View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_23 (Length: 251)
Name: NF11573_low_23
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 44837946 - 44837708
Alignment:
| Q |
12 |
atgaagaaagtgagttaattgagaagatgggttcnnnnnnngcacttatgtgtcatcaaaaacttccttttaatcaagttatgcaatttactggaataca |
111 |
Q |
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| T |
44837946 |
atgaagaaagtgagttaattgagaagatgggttcaaaaaaagcacttatgtgtcatcaaaaacttccttttaatcaagttatgcaatttactggaataca |
44837847 |
T |
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| Q |
112 |
agctatagttgaacatcttaagtttgagactaaaattcatctaatagattttgatataaaaagtggggtccagtgcatagctttgatgcaagcactttct |
211 |
Q |
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| T |
44837846 |
agctatagttgaacatgttaagtttgagactaaaattcatctaatagattttgatataaaaagtggggtccagtgcatagctttgatgcaagcactttct |
44837747 |
T |
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| Q |
212 |
gagagacaagattgcatagttgaaatttttaagctaagt |
250 |
Q |
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| T |
44837746 |
gagagacaggattgcatagttgaaatttttaagctaagt |
44837708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 38927372 - 38927307
Alignment:
| Q |
62 |
tgtcatcaaaaacttccttttaatcaagttatgcaatttactggaatacaagctatagttgaacat |
127 |
Q |
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| T |
38927372 |
tgtcatcaaaaaattcctttcaatcaagtaatgcaatttgctggtgtacaagctatagtggaacat |
38927307 |
T |
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