View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_high_27 (Length: 242)
Name: NF11573_high_27
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_high_27 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 32898115 - 32898339
Alignment:
| Q |
18 |
catgtaagagtttcttatcacacttttgtgaatacatgagtttgcatgggaaccataaccattcacatcaatttttcaaaaactgttttgcttatgctaa |
117 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| | |
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| T |
32898115 |
catgtaagagtttcctatcacacttttgtgaatacatgagtttgcatgggaaccataaccattcacattcatttttcaaaaactattttgcttatgctta |
32898214 |
T |
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| Q |
118 |
aaactagtatgtacgtatatcactgctattttcaccacagttttcattttgcatagggtttagtttatcatcatcaattatcattaactaccttcaaaat |
217 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
32898215 |
aaactagtatgtacgtatatcactgccattttcaccacagttttcattttgcatagggtttagtttatcatcatcaattatcattaactacctacaaaat |
32898314 |
T |
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| Q |
218 |
attaatgcttccatgttcagctttt |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
32898315 |
attaatgcttccatgttcagctttt |
32898339 |
T |
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