View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_11 (Length: 392)
Name: NF11573_low_11
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 40207536 - 40207795
Alignment:
| Q |
1 |
cgaacaatctctggttgaaactgattacactgacgttcaatgaaaatacactaacattatgcaacaattttttctaaattgtacatattttttggccaat |
100 |
Q |
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| T |
40207536 |
cgaacaatctctggttgaaaccggttacactgacgttcaatgaaaatacactaacactatgcaacaattttttctaaattgtacatatattttggccaat |
40207635 |
T |
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| Q |
101 |
tttaaattatagttataagtacgaacaatatcatgagtttttattgaatgtcgaaattaatagtaaatctcgattaaactcaactaaagaatccatgtaa |
200 |
Q |
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| T |
40207636 |
tttaaattgtagttataaatacgaacaatatcatgagttttcattgaatgtcgaaattaatagtaaatctcgattaaactcaactaaagaatctatgt-- |
40207733 |
T |
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| Q |
201 |
aaacacaaccatggaaagggaaacttaaaattccaccacatgtaattaaacaaaaaattgtt |
262 |
Q |
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| T |
40207734 |
aaacacaaccatggaaagggaaacttaaaattccaccacatgttattaaacaaaaaattgtt |
40207795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 286 - 347
Target Start/End: Original strand, 40207796 - 40207857
Alignment:
| Q |
286 |
ttagttactctaaagtgaacaagtcacttgtaaaattgttactttacatgagccaaattaac |
347 |
Q |
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| T |
40207796 |
ttagttactctaaagtgaacaagtcacttgtaaaattgttactttagatgagccaaattaac |
40207857 |
T |
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