgatcaa-ataacttaaaa-accaatctattataaacctcaaacttaaaggacc 70  Q
    |||||||| |||||  ||||||||| ||||||||||  |||||||| ||| |||||||||||||||||||||    
24827426 acttaaaggacttagttgtgatcaatataacttaaatgaccaatctgttacaaacctcaaacttaaaggacc 24827355  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 27052617 - 27052672
Alignment:
16 gtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    ||||||||||| |||||||||  |||||||| ||||||||||||||||||||||||    
27052617 gtgtgatcaaaataacttaaaggaccaatctgttataaacctcaaacttaaaggac 27052672  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6220451 - 6220521
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaaggac 69  Q
    |||||||||||||| ||||||  ||| ||||||||| ||||||| | ||| ||||||||||||||||||||    
6220451 acttaaagaacttatgtgtgacaaaaataacttaaagaaccaatttgttacaaacctcaaacttaaaggac 6220521  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 80
Target Start/End: Complemental strand, 14550024 - 14549946
Alignment:
4 taaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaaggacccaagtgtaat 80  Q
    ||||||||||| |||||| |||| |||| |||| ||||||| ||||| |||||||||||||| ||||||  ||||||||    
14550024 taaagaacttatgtgtgaccaaaataacataaagaaccaatatattacaaacctcaaacttagaggaccttagtgtaat 14549946  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 24083264 - 24083305
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaa 65  Q
    |||||||||||||| |||||| ||| ||||||||||||||||    
24083264 aaataacttaaaaatcaatctgttacaaacctcaaacttaaa 24083305  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 24909672 - 24909744
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||| ||||| ||||||||||| |||||||||  |||||| | ||| ||| ||||||||||||||||||    
24909672 acttaaaggacttatgtgtgatcaaaataacttaaaggaccaatttgttacaaatctcaaacttaaaggaccc 24909744  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 252115 - 252048
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaag 66  Q
    |||||||| |||||||||||| |||| |||||||||  ||||||||||||||||||||||||||||||    
252115 acttaaaggacttacgtgtgaccaaaataacttaaatgaccaatctattataaacctcaaacttaaag 252048  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 28814066 - 28814138
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||||||||| || |||||||| |||||||||| || ||||||||| |||||||||| |||||||||||    
28814066 acttaaagaacttatgtctgatcaaaataacttaaaagactaatctattacaaacctcaaatttaaaggaccc 28814138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 25848650 - 25848700
Alignment:
24 aaataacttaaaa--accaatctattataaacctcaaacttaaaggaccca 72  Q
    |||||||||||||  |||||| |||||||||||||||||||||||||||||    
25848650 aaataacttaaaaggaccaatttattataaacctcaaacttaaaggaccca 25848700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 47069597 - 47069523
Alignment:
1 acttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaaggacccaa 73  Q
    |||||||||||||| |||||||| ||||||||||||  |||||| | ||| |||||||||| |||||||||||||    
47069597 acttaaagaacttatgtgtgatcaaaataacttaaaggaccaatatgttacaaacctcaaatttaaaggacccaa 47069523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 18020114 - 18020162
Alignment:
24 aaataacttaaa-aaccaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||||||| || |||||||||| ||||||||||||||||||||||    
18020114 aaataacttaaataatcaatctattacaaacctcaaacttaaaggaccc 18020162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 7607777 - 7607824
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||||||||| | | ||||||||||| |||||||||||||||||    
7607777 aaataacttaaaaaaccaactattataaacttcaaacttaaaggaccc 7607824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 26724302 - 26724349
Alignment:
24 aaataacttaaa-aaccaatctattataaacctcaaacttaaaggacc 70  Q
    |||||||||||| || |||||||||| |||||||||||||||||||||    
26724302 aaataacttaaagaatcaatctattacaaacctcaaacttaaaggacc 26724349  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 28813906 - 28813843
Alignment:
1 acttaaagaacttacgtgtgatc-aaataacttaaaaaccaatctattataaacctcaaactta 63  Q
    ||||||||||||||  ||||| | |||||||||||| | |||||||||| ||||||||||||||    
