View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11573_low_30 (Length: 235)
Name: NF11573_low_30
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 13897906 - 13898114
Alignment:
| Q |
22 |
accaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgat |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13897906 |
accaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgat |
13898005 |
T |
|
| Q |
122 |
tctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13898006 |
tctaagacaggtatgagcctattgttcacaagctcaaaaattgacttaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcc |
13898105 |
T |
|
| Q |
222 |
tttgcttct |
230 |
Q |
| |
|
|||| |||| |
|
|
| T |
13898106 |
tttgtttct |
13898114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 25 - 230
Target Start/End: Complemental strand, 13887295 - 13887090
Alignment:
| Q |
25 |
aggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgattct |
124 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| ||||||||| ||||| ||| |
|
|
| T |
13887295 |
aggatcaacatcaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatcgatggaaaccgatttcttcaacgatgaatct |
13887196 |
T |
|
| Q |
125 |
aagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttccttt |
224 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| | ||| ||| ||||||| |||||||| ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
13887195 |
aagacaggtatgagcctattgttcacaagctcaaacaatgaatcagttgttaatttcctaaactttgttgaatgaaactcgatactcgctgttttccttt |
13887096 |
T |
|
| Q |
225 |
gcttct |
230 |
Q |
| |
|
| |||| |
|
|
| T |
13887095 |
gtttct |
13887090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 22 - 230
Target Start/End: Original strand, 1034963 - 1035171
Alignment:
| Q |
22 |
accaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatctattgcaacatttttcttcaatgatgat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| || |
|
|
| T |
1034963 |
accaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcagcaaaatatcttgaagatctatggcaacatttttcttcaatgataat |
1035062 |
T |
|
| Q |
122 |
tctaagacaggtatgagcctattgttcacaagctcaaaaattgactcaattgttaacttcctaaaatttgtcgaatgaaactcgatactcgctattttcc |
221 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
1035063 |
tctaagactggtatgagcctattgttcacaagctcaaaaattgactcatttgttaactttctaaaatttgtcgaatgaaactcgatactagctattttcc |
1035162 |
T |
|
| Q |
222 |
tttgcttct |
230 |
Q |
| |
|
|||| |||| |
|
|
| T |
1035163 |
tttgtttct |
1035171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 28667243 - 28667315
Alignment:
| Q |
22 |
accaggatcaacaccaaaagctatcatacaaacattatcaaaagttagtctcaacaaaatatcttgaagatct |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| || | ||| |||||||||||| |
|
|
| T |
28667243 |
accaggatcaacaccaaaagctatcatacaaacattgtcaaaagttagtcttaaaagaatgtcttgaagatct |
28667315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University