View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11573_low_21 (Length: 263)

Name: NF11573_low_21
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11573_low_21
NF11573_low_21
[»] chr7 (1 HSPs)
chr7 (5-245)||(46631293-46631533)
[»] chr1 (1 HSPs)
chr1 (1-245)||(15767410-15767672)
[»] chr3 (2 HSPs)
chr3 (171-240)||(39905908-39905977)
chr3 (171-240)||(25019842-25019911)
[»] chr5 (3 HSPs)
chr5 (175-240)||(22382063-22382128)
chr5 (171-240)||(42256987-42257056)
chr5 (170-245)||(40887448-40887523)
[»] chr2 (1 HSPs)
chr2 (191-240)||(17481548-17481597)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 5 - 245
Target Start/End: Original strand, 46631293 - 46631533
Alignment:
Q  5 aatgtgttggttttccatttatttatacaatattggttgaattatattttgactggtaccggaacatctatcttttgttaaatggatattgaacatcaca 104  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46631293 aatgtgtttgttttccatttatttatacaatattggttgaattatattttgactggtaccggaacatctatcttttgttaaatggatattgaacatcaca 46631392  T
Q  105 gggtgagtgaacttcaatagtgtagcttatgatagaagatatccatgatggatggaaccattgcaatatggtttgatatcttatagctattaatgaaata 204  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46631393 cggtgagtgaacttcaatagtgtagcttatgatagaagatatccatgatggatggaaccattgcaatatggtttgatatcttatagctattaatgaaata 46631492  T
Q  205 attggtagaatcattgtaacccgacattaaagggtaagtct 245  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  46631493 attggtagaatcattgtaacccgacattaaagggtaagtct 46631533  T

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Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 15767672 - 15767410
Alignment:
Q  1 ttgtaatgtgttggttttccatttatttatacaatattggttgaattatattttgactggtaccggaacatctatcttttgttaaatggatattgaacat 100  Q
    |||| ||||||||||||||| || |||||||||| || |||||| |||||||||||| ||||||  || |||||||||||||||||||||||||||||||    
T  15767672 ttgttatgtgttggttttccgttcatttatacaacataggttgagttatattttgacgggtaccaaaatatctatcttttgttaaatggatattgaacat 15767573  T
Q  101 cacagggtgagtgaacttcaatagtgtagcttatg--atagaagatatccatgatggatggaaccattgc----------------aatatggtttgata 182  Q
     |||  | |||||  ||| ||||| ||||| ||||  |||||||| ||||||||||||||||||||||||                ||||||||||||||    
T  15767572 tacaccgggagtgtgcttaaatagcgtagcatatgatatagaagagatccatgatggatggaaccattgcaactttttcatggtaaaatatggtttgata 15767473  T
Q  183 tcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggtaagtct 245  Q
    |||||||||| || | ||| ||||| |||||||| ||||||| | |||||| |||||||||||    
T  15767472 tcttatagcttttgacgaattaatttgtagaatcgttgtaactcaacattatagggtaagtct 15767410  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 39905908 - 39905977
Alignment:
Q  171 tatggtttgatatcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggta 240  Q
    |||||||||||| ||||| |||||| |||||| ||||||||||| ||||||||||| |||| ||||||||    
T  39905908 tatggtttgataccttatggctattcatgaaagaattggtagaaccattgtaaccctacatgaaagggta 39905977  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 240
Target Start/End: Complemental strand, 25019911 - 25019842
Alignment:
Q  171 tatggtttgatatcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggta 240  Q
    |||||||||||| |||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||||    
T  25019911 tatggtttgataccttatgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggta 25019842  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 175 - 240
Target Start/End: Complemental strand, 22382128 - 22382063
Alignment:
Q  175 gtttgatatcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggta 240  Q
    |||||||| |||||  ||||| |||||| ||||||||||| ||||||||||| |||| ||||||||    
T  22382128 gtttgataccttatgactattcatgaaagaattggtagaaccattgtaaccctacatgaaagggta 22382063  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 240
Target Start/End: Original strand, 42256987 - 42257056
Alignment:
Q  171 tatggtttgatatcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggta 240  Q
    |||||||||||| |||||| ||||| |||||| ||||| ||||  ||||||||||| |||| ||||||||    
T  42256987 tatggtttgataccttataactattcatgaaagaattgatagagccattgtaaccctacatgaaagggta 42257056  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 245
Target Start/End: Complemental strand, 40887523 - 40887448
Alignment:
Q  170 atatggtttgatatcttatagctattaatgaaataattggtagaatcattgtaacccgacattaaagggtaagtct 245  Q
    ||||||||||||| |||||  ||||| |||||| ||||||||||| | ||||||||| |||| ||| |||| ||||    
T  40887523 atatggtttgataccttatgactattcatgaaagaattggtagaaccgttgtaaccctacatgaaaaggtaggtct 40887448  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 191 - 240
Target Start/End: Complemental strand, 17481597 - 17481548
Alignment:
Q  191 ctattaatgaaataattggtagaatcattgtaacccgacattaaagggta 240  Q
    ||||| |||||| ||||||||||| ||||||||||| |||| ||||||||    
T  17481597 ctattcatgaaagaattggtagaaccattgtaaccctacatgaaagggta 17481548  T

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