View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_14 (Length: 329)
Name: NF11573_low_14
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 29783802 - 29784012
Alignment:
| Q |
18 |
gttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttgccgaattc |
117 |
Q |
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| T |
29783802 |
gttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttgccgaattc |
29783901 |
T |
|
| Q |
118 |
taaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaacgtttattttgttagtaaaaatgaaaacagaaaacaatagaagtaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29783902 |
taaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaatgtttattttgttagtaaaaatgaaaacagaaaacaatagaagtaaa |
29784001 |
T |
|
| Q |
218 |
tggccccactg |
228 |
Q |
| |
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||||||||||| |
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| T |
29784002 |
tggccccactg |
29784012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 29787809 - 29788019
Alignment:
| Q |
18 |
gttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttgccgaattc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787809 |
gttttatcttttagttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttgccgaattc |
29787908 |
T |
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| Q |
118 |
taaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaacgtttattttgttagtaaaaatgaaaacagaaaacaatagaagtaaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29787909 |
taaatattcaatctattttcaaatgcattttcaaaatcttaatacttctctaatgtttattttgttagtaaaaatgaaaacagaaaacaatagaagtaaa |
29788008 |
T |
|
| Q |
218 |
tggccccactg |
228 |
Q |
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||||||||||| |
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| T |
29788009 |
tggccccactg |
29788019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 48362793 - 48362743
Alignment:
| Q |
27 |
tttagttgtgatatagagaagatagtagctaactagagagaatgcatttct |
77 |
Q |
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|||| |||||||| ||||||||| | ||||||||||||||||||||||||| |
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|
| T |
48362793 |
tttaattgtgatagagagaagatggaagctaactagagagaatgcatttct |
48362743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 9844959 - 9845036
Alignment:
| Q |
32 |
ttgtgatatagagaagatagtagctaactagagagaatgcatttctagaaataccgaaaacaatgctttcaaagtttg |
109 |
Q |
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|||||||| ||||||||||| || |||||||||||||||||||| | |||| | ||||| |||| ||| |||||||| |
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|
| T |
9844959 |
ttgtgatagagagaagatagaagttaactagagagaatgcatttttggaaacaatgaaaataatgttttgaaagtttg |
9845036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 20081513 - 20081469
Alignment:
| Q |
32 |
ttgtgatatagagaagatagtagctaactagagagaatgcatttc |
76 |
Q |
| |
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|||||||| | |||| |||| |||||||||||||||||||||||| |
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|
| T |
20081513 |
ttgtgatagacagaatatagaagctaactagagagaatgcatttc |
20081469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 68 - 104
Target Start/End: Original strand, 2022673 - 2022709
Alignment:
| Q |
68 |
atgcatttctagaaataccgaaaacaatgctttcaaa |
104 |
Q |
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||||||||| ||||||||||||||||||| ||||||| |
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| T |
2022673 |
atgcatttccagaaataccgaaaacaatgttttcaaa |
2022709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 42636159 - 42636127
Alignment:
| Q |
119 |
aaatattcaatctattttcaaatgcattttcaa |
151 |
Q |
| |
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|||||||||||||||||| |||||||||||||| |
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| T |
42636159 |
aaatattcaatctattttgaaatgcattttcaa |
42636127 |
T |
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