View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11573_high_14 (Length: 329)

Name: NF11573_high_14
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11573_high_14
NF11573_high_14
[»] chr4 (3 HSPs)
chr4 (18-228)||(29783802-29784012)
chr4 (18-228)||(29787809-29788019)
chr4 (27-77)||(48362743-48362793)
[»] chr3 (1 HSPs)
chr3 (32-109)||(9844959-9845036)
[»] chr8 (1 HSPs)
chr8 (32-76)||(20081469-20081513)
[»] chr6 (1 HSPs)
chr6 (68-104)||(2022673-2022709)
[»] chr1 (1 HSPs)
chr1 (119-151)||(42636127-42636159)


Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 29783802 - 29784012
Alignment:
Q  18 gttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttgccgaattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29783802 gttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttgccgaattc 29783901  T
Q  118 taaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaacgtttattttgttagtaaaaatgaaaacagaaaacaatagaagtaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29783902 taaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaatgtttattttgttagtaaaaatgaaaacagaaaacaatagaagtaaa 29784001  T
Q  218 tggccccactg 228  Q
    |||||||||||    
T  29784002 tggccccactg 29784012  T

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Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 29787809 - 29788019
Alignment:
Q  18 gttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttgccgaattc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29787809 gttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttgccgaattc 29787908  T
Q  118 taaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaacgtttattttgttagtaaaaatgaaaacagaaaacaatagaagtaaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  29787909 taaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaatgtttattttgttagtaaaaatgaaaacagaaaacaatagaagtaaa 29788008  T
Q  218 tggccccactg 228  Q
    |||||||||||    
T  29788009 tggccccactg 29788019  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 48362793 - 48362743
Alignment:
Q  27 tttagttgtgatatagagaagatagtagctaactagagagaatgcatttct 77  Q
    |||| |||||||| ||||||||| | |||||||||||||||||||||||||    
T  48362793 tttaattgtgatagagagaagatggaagctaactagagagaatgcatttct 48362743  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 9844959 - 9845036
Alignment:
Q  32 ttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttg 109  Q
    |||||||| ||||||||||| || |||||||||||||||||||| | |||| |  ||||| |||| ||| ||||||||    
T  9844959 ttgtgatagagagaagatagaagttaactagagagaatgcatttttggaaacaatgaaaataatgttttgaaagtttg 9845036  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 20081513 - 20081469
Alignment:
Q  32 ttgtgatatagagaagatagtagctaactagagagaatgcatttc 76  Q
    |||||||| | |||| |||| ||||||||||||||||||||||||    
T  20081513 ttgtgatagacagaatatagaagctaactagagagaatgcatttc 20081469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 2022673 - 2022709
Alignment:
Q  68 atgcatttctagaaataccgaaaacaatgctttcaaa 104  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  2022673 atgcatttccagaaataccgaaaacaatgttttcaaa 2022709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 42636159 - 42636127
Alignment:
Q  119 aaatattcaatctattttcaaatgcattttcaa 151  Q
    |||||||||||||||||| ||||||||||||||    
T  42636159 aaatattcaatctattttgaaatgcattttcaa 42636127  T

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