View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_high_6 (Length: 462)
Name: NF11573_high_6
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 10 - 443
Target Start/End: Complemental strand, 53626224 - 53625791
Alignment:
| Q |
10 |
tgagatgaactggtgcaatgtaatgtaattcatttacataactagacatgaagacctgccgcgtacaattgtcttatatttgaacaactaaaattgaaca |
109 |
Q |
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| T |
53626224 |
tgagatgaactggtgcaatgtaatgtaattcatttacataactagacatgaagacctgccgcgtacaattgttttatatttgaacaactaaaattgaaca |
53626125 |
T |
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| Q |
110 |
tcttttgccacaactttaagtggttaatctagctcaaatatatgaggttatgtcaacgagttataaaattaaaacaccaaagtataaattaaatttcaaa |
209 |
Q |
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| T |
53626124 |
tcttttgccacaactttaagtggttaatctagctcaaatatatgaggttatgtcaacgagttataaaattaaaacaccaaagtataaattaaatttcaaa |
53626025 |
T |
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| Q |
210 |
caatatattacctcgaaagtgaagttctcattggaacaattataataacattaacatcctcgaaaacattggccgtcggaattggtgtggagctaggaaa |
309 |
Q |
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| T |
53626024 |
caatatattacctcgaaagtgaagttctcattggaacaattataataacattaacatcctcgaaaacattggccgtcggaattggtgtggagctaggaaa |
53625925 |
T |
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| Q |
310 |
tgatggtttgttattaagcacctgaagcccccaaactttatgtagcaaacaatcaatacaaacaaatatacagtgtggctgtggtatatgcagcctattg |
409 |
Q |
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| T |
53625924 |
tgatggtttgttattaagcacctgaagcccccaaactttatgtagcaaacaatcaatacaaacaaatatacagtgtggctgtggtatatgcagcctattg |
53625825 |
T |
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| Q |
410 |
cctgtagatggaaaagaaaaatccagggacaacg |
443 |
Q |
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| T |
53625824 |
cctgtagatggaaaagaaaaatccagggacaacg |
53625791 |
T |
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