View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11573_high_7 (Length: 452)
Name: NF11573_high_7
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 20 - 442
Target Start/End: Complemental strand, 37098934 - 37098520
Alignment:
| Q |
20 |
cttactcctcccaaaaacacattcacacgtgccatctctaacccatacatacaactccttcctttctgtggtgcaactaataaaagttagagagagaaag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37098934 |
cttactcctcccaaaaacacattcacacgtgccacctctaacccatacatacaactccttcctttctgtggtgcaactaataaaagttagagagagaaag |
37098835 |
T |
|
| Q |
120 |
taaccaatatatagacacacatagaaatgagataaaataaagggcatatactaacnnnnnnncttggtcttgcccatatagtagaccactagatgagttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | | || |||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37098834 |
taaccaatatatagacacacatagaaatgagacattaaaa---gcatatactaactttttttcttggtcttgcccatatagtagaccactagatgagttt |
37098738 |
T |
|
| Q |
220 |
actcatctaataataattttcaatcttgnnnnnnnctctcataaaatctcaaaaccaaaagatcctttatcttctaaacaaagtcttttattcattttta |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37098737 |
actcatctaataataattttcaatcttgtttttttctctcataaaatctcaaaaccaaaagatcctttatcttctaaacaaagtcttttattcattttta |
37098638 |
T |
|
| Q |
320 |
gagagtgaatctcgtgagtttaatttggtgcagaactttcaaactttttctttcaatcttgcacccatgaggatccgtaagagacaacttcttttctctt |
419 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37098637 |
gagagtgaatctcgtgagttt-----ggtgcagaactttcaaactttttctttcaatcttgcacccatgaggatccgtaagagacaacttcttttctctt |
37098543 |
T |
|
| Q |
420 |
cttctgagtctctttcacctttg |
442 |
Q |
| |
|
||||||| ||||||||||||||| |
|
|
| T |
37098542 |
cttctgactctctttcacctttg |
37098520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 41 - 443
Target Start/End: Complemental strand, 37092645 - 37092243
Alignment:
| Q |
41 |
ttcacacgtgccatctctaacccatacatacaactccttcctttctgtggtgcaactaataaaa--gttagagagagaaagtaac-----------caat |
127 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
37092645 |
ttcacacgtgccatctctcacccataca----actccttcctttctgtggtgcaactaataaaaaagttagagagagaaagtaactcgtgtggaaccaat |
37092550 |
T |
|
| Q |
128 |
atatagacacacatagaaatgagataaaataaagggcatatactaacnnnnnnncttggtcttgcccatatagtagaccactagatgagtttactcatct |
227 |
Q |
| |
|
||||||||||||| | |||| ||| ||||| | |||||| |||| ||||||| | ||||| |||||||| |||||| |||||||||||| |
|
|
| T |
37092549 |
atatagacacacacaaaaatac--taagataaaag-catata-taactttttttcttggtccttcccatgtagtagac---tagatgggtttactcatct |
37092457 |
T |
|
| Q |
228 |
aat-------aataattttcaatcttgnnnnnnnctctcataaaatctcaaaaccaaaagatcctttatcttctaaacaaagtcttttattc---atttt |
317 |
Q |
| |
|
||| ||||||||||||||||| ||||| || |||||||||||||||||||||||| | ||||||||||||||||||||| ||||| |
|
|
| T |
37092456 |
aatctaatctaataattttcaatcttgtttttttctctcttacaatctcaaaaccaaaagatcctttcttttctaaacaaagtcttttattatttatttt |
37092357 |
T |
|
| Q |
318 |
tagagagtgaatctcgtgagtttaatttggtgcagaactttcaaactttttctttcaatcttgcacccatgaggatccgtaagagacaacttcttttctc |
417 |
Q |
| |
|
|||||||||||||||||||||| ||| | | || ||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37092356 |
gagagagtgaatctcgtgagttt------gtg------tgtacaagttttttcttcaatcttgcaccgatgaggatccgtaagagacaacttcttttctc |
37092269 |
T |
|
| Q |
418 |
ttcttctgagtctctttcacctttgc |
443 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
37092268 |
ttcttctgactctctttcacctttgc |
37092243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University