View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_17 (Length: 320)
Name: NF11573_low_17
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 302
Target Start/End: Complemental strand, 44832968 - 44832667
Alignment:
| Q |
1 |
aattgtaaatgttagtgtattgaataatgatggattgtacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctgatagggga |
100 |
Q |
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||||||||||||||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44832968 |
aattgtaaatgttagtgtaatgaataattattgattatacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtacagaagctgatagggga |
44832869 |
T |
|
| Q |
101 |
aggatcaggatttaccatatttttgttgcgtgtattatgtcactgcaacgtgcaaccttgctcttctttgtgccttagtatgcaagaatggttatgaagg |
200 |
Q |
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| T |
44832868 |
aggatcaggatttaccatatttttgttgcgtgtattatgtcactgcaacgtgcaaccttgctcttctttgtgccttagtatgcaagaatggttatgaagg |
44832769 |
T |
|
| Q |
201 |
gacctagtaaggttgaaatgtgacctattagttttctttttatgaacaaaagatgtattaaagaatccagaaccagttcatgtctagatacacgttcagc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
44832768 |
gacctagtaaggttgaaatgtgacctattagttttctttttatgaacaaaagatgtattaaagaatctataaccagttcatgtctagatacacgttcagc |
44832669 |
T |
|
| Q |
301 |
at |
302 |
Q |
| |
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|| |
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| T |
44832668 |
at |
44832667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 92
Target Start/End: Complemental strand, 44868732 - 44868670
Alignment:
| Q |
30 |
atggattgtacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctg |
92 |
Q |
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| T |
44868732 |
atggattgtacctggaaggttaaattcttcctgagaagaccgttggtttgagtccagaagctg |
44868670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 38 - 92
Target Start/End: Complemental strand, 44858121 - 44858067
Alignment:
| Q |
38 |
tacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctg |
92 |
Q |
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| T |
44858121 |
tacctggaaggttaaattctttctgagaagagcgtttgcttgagtacaaaagctg |
44858067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 106
Target Start/End: Complemental strand, 44845039 - 44844968
Alignment:
| Q |
35 |
ttgtacctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctgataggggaaggatc |
106 |
Q |
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|||||||||||| ||||| ||||| |||||||| ||||||| |||||| ||||||| |||||||||||| |
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| T |
44845039 |
ttgtacctggaaggttaagttctttctgagaagagcgtttgtttgagtaaagaagctagcaggggaaggatc |
44844968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 44893921 - 44893882
Alignment:
| Q |
37 |
gtacctggaaagttaaattcttcctgagaagtgcgtttgc |
76 |
Q |
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| T |
44893921 |
gtacctggaaggttaaattcttcctgagaagagcgtttgc |
44893882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 12930587 - 12930640
Alignment:
| Q |
39 |
acctggaaagttaaattcttcctgagaagtgcgtttgcttgagtgcagaagctg |
92 |
Q |
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|||||||| ||||| ||||| || ||||| |||||||||||||| ||||||||| |
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| T |
12930587 |
acctggaaggttaagttctttctaagaagcgcgtttgcttgagtccagaagctg |
12930640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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