28813906 acttaaagaacttatatgtgacctaaataacttaaagatcaatctattacaaacctcaaactta 28813843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 67
Target Start/End: Original strand, 5442690 - 5442720
Alignment:
37 accaatctattataaacctcaaacttaaagg 67  Q
    |||||||||||||||||||||||||||||||    
5442690 accaatctattataaacctcaaacttaaagg 5442720  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 30955017 - 30955078
Alignment:
4 taaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaa 64  Q
    ||||| ||||| |||||| |||| ||||||||| || ||||||||| |||||||||||||||    
30955017 taaaggacttatgtgtgaccaaaataacttaaacactaatctattacaaacctcaaacttaa 30955078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 30970829 - 30970890
Alignment:
4 taaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaa 64  Q
    ||||| ||||| |||||| |||| ||||||||| || ||||||||| |||||||||||||||    
30970829 taaaggacttatgtgtgaccaaaataacttaaacactaatctattacaaacctcaaacttaa 30970890  T

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Target: scaffold0128 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2600 - 2667
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaagg 67  Q
    |||||||||||||| |||| || ||| ||||||||| | |||||| ||||||||||||||||||||||    
2600 acttaaagaacttatgtgttataaaagtaacttaaataacaatctgttataaacctcaaacttaaagg 2667  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 40980780 - 40980710
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    |||||||| ||||| ||||||||||| |||||||||  | |||||||||| ||||||||||||||||||||    
40980780 acttaaagtacttatgtgtgatcaaaataacttaaatgatcaatctattacaaacctcaaacttaaaggac 40980710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 12712480 - 12712424
Alignment:
10 acttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaa 65  Q
    ||||| ||||||||||| ||||||||||| |||||||||| |||| |||||||||||    
12712480 acttatgtgtgatcaaaataacttaaaaatcaatctattacaaacatcaaacttaaa 12712424  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 65
Target Start/End: Complemental strand, 12773744 - 12773688
Alignment:
10 acttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaa 65  Q
    ||||| ||||||||||| ||||||||||| |||||||||| |||| |||||||||||    
12773744 acttatgtgtgatcaaaataacttaaaaatcaatctattacaaacatcaaacttaaa 12773688  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 25456344 - 25456272
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaaaccaatctattataaacctcaaacttaaaggaccca 72  Q
    |||||||| ||||| ||||||||||| ||||||||  |||||| | ||| |||||| ||||||||||||||||    
25456344 acttaaaggacttatgtgtgatcaaaataacttaaggaccaatatgttacaaacctaaaacttaaaggaccca 25456272  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 25456567 - 25456615
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaaggaccca 72  Q
    |||||||||||| |||||||| ||| ||||||||||||||||| |||||    
25456567 aaataacttaaagaccaatctgttacaaacctcaaacttaaagaaccca 25456615  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 28559444 - 28559514
Alignment:
1 acttaaagaacttacgtgtga-tcaaataacttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    |||||||| ||||| |||||| | |||||| |||||  |||||||| ||||||||||||||||||||||||    
28559444 acttaaaggacttatgtgtgactaaaataatttaaaggaccaatctgttataaacctcaaacttaaaggac 28559514  T

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Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 35461728 - 35461774
Alignment:
24 aaataacttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    ||||||||||||  |||||||||||| ||||||||||||||||||||    
35461728 aaataacttaaaggaccaatctattacaaacctcaaacttaaaggac 35461774  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 13170042 - 13170001
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaa 65  Q
    |||||||||||| |||||| ||||| ||||||||||||||||    
13170042 aaataacttaaagaccaatttattacaaacctcaaacttaaa 13170001  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 35813531 - 35813576
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaaggac 69  Q
    ||||||||||||||| ||||| ||| |||||||| |||||||||||    
35813531 aaataacttaaaaacaaatctgttacaaacctcacacttaaaggac 35813576  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23662147 - 23662215
