View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_high_33 (Length: 216)
Name: NF11573_high_33
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_high_33 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 31456620 - 31456438
Alignment:
| Q |
16 |
atgaaagcacaagaagaatatgacacaaaattgtaatgaactcaccactgaaagtattggttttggaaaagctctatcaagtgcatctagaataattcct |
115 |
Q |
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| T |
31456620 |
atgaaagcacaagaagaatatgacacaaaattgtaatgaactcaccactgaaagtattggctttggaaaagctctatcaagtgcatctagaataattcct |
31456521 |
T |
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| Q |
116 |
tgctgttgagtagtattaaatttctgtgaagccacggtagctgcctcaacaaggctatcaaaaccactcttattgttactgat |
198 |
Q |
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| T |
31456520 |
tgctgttgagtagtattaaatttctgtgaagccacggtagctgcctcaacaaggctatcaaaaccactcttattgttactgat |
31456438 |
T |
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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 197
Target Start/End: Original strand, 38465235 - 38465318
Alignment:
| Q |
114 |
cttgctgttgagtagtattaaatttctgtgaagccacggtagctgcctcaacaaggctatcaaaaccactcttattgttactga |
197 |
Q |
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|||| |||||| ||| ||||||||||||| |||| |||||||||||||||||||| ||| | |||||||||||||| |||| |
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| T |
38465235 |
cttgttgttgaatagcattaaatttctgttttgccatagtagctgcctcaacaaggctctcatagccactcttattgtttctga |
38465318 |
T |
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