View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11573_low_18 (Length: 312)

Name: NF11573_low_18
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11573_low_18
NF11573_low_18
[»] chr5 (5 HSPs)
chr5 (18-147)||(35025292-35025422)
chr5 (200-288)||(35025144-35025232)
chr5 (54-133)||(37838339-37838419)
chr5 (27-133)||(37851668-37851775)
chr5 (19-133)||(37832816-37832931)
[»] chr7 (4 HSPs)
chr7 (18-133)||(36867020-36867136)
chr7 (238-288)||(16666815-16666865)
chr7 (238-288)||(17641185-17641235)
chr7 (237-287)||(9209639-9209689)
[»] chr6 (2 HSPs)
chr6 (200-260)||(16001114-16001174)
chr6 (200-288)||(26853394-26853482)
[»] chr4 (1 HSPs)
chr4 (200-260)||(33580363-33580423)


Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 35025422 - 35025292
Alignment:
Q  18 tagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctc 116  Q
    |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  35025422 tagtttaattacaagtccatcacaatattgcatcttatcactcattagcttaaacaagttcttattataaaagccaataacatctttaatggtcggcctc 35025323  T
Q  117 cttcgtggatccttctcctgctgtcatagca 147  Q
    |||||| ||||||||||||||||||||||||    
T  35025322 cttcgttgatccttctcctgctgtcatagca 35025292  T

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Target: chr5; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 200 - 288
Target Start/End: Complemental strand, 35025232 - 35025144
Alignment:
Q  200 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 288  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35025232 ccggtatgtcggagacatttgtatttgttatgctctcgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 35025144  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 54 - 133
Target Start/End: Complemental strand, 37838419 - 37838339
Alignment:
Q  54 atcactccttagcttaaacaagttcttattataaa-gccaataacatctttaatggtcggcctccttcgtggatccttctc 133  Q
    ||||| |||||||||||||| ||  |||||||||| | ||||||||||||| |||||||||||||||||||||||||||||    
T  37838419 atcacaccttagcttaaacaggtagttattataaaagtcaataacatctttcatggtcggcctccttcgtggatccttctc 37838339  T

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Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 133
Target Start/End: Complemental strand, 37851775 - 37851668
Alignment:
Q  27 tacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctccttcgtgga 125  Q
    |||||||||||||| ||||||||||| ||||  ||| | |||||||| ||||||||||| |||||| |||||| |||| ||||| | |||| ||||||||    
T  37851775 tacaagtccatcaccatattgcacctcatcatacctcatcttaaacaggttcttattataaaagcctataacaactttcatggttgtcctctttcgtgga 37851676  T
Q  126 tccttctc 133  Q
    ||||||||    
T  37851675 tccttctc 37851668  T

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Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 133
Target Start/End: Complemental strand, 37832931 - 37832816
Alignment:
Q  19 agtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttatt-ataaagccaataacatctttaatggtcggcctcc 117  Q
    |||||||||  ||||||||| | |||||| |||| ||||| ||| |||||||||||||| ||||| | ||| | ||||||| |||| |||||||||||      
T  37832931 agtttaattgtaagtccatcgccatattgaacctcatcacacctcagcttaaacaagttgttattaaaaaaacgaataacacctttcatggtcggcctat 37832832  T
Q  118 ttcgtggatccttctc 133  Q
     |||||||||||||||    
T  37832831 ctcgtggatccttctc 37832816  T

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Target: chr7 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 36867136 - 36867020
Alignment:
Q  18 tagtttaattacaagtccatcacaatattgcaccttatcactccttagcttaaacaagttcttattat-aaagccaataacatctttaatggtcggcctc 116  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||| |||||| |||| ||||||||||||| ||||| ||||||    
T  36867136 tagtttaattacaagtccatcacaatatttcaccttatcacacctcagcttaaacaagttcgtattataaaaggcaataacatctttcatggttggcctc 36867037  T
Q  117 cttcgtggatccttctc 133  Q
    |||||||||||||||||    
T  36867036 cttcgtggatccttctc 36867020  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 16666815 - 16666865
Alignment:
Q  238 agtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 288  Q
    |||||| |||||| |||||||||||||| |||||||||| |||||||||||    
T  16666815 agtttgctgtgcgtcttgtacactctcgttttcaataaaatttgctgattt 16666865  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 288
Target Start/End: Original strand, 17641185 - 17641235
Alignment:
Q  238 agtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 288  Q
    |||||| |||||| |||||||||||||| |||||||||| |||||||||||    
T  17641185 agtttgctgtgcgtcttgtacactctcgttttcaataaaatttgctgattt 17641235  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 287
Target Start/End: Complemental strand, 9209689 - 9209639
Alignment:
Q  237 gagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgatt 287  Q
    |||||||||||||  |||||||||||||||  | |||||||||||||||||    
T  9209689 gagtttgttgtgcatcttgtacactctcgacgtgaataaattttgctgatt 9209639  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 16001114 - 16001174
Alignment:
Q  200 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacac 260  Q
    ||||||||||| |||||||||||||||||||||||| |||||||||||||  |||||||||    
T  16001114 ccggtatgtcgtagacgtttgtatttgttatgctctcgagtttgttgtgcttcttgtacac 16001174  T

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Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 288
Target Start/End: Original strand, 26853394 - 26853482
Alignment:
Q  200 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacactctcgatttcaataaattttgctgattt 288  Q
    ||||||||||||||||  |||||| ||||   |||| |||||||||||||| | |||||||||||||| |||||||| |||||||||||    
T  26853394 ccggtatgtcggagacaattgtatatgtttgcctctcgagtttgttgtgcgtcctgtacactctcgatctcaataaaatttgctgattt 26853482  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 200 - 260
Target Start/End: Complemental strand, 33580423 - 33580363
Alignment:
Q  200 ccggtatgtcggagacgtttgtatttgttatgctcttgagtttgttgtgcgccttgtacac 260  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||||  |||||||||    
T  33580423 ccggtatgtcggagacgcttgtatttgttatgctctcgagtttgttgtgcttcttgtacac 33580363  T

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