View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11573_low_28 (Length: 241)
Name: NF11573_low_28
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 5667137 - 5666899
Alignment:
| Q |
1 |
ataattttattttaatgagttaattagatatgagggttttttatccttaggtttttagaacataagttgacaacatcatagttcttgaactcatttttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5667137 |
ataattttattttaatgagttaattagatatgaggtttttttatccttaggtttttagaatataagttgacaacatcatagttcttgaactcatttttat |
5667038 |
T |
|
| Q |
101 |
aacaaattaatctataaaatatttctaaatgagttaactagacttgagannnnnnnaatccttgtttttagaacacaagtgagacaacctcgtagggcgc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5667037 |
aacaaattaatctataaaatatttctaaatgagttaactagacttgagatttttttaatccttgtttttagaacacaagtgagacaacctcgtagggcgc |
5666938 |
T |
|
| Q |
201 |
cttctagggtaggagagcttaatagatctcccaccgtga |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5666937 |
cttctagggtaggagagcttaatagatctcccaccgtga |
5666899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 117
Target Start/End: Complemental strand, 5667183 - 5667134
Alignment:
| Q |
68 |
tgacaacatcatagttcttgaactcatttttataacaaattaatctataa |
117 |
Q |
| |
|
||||||| |||||||||||||||||| |||| ||| |||||| ||||||| |
|
|
| T |
5667183 |
tgacaacttcatagttcttgaactcaattttgtaaaaaattagtctataa |
5667134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 44122664 - 44122706
Alignment:
| Q |
196 |
ggcgccttctagggtaggagagcttaatagatctcccaccgtg |
238 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
44122664 |
ggcgccttctagggtgggagagcttaataggtctcccaccgtg |
44122706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Complemental strand, 12846903 - 12846865
Alignment:
| Q |
196 |
ggcgccttctagggtaggagagcttaatagatctcccac |
234 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
12846903 |
ggcgccttctatggtgggagagcttaatagatctcccac |
12846865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 239
Target Start/End: Complemental strand, 28225088 - 28225044
Alignment:
| Q |
195 |
gggcgccttctagggtaggagagcttaatagatctcccaccgtga |
239 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| |||||||| |
|
|
| T |
28225088 |
gggcgccttctagggtgggagagcttaataggtctctcaccgtga |
28225044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 630290 - 630255
Alignment:
| Q |
88 |
aactcatttttataacaaattaatctataaaatatt |
123 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
630290 |
aactgatttttataacaaattaatctataaaatatt |
630255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 32568273 - 32568228
Alignment:
| Q |
194 |
agggcgccttctagggtaggagagcttaatagatctcccaccgtga |
239 |
Q |
| |
|
|||||| |||||||||| |||||||||||||| |||||||| |||| |
|
|
| T |
32568273 |
agggcgtcttctagggtgggagagcttaataggtctcccactgtga |
32568228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University