View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_high_3 (Length: 549)
Name: NF11573_high_3
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Original strand, 6737870 - 6738392
Alignment:
| Q |
13 |
agcataggcgttgcctgaagagtgtgactgattcgggtgcttgcttgaggggttcttgcttattgtagggcgatggtagtccacaaggtatccaggtggt |
112 |
Q |
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||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6737870 |
agcataggctttacctgaagagtgggactgatccgggtgcttgcttgaggggttcttgcttattgtagggcgatggtagtccacaaggtatccaggtggt |
6737969 |
T |
|
| Q |
113 |
cgcctgttacgtggtgggagatcaatgaagccactttgttgttgggtttcatccctctcatcagttctaccttcttgtatcatctcccccaaaatttgcg |
212 |
Q |
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|||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
6737970 |
cgcctgttacgtggtgggagatcaatgaggccattttgttgttgggtttcatccttctcatcagttctgccttcttgtatcatctcccccaaaatttgtg |
6738069 |
T |
|
| Q |
213 |
tcgagtcnnnnnnnncttgaccatttcgctcctcaacgttcatctcgttctcatgactctcatcttcgtgtgattcagagatgtcatgaaaaatttgaga |
312 |
Q |
| |
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||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
6738070 |
tcgagtcttctttttcttgaccatttcgctcctcatctttcatctcgttctcatgactctcatcttcgtgtgattcagagatgtcatgaaaaattttaga |
6738169 |
T |
|
| Q |
313 |
aggtgcctctttgattttatttgtttgagattcaatgtagggaaatatgtgctcataaaatataacatctcgcgaggtgtagaattcatgagtccttaaa |
412 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
6738170 |
gggtgcctctttgatcttatttgtttgagattcaatgtagggaaatatgtgctcataaaatataacatctcgcgaggtgtagaattcacgagtccttaaa |
6738269 |
T |
|
| Q |
413 |
ctgtagactctccaacctttctggccttgcgggtaaccaacaaagatgcacttctctgctcttgggtcaaatttgtctctggatttcaaacgcgttccaa |
512 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6738270 |
ctgtagactctccaacctttatggccttgcgggtaaccaacaaagatgcacttctctgctcttgggtcaaatttgtctctggatttcaaacgcgttccaa |
6738369 |
T |
|
| Q |
513 |
cataacataaacacccaaaaact |
535 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
6738370 |
cataacataaacacccaaaaact |
6738392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 13 - 535
Target Start/End: Original strand, 52079465 - 52079987
Alignment:
| Q |
13 |
agcataggcgttgcctgaagagtgtgactgattcgggtgcttgcttgaggggttcttgcttattgtagggcgatggtagtccacaaggtatccaggtggt |
112 |
Q |
| |
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||||||||| || ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52079465 |
agcataggctttacctgaagagtgggactgatccgggtgcttgcttgaggggttcttgcttattgtagggcgatggtagtccacaaggtatccaggtggt |
52079564 |
T |
|
| Q |
113 |
cgcctgttacgtggtgggagatcaatgaagccactttgttgttgggtttcatccctctcatcagttctaccttcttgtatcatctcccccaaaatttgcg |
212 |
Q |
| |
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||||| |||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| | |
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| T |
52079565 |
cgcctattacgtggtgggagatcaatgaggccattttgttgttgggtttcatccttctcatcagttctgccttcttgtatcatctcccccaaaatttgtg |
52079664 |
T |
|
| Q |
213 |
tcgagtcnnnnnnnncttgaccatttcgctcctcaacgttcatctcgttctcatgactctcatcttcgtgtgattcagagatgtcatgaaaaatttgaga |
312 |
Q |
| |
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||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52079665 |
tcgagtcttctttttcttgaccatttcgctcctcatctttcatctcgttctcatgactctcatcttcgtgtgattcagagatgtcatgaaaaattttaga |
52079764 |
T |
|
| Q |
313 |
aggtgcctctttgattttatttgtttgagattcaatgtagggaaatatgtgctcataaaatataacatctcgcgaggtgtagaattcatgagtccttaaa |
412 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
52079765 |
gggtgcctctttgatcttatttgtttgagattcaatgtagggaaatatgtgctcataaaatataacatctcgcgaggtgtagaattcacgagtccttaaa |
52079864 |
T |
|
| Q |
413 |
ctgtagactctccaacctttctggccttgcgggtaaccaacaaagatgcacttctctgctcttgggtcaaatttgtctctggatttcaaacgcgttccaa |
512 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52079865 |
ctgtagactctccaacctttatggccttgcgggtaaccaacaaagatgcacttctctgctcttgggtcaaatttgtctctggatttcaaacgcgttccaa |
52079964 |
T |
|
| Q |
513 |
cataacataaacacccaaaaact |
535 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
52079965 |
cataacataaacacccaaaaact |
52079987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 489
Target Start/End: Original strand, 33722240 - 33722315
Alignment:
| Q |
414 |
tgtagactctccaacctttctggccttgcgggtaaccaacaaagatgcacttctctgctcttgggtcaaatttgtc |
489 |
Q |
| |
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|||||||| ||||||||||||| ||||| || || || |||||||| ||| | ||||||||||| ||||||||||| |
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| T |
33722240 |
tgtagactttccaacctttctgtccttgtggatagcctacaaagatacacctttctgctcttggatcaaatttgtc |
33722315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 489
Target Start/End: Original strand, 33795733 - 33795808
Alignment:
| Q |
414 |
tgtagactctccaacctttctggccttgcgggtaaccaacaaagatgcacttctctgctcttgggtcaaatttgtc |
489 |
Q |
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|||||||| ||||||||||||| ||||| || || || |||||||| ||| | | ||||||||| ||||||||||| |
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| T |
33795733 |
tgtagactttccaacctttctgtccttgtggatagcctacaaagatacacctttatgctcttggatcaaatttgtc |
33795808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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