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaagg 67  Q
    |||||||||||||| |||| | |||| |||||||||  |||||| ||||| ||||||||||||||||||    
23662147 acttaaagaacttatgtgtaaccaaaataacttaaaggaccaatttattacaaacctcaaacttaaagg 23662215  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 35461481 - 35461433
Alignment:
24 aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccc 71  Q
    ||||||||||||  |||||| ||||| ||||||||||||||||||||||    
35461481 aaataacttaaaggaccaatatattacaaacctcaaacttaaaggaccc 35461433  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 45388497 - 45388543
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaaggacc 70  Q
    ||||||||||||||| ||||||||||||| |||||||||||| ||||    
45388497 aaataacttaaaaactaatctattataaatctcaaacttaaaagacc 45388543  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 31630307 - 31630352
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaaggac 69  Q
    |||||||||||||||||||||||||  ||||||||| |||||||||    
31630307 aaataacttaaaaaccaatctattactaacctcaaatttaaaggac 31630352  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 5009441 - 5009513
Alignment:
1 acttaaagaacttacgtgtgatcaaataacttaaaa-accaatctattataaacctcaaacttaaaggaccca 72  Q
    |||||||| ||||| ||||||  ||| ||||||||| |||||| | ||| |||||||||||||||||||||||    
5009441 acttaaagtacttatgtgtgacaaaaaaacttaaaagaccaatatgttacaaacctcaaacttaaaggaccca 5009513  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 31630111 - 31630064
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||| ||| |||| ||||||||| ||||||||||||||||||||||    
31630111 aaataatttataaacaaatctattacaaacctcaaacttaaaggaccc 31630064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 5009204 - 5009155
Alignment:
24 aaataacttaaaa--accaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||||||||  |||||||||||| ||||||||||||||||| ||||    
5009204 aaataacttaaaaggaccaatctattacaaacctcaaacttaaagaaccc 5009155  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35225527 - 35225458
Alignment:
1 acttaaagaacttacgtgtgatca-aataacttaaaa-accaatctattataaacctcaaacttaaagga 68  Q
    |||||||||||||| ||||||||| |||||||||||  |||||||| ||| |||||| ||||||||||||    
35225527 acttaaagaacttatgtgtgatcagaataacttaaaggaccaatctgttacaaaccttaaacttaaagga 35225458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 21598490 - 21598442
Alignment:
24 aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccc 71  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||    
21598490 aaataacttaaaggaccaatctgttataaacctcaaacttaaaggaccc 21598442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 35050734 - 35050802
Alignment:
1 acttaaagaacttacgtgtgatc-aaataacttaaa-aaccaatctattataaacctcaaacttaaagg 67  Q
    |||||||||||||| |||||||| ||||||||||||  |||||||| ||| |||||| |||||||||||    
35050734 acttaaagaacttatgtgtgatcgaaataacttaaaggaccaatctgttacaaaccttaaacttaaagg 35050802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21598574 - 21598504
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    |||||||| ||||| ||| ||||||| |||||||||  |||||||| ||| ||||||||||||||||||||    
21598574 acttaaaggacttatgtgggatcaaaataacttaaaggaccaatctgttacaaacctcaaacttaaaggac 21598504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 364114 - 364045
Alignment:
1 acttaaagaacttacgtgtgatcaaat-aacttaaaaaccaatctattataaacctcaaacttaaaggac 69  Q
    ||||||||||||||  ||||| ||||  |||||||||| |||||| ||| |||||| |||||||||||||    
364114 acttaaagaacttatttgtgaccaaaacaacttaaaaatcaatctgttacaaaccttaaacttaaaggac 364045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 72
Target Start/End: Complemental strand, 3853538 - 3853493
Alignment:
27 taacttaaaaaccaatctattataaacctcaaacttaaaggaccca 72  Q
    ||||||||||||| |||||||| ||| ||||||||||||| |||||    
3853538 taacttaaaaacctatctattacaaatctcaaacttaaagaaccca 3853493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 21598738 - 21598786
Alignment:
24 aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccc 71  Q
    ||||||||||||  |||||||| ||| ||||||||||||||||||||||    
