View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_high_15 (Length: 326)
Name: NF11573_high_15
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 1 - 181
Target Start/End: Original strand, 5667165 - 5667345
Alignment:
| Q |
1 |
aagaactatgaagttgtcacagtgttctaaaaactcaagaaatcaaaaaatgtcacagcctaaactagaagtttcttaaaacaccaaaacacatcacagc |
100 |
Q |
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| T |
5667165 |
aagaactatgaagttgtcacagtgttctaaaaactcaagaattcaaaaaatgtcacagcctaaactagaagtttcttaaaacaccaaaacacatcacacc |
5667264 |
T |
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| Q |
101 |
aaagaaaataaacttgttgtgaatggtgaatgtgagtaaggatgtggaagaatttgtttaaggaagataatggatttttat |
181 |
Q |
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| T |
5667265 |
aaagaaaataaactagttgtgaatggtgaatgtgagtaaggatgtggaagaatttgtttaaggaagataatggatttttat |
5667345 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 181 - 307
Target Start/End: Original strand, 5668308 - 5668434
Alignment:
| Q |
181 |
taacatatgagaataggagttctctcctctatttattttttctactctttcttgattctgcattcttatttatagtcaaaactagttcaaggtgaagagc |
280 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5668308 |
taacatatgagaataggagttctctcctctatttattttttctactctttcttgattctgcattcttatttatagtcaaaactaggtcaaggtgaagagc |
5668407 |
T |
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| Q |
281 |
aactgctaaatattcaaagttagttat |
307 |
Q |
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| T |
5668408 |
aactgctaaatattcaaagttagttat |
5668434 |
T |
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