View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_26 (Length: 247)
Name: NF11573_low_26
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_26 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 47694477 - 47694702
Alignment:
| Q |
19 |
aattaggacatcctaaaacatatcactaccttaaccagtcgaaatgctatgaattggctgatataagcgatgctcgtgagtatcttgccaccaggagagc |
118 |
Q |
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| T |
47694477 |
aattaggacatcctaaaacatatcactaccttaaccagtcgaaatgctatgaattggctgatataagcgatgctcgtgagtatcttgccaccaggagagc |
47694576 |
T |
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| Q |
119 |
tatggatatcgttggaataagccaaaaagagcaggtttttcttgtcatgagtgtgaattcaga-----ttannnnnnngttataatatggaattattaga |
213 |
Q |
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| T |
47694577 |
tatggatatcgttggaataagccaaaaagagcaggtttttcttgtcatgagtgtgaattcagattttttttttcttctgttataatatggaattattaga |
47694676 |
T |
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| Q |
214 |
ttcttacctctttacttttctctgct |
239 |
Q |
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|||||||||||||||||||||||||| |
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| T |
47694677 |
ttcttacctctttacttttctctgct |
47694702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 35831393 - 35831258
Alignment:
| Q |
19 |
aattaggacatcctaaaacatatcactaccttaaccagtcgaaatgctatgaattggctgatataagcgatgctcgtgagtatcttgccaccaggagagc |
118 |
Q |
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|||||||| |||||||| | | |||||||||||||||||| ||||||||||| |||||||| ||| ||||||| ||||||||| |||||| | ||||| |
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| T |
35831393 |
aattaggaaatcctaaatcgtttcactaccttaaccagtcacaatgctatgaactggctgatgtaaatgatgctcatgagtatctcgccacccgtagagc |
35831294 |
T |
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| Q |
119 |
tatggatatcgttggaataagccaaaaagagcaggt |
154 |
Q |
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| T |
35831293 |
tatgggtattgttggaataggtcacaaagatcaggt |
35831258 |
T |
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