View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_20 (Length: 272)
Name: NF11573_low_20
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Complemental strand, 48943521 - 48943266
Alignment:
| Q |
1 |
tcaaacaaaacttcaaagatatatttatcatgaaaatcagtgcaggtacaaattccaatcaaacaactaaacaaacacatacttgtaagcgtttctggaa |
100 |
Q |
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| T |
48943521 |
tcaaacaaaacttcaaagatatatttatcatgaaaatcagtgcaggtacaaattccaatcaaacaactaaacaaacacatacttgtaagcgtttctggaa |
48943422 |
T |
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| Q |
101 |
ctaggctttccgttgaactccaaaaggccactcaaatgaagccgaggtgacgctgatagctgaccagcaagaacattgagcaatgttgtcttccctgaac |
200 |
Q |
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| T |
48943421 |
ctaggctttccattgaactccaaaaggccactcaaatgaagccgaggtgacgctgatagctgaccagcaagaacattgagcaatgttgtcttccctgaac |
48943322 |
T |
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| Q |
201 |
ctgaaggtcccattattgctaataatcttcccggttttgcttctccactcagattt |
256 |
Q |
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| T |
48943321 |
ctgaaggtcccattattgctaataatcttcccggttttgcttctccactcagattt |
48943266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 113 - 256
Target Start/End: Original strand, 28637859 - 28638002
Alignment:
| Q |
113 |
ttgaactccaaaaggccactcaaatgaagccgaggtgacgctgatagctgaccagcaagaacattgagcaatgttgtcttccctgaacctgaaggtccca |
212 |
Q |
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|||||||||||||||||||||| |||||||||||| || || | ||| ||||| |||||||| |||| ||| |||||||| |||||| ||||||| ||| |
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| T |
28637859 |
ttgaactccaaaaggccactcagatgaagccgaggcgatgcagccagcagaccaacaagaacaatgagaaatattgtcttctctgaacttgaaggttcca |
28637958 |
T |
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| Q |
213 |
ttattgctaataatcttcccggttttgcttctccactcagattt |
256 |
Q |
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| T |
28637959 |
ttatcgttaataatcttccaggttttgctactccgctcacattt |
28638002 |
T |
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