View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11573_low_16 (Length: 324)

Name: NF11573_low_16
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11573_low_16
NF11573_low_16
[»] chr4 (5 HSPs)
chr4 (151-312)||(31951115-31951276)
chr4 (19-154)||(31951719-31951854)
chr4 (19-154)||(55320620-55320755)
chr4 (151-312)||(55319973-55320138)
chr4 (112-148)||(31606986-31607022)
[»] chr5 (2 HSPs)
chr5 (151-220)||(2778272-2778341)
chr5 (112-149)||(12632120-12632157)
[»] chr1 (1 HSPs)
chr1 (112-149)||(45290907-45290944)
[»] chr7 (1 HSPs)
chr7 (159-199)||(19055545-19055585)
[»] chr3 (2 HSPs)
chr3 (159-199)||(50807847-50807887)
chr3 (159-199)||(50867991-50868031)


Alignment Details
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 151 - 312
Target Start/End: Complemental strand, 31951276 - 31951115
Alignment:
Q  151 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgctaataaggnnnnnnnnatgtttgtaggattgatggttt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||    
T  31951276 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgctaataaggttttttttatgtttgtaggattgatggttt 31951177  T
Q  251 agcggaaattggatgatactatgggtcagttccaatgtttggttttctcatgtcttaattca 312  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  31951176 agcggaaattggatgatactgtgggtcagttccaatgtttggttttctcatgtcttaattca 31951115  T

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Target: chr4; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 31951854 - 31951719
Alignment:
Q  19 gatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttggaatatatgttcataatctatatattctttgtatggattggcctctaat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  31951854 gatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttgaaatatatgttcataatctatatgttctttgtatggattggcctctaat 31951755  T
Q  119 ttattttacaagtgtcgtgaaattaaatttattgat 154  Q
    ||||||||||||||||||||||||||||||||||||    
T  31951754 ttattttacaagtgtcgtgaaattaaatttattgat 31951719  T

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Target: chr4; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 55320755 - 55320620
Alignment:
Q  19 gatatctctttatcaaataatttgttgtcgttagaatttaggtcacctttggaatatatgttcataatctatatattctttgtatggattggcctctaat 118  Q
    ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  55320755 gatatctctttatcaaataatttgttgtcattagaatttaggatacctttggaatatatgttcataatctatatgttctttgtatggattggcctctaat 55320656  T
Q  119 ttattttacaagtgtcgtgaaattaaatttattgat 154  Q
    |||||||||||||||| |||||||||||||||||||    
T  55320655 ttattttacaagtgtcatgaaattaaatttattgat 55320620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 151 - 312
Target Start/End: Complemental strand, 55320138 - 55319973
Alignment:
Q  151 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgctaataaggnnnnnnnnatgtttgtaggattgatggttt 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||| |||||||||| |||    
T  55320138 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgctaataagg-tttttttatgtttgaaggattgatgattt 55320040  T
Q  251 agcggaaattggatgat-----actatgggtcagttccaatgtttggttttctcatgtcttaattca 312  Q
    | |||||||||| ||||     ||| | ||||||| ||||||||||||||| |||||||||||||||    
T  55320039 aacggaaattgggtgatataaaactgtaggtcagtaccaatgtttggttttttcatgtcttaattca 55319973  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 31606986 - 31607022
Alignment:
Q  112 ctctaatttattttacaagtgtcgtgaaattaaattt 148  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31606986 ctctaatttattttacaagtgtcatgaaattaaattt 31607022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 2778272 - 2778341
Alignment:
Q  151 tgatcttaagttaggggactaaagtgctcaatataatggattaatatttcacttgcctttgctaataagg 220  Q
    |||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||    
T  2778272 tgatcttaagttagtggactaaagtgctcaatataatggattagtatttcacctgcctttgctaataagg 2778341  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 12632157 - 12632120
Alignment:
Q  112 ctctaatttattttacaagtgtcgtgaaattaaattta 149  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  12632157 ctctaatttattttacaagtgtcatgaaattaaattta 12632120  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 112 - 149
Target Start/End: Complemental strand, 45290944 - 45290907
Alignment:
Q  112 ctctaatttattttacaagtgtcgtgaaattaaattta 149  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  45290944 ctctaatttattttacaagtgtcatgaaattaaattta 45290907  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 19055545 - 19055585
Alignment:
Q  159 agttaggggactaaagtgctcaatataatggattaatattt 199  Q
    |||||| || ||||||||| |||||||||||||||||||||    
T  19055545 agttagtgggctaaagtgcccaatataatggattaatattt 19055585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 50807887 - 50807847
Alignment:
Q  159 agttaggggactaaagtgctcaatataatggattaatattt 199  Q
    |||||| ||| |||||||| |||||||||||||||||||||    
T  50807887 agttagtggaataaagtgcccaatataatggattaatattt 50807847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 199
Target Start/End: Original strand, 50867991 - 50868031
Alignment:
Q  159 agttaggggactaaagtgctcaatataatggattaatattt 199  Q
    |||||| ||| |||||||| |||||||||||||||||||||    
T  50867991 agttagtggaataaagtgcccaatataatggattaatattt 50868031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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