21598738 aaataacttaaaggaccaatctgttacaaacctcaaacttaaaggaccc 21598786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 1173116 - 1173075
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaa 65  Q
    ||||||||||||||| ||||| ||||||||||||||||||||    
1173116 aaataacttaaaaactaatctgttataaacctcaaacttaaa 1173075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 33650443 - 33650395
Alignment:
24 aaataacttaaaa-accaatctattataaacctcaaacttaaaggaccc 71  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||||||    
33650443 aaataacttaaaggaccaatctgttataaacctcaaacttaaaggaccc 33650395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 18608707 - 18608637
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaa-aaccaatctattataaacctcaaacttaaaggac 69  Q
    |||||||| ||||| |||||| |||| ||||||||| || |||||| ||| ||||||||||||||||||||    
18608707 acttaaaggacttaagtgtgaccaaaataacttaaagaatcaatctgttacaaacctcaaacttaaaggac 18608637  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 69
Target Start/End: Original strand, 40892517 - 40892577
Alignment:
10 acttacgtgtgatc-aaataacttaaaaaccaatctattataaacctcaaacttaaaggac 69  Q
    ||||| |||||||| ||||||||||||  ||||||| ||| |||||||||| |||||||||    
40892517 acttatgtgtgatcgaaataacttaaagtccaatctgttacaaacctcaaatttaaaggac 40892577  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 3198467 - 3198514
Alignment:
24 aaataacttaaa-aaccaatctattataaacctcaaacttaaaggacc 70  Q
    |||||||||||| ||||||| ||||||| |||||||||||||||||||    
3198467 aaataacttaaataaccaatttattatagacctcaaacttaaaggacc 3198514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 42312828 - 42312757
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggacc 70  Q
    |||||||| ||||| |||||| |||| |||||||||  |||||| ||||| |||||||||||||||||||||    
42312828 acttaaaggacttatgtgtgaccaaaataacttaaatgaccaatatattacaaacctcaaacttaaaggacc 42312757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 6694738 - 6694820
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggacccaagtgtaatt 81  Q
    |||||||| ||||| |||||| |||| |||||||||  |||||| | ||| ||||||||||||||||||||||  ||||||||    
6694738 acttaaaggacttatgtgtgaccaaaataacttaaaggaccaatatgttacaaacctcaaacttaaaggacccgggtgtaatt 6694820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 65
Target Start/End: Complemental strand, 11975492 - 11975451
Alignment:
24 aaataacttaaaaaccaatctattataaacctcaaacttaaa 65  Q
    ||||||||||||||| ||| ||||| ||||||||||||||||    
11975492 aaataacttaaaaactaatttattacaaacctcaaacttaaa 11975451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 30869668 - 30869737
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaagga 68  Q
    |||||||||||||| || ||| |||| |||||||||  ||||||| |||| |||||||||||||||||||    
30869668 acttaaagaacttatgtatgaccaaaataacttaaaggaccaatcaattacaaacctcaaacttaaagga 30869737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 2473 - 2522
Alignment:
24 aaataacttaaaa--accaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||||||||  |||||||||||| ||||||||||||||||| ||||    
2473 aaataacttaaaaggaccaatctattacaaacctcaaacttaaagaaccc 2522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 21589 - 21519
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggac 69  Q
    |||||||| ||||| ||||||| ||| |||||||||  | |||||||||| ||||||||||||||||||||    
21589 acttaaaggacttatgtgtgattaaaataacttaaatgatcaatctattacaaacctcaaacttaaaggac 21519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 161473 - 161401
Alignment:
1 acttaaagaacttacgtgtgatcaaa-taacttaaaa-accaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||| ||||| |||||| |||| ||| |||||  |||||||| ||| ||||||||||||||||||||||    
161473 acttaaaggacttatgtgtgaccaaaataagttaaaggaccaatctgttacaaacctcaaacttaaaggaccc 161401  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Complemental strand, 12084 - 12048
Alignment:
35 aaaccaatctattataaacctcaaacttaaaggaccc 71  Q
    |||||||| ||||| ||||||||||||||||||||||    
12084 aaaccaatttattacaaacctcaaacttaaaggaccc 12048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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