View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_2 (Length: 616)
Name: NF11573_low_2
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 221 - 601
Target Start/End: Complemental strand, 40960196 - 40959815
Alignment:
| Q |
221 |
agtttataatattattcaataaccaactgattagtgtgtgtataatttactctgttaagctctttaaaaa-attaacttacttccacatttgcctgtagg |
319 |
Q |
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| T |
40960196 |
agtttataatattattcaataaccaactgattagtgtgtgtataatttactctattaagctctttaaaaatattaacttacttccacatttgcctgtagg |
40960097 |
T |
|
| Q |
320 |
aatatcttgcaattcgcaatttcgagctacattcaaagctttgtcaatgctgatattttgcataagacgaggagtcacatattggcagtaacatgagaca |
419 |
Q |
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| T |
40960096 |
aatatcttgcaattcgcaatttcgagctacattcaaagctttgtcaatgctgatattttgcataagacgaggagtcacatattggcagtaacatgagaca |
40959997 |
T |
|
| Q |
420 |
tcaacaccgttcaatgcattacaacataaatctgatggtggcaaagttggcccatcctttaagacaaaaggtttacaatggtatacaatgccattcaagt |
519 |
Q |
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| T |
40959996 |
tcaacaccgttcaatgcattacaacataaatctgatggtggcaaagttggcccatcctttaagacaaaaggtttacaatgatatacaatgccattcaagt |
40959897 |
T |
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| Q |
520 |
caccaccacattcaaattgaccagaaattcctaccactaagatgcttacggcaagaactaatgttgtaaagtgtaagtatct |
601 |
Q |
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| T |
40959896 |
caccaccacattcaaattgaccagaaattcctaccactaagatgcttacggcaagaactaatgttgtaaagtgtaagtatct |
40959815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 40960471 - 40960267
Alignment:
| Q |
11 |
caaagggagagagagcataaatcagtaattaagaagacgcatgtacatcatgcttttcttttagaatacatgtcatgttttattttattttattcatgta |
110 |
Q |
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| T |
40960471 |
caaagggagagagagcataaatcagtaattaagaagacgcatgtacatcatgcttttcttttagaatacatgtcatgttttattttattttattcatgta |
40960372 |
T |
|
| Q |
111 |
tataagttgcatgcgcccagcccaaatttttgcatcaagcctttggagaagcaggaggaggattataacctgaaagagtcacagttatactaaacatgat |
210 |
Q |
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| T |
40960371 |
tataagttgcatgcgcccagcccaaatttttgcatcaagcctttggagaagtaggaggaggattataacctgaaagagtcacagttatactaaacatgat |
40960272 |
T |
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| Q |
211 |
tagca |
215 |
Q |
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||||| |
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| T |
40960271 |
tagca |
40960267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 275 - 566
Target Start/End: Complemental strand, 40953661 - 40953367
Alignment:
| Q |
275 |
ttaagctctttaaaaa--att-aacttacttccacatttgcctgtaggaatatcttg-caattcgcaatttcgagctacattcaaagctttgtcaatgct |
370 |
Q |
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|||||||||||||||| ||| |||||||||||||| ||| | |||||||||||||| ||||| ||||| || ||| | |||||||||||| |||||||| |
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| T |
40953661 |
ttaagctctttaaaaataattgaacttacttccacacttgtccgtaggaatatcttggcaatt-gcaatatccagcgatattcaaagctttttcaatgct |
40953563 |
T |
|
| Q |
371 |
gatattttgcataagacgaggagtcacatattggcagtaacatgagacatcaacaccgttcaatgcattacaacataaatctgatggtggcaaagttggc |
470 |
Q |
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|||||| || ||| |||||| |||||||||||||||||| || ||| | | || |||||||| |||||||| | ||||||||| | | |||| |
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| T |
40953562 |
gatattacgctcaagtttaggagtgacatattggcagtaacataaggcattagctccattcaatgctgtacaacattcctttgatggtggaacatatggc |
40953463 |
T |
|
| Q |
471 |
ccatcctttaagacaaaaggtttacaatggtatacaatgccattcaagtcaccaccacattcaaattgaccagaaattcctaccactaagatgctt |
566 |
Q |
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| T |
40953462 |
ccttcctttttcacaaaaggtttacaatgatatacaattccattcaagtcaccaccacattcaaattgaccagaaattcctaacactaagatgctt |
40953367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 172
Target Start/End: Complemental strand, 40953798 - 40953722
Alignment:
| Q |
93 |
ttttattttattcatgtatataagttgcatgcgcccagcccaaatttttgcatcaagcctttggagaagcaggaggagga |
172 |
Q |
| |
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||||||||||||||| |||||||||| |||||||| ||||| |||||||||||||||||| |||||| |||| ||||| |
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| T |
40953798 |
ttttattttattcatatatataagttccatgcgcc---cccaattttttgcatcaagcctttagagaaggaggatgagga |
40953722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 293 - 436
Target Start/End: Complemental strand, 40945506 - 40945363
Alignment:
| Q |
293 |
taacttacttccacatttgcctgtaggaatatcttgcaattcgcaatttcgagctacattcaaagctttgtcaatgctgatattttgcataagacgagga |
392 |
Q |
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||||||||||||||| ||| |||||||||||| |||||||| |||| || ||||| | |||||||||||| |||||||| | | || || |||| |
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| T |
40945506 |
taacttacttccacacttgtctgtaggaatattttgcaattggcaagttttggctacgtacaaagctttgtctatgctgattatactctcaatactagga |
40945407 |
T |
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| Q |
393 |
gtcacatattggcagtaacatgagacatcaacaccgttcaatgc |
436 |
Q |
| |
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|||||||||| ||||||||||| |||| | |||| |||||||| |
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| T |
40945406 |
gtcacatatttgcagtaacatggaacattagcacctttcaatgc |
40945363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 137 - 192
Target Start/End: Complemental strand, 40954279 - 40954224
Alignment:
| Q |
137 |
tttttgcatcaagcctttggagaagcaggaggaggattataacctgaaagagtcac |
192 |
Q |
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||||||||| ||| ||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
40954279 |
tttttgcataaagtcttcggagaagcaggaggaggattataacctgaaagaatcac |
40954224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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