View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_high_13 (Length: 362)
Name: NF11573_high_13
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 343
Target Start/End: Original strand, 29008878 - 29009207
Alignment:
| Q |
14 |
gaagccaagacgaccacgaacatagctttcactgcccagactggcctcattttcctannnnnnnnnnnnnnnnnnnnnnnncacagagttaactatagct |
113 |
Q |
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| T |
29008878 |
gaagccaagacgaccacgaacatagctttcactgcccagactggcctcattttcctacaaatcaaaccaaaaaatcaaaaacacagagttaactatagct |
29008977 |
T |
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| Q |
114 |
tcgattcaaattcttcatctaattgaatgaatataacaccgtaacagtgtcaaatgaaattgaagaattagtttcagtgaaaatagtagcgtgcaaatgc |
213 |
Q |
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| T |
29008978 |
tcgattcaaattcttcatctaatcgaatgaatacaacaccgtaacagtatcaaatgcaattgaagaattagtttcagtgaaaattgtagcgtgcaaatgc |
29009077 |
T |
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| Q |
214 |
aaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatttaatcaagaagttgaagcgaacatatatgatcttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
29009078 |
aaattatatagaaatgtgaaggtgaatttgaataaaatgaaaccagaatcggaatttgaagaatgtaatcaagaagttgaagcgaacctatatgatcttt |
29009177 |
T |
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| Q |
314 |
gcgcggttgaagagtttgttatgaattcag |
343 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
29009178 |
gcgcggttgaagagtttgttatgaattcag |
29009207 |
T |
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