View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_high_8 (Length: 417)
Name: NF11573_high_8
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 388; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 1 - 404
Target Start/End: Original strand, 48943593 - 48943996
Alignment:
| Q |
1 |
tactgtgaggtaaacattgtctcttgctatagaattacagcttcacaacatatcttctgccgaagagagggatgaatatgtcaacaatctccttttcaaa |
100 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48943593 |
tactgtgagggaaacgttgtctcttgctatagaattacagcttcacaacatatcttctgccgaagagagggatgaatatgtcaacaatctccttttcaaa |
48943692 |
T |
|
| Q |
101 |
acaggcctggtgagtttttctatatggtataatttgtttcagtcgcaaagtagttgctggtttttaagtagattttttcaacaaacctttatatcttcct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48943693 |
acaggcctggtgagtttttctatatggtataatttgtttcagtcgcaaagtagttgctggtttttaagtagattttttcaacaaacctttatatcttcct |
48943792 |
T |
|
| Q |
201 |
tgaagattgatgaattttggtccttcaattatgattgactactgctcttatatctgttttatgccttccatatctgtatgcttgctcgccatcctcccaa |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |
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| T |
48943793 |
tgaagattgatgaattttggtccttcaattatgattgactactgctcttatatctgttttatgccttccatatttgcatgcttgctcgccatcctcccaa |
48943892 |
T |
|
| Q |
301 |
gttccaaaaatgaaaattactatcaaagttacttgtatgattatttttagctttcctatatcagattcatgattgaaaatttgttagtctcattggacag |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48943893 |
gttccaaaaatgaaaattactatcaaagttacttgtatgattatttttagctttcctatatcagattcatgattgaaaatttgttagtctcattggacag |
48943992 |
T |
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| Q |
401 |
ttct |
404 |
Q |
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|||| |
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| T |
48943993 |
ttct |
48943996 |
T |
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