View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_32 (Length: 223)
Name: NF11573_low_32
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 24 - 209
Target Start/End: Complemental strand, 40974849 - 40974664
Alignment:
| Q |
24 |
agtcattcaatggttgaggctccaccttcacttccacctgtgattgctcatcatcatctgcattctccacctcttcctcctcctcctccatatggtgctt |
123 |
Q |
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| T |
40974849 |
agtcattcaatggttgaggctccaccttcacttccacctgtgattgctcatcatcatctgcattctccacctctgcctcctcctcctccatatggtactt |
40974750 |
T |
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| Q |
124 |
ctcgggctggggctcaggctcgttcacctgagatggttcagcaccatcaacacggcatcccccttcctctccctctccccctatgc |
209 |
Q |
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| T |
40974749 |
ctcgggctggggctcaggctcgttcacctgagatggttcatcaccatcaacacggcatcccccttcctctccctctcctcctatgc |
40974664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 99 - 152
Target Start/End: Original strand, 24142906 - 24142959
Alignment:
| Q |
99 |
cctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacct |
152 |
Q |
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| T |
24142906 |
cctcctcctcctccatatggtgcttctcgggctgcgtctcaggctcgtgcacct |
24142959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 1771619 - 1771533
Alignment:
| Q |
68 |
tgctcatcatcatctgcattctccacctct--tcctcctcctcctccatatggtgcttctcgggctggggctcaggctcgttcacct |
152 |
Q |
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| T |
1771619 |
tgctcatcatcatatgtgttctccacctccactcctcctcctcctccatataatattgctcgggctggggctcaggctcgtacacct |
1771533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 9030454 - 9030413
Alignment:
| Q |
71 |
tcatcatcatctgcattctccacctcttcctcctcctcctcc |
112 |
Q |
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| T |
9030454 |
tcatcatcatctgcattctccacctccacatcctcctcctcc |
9030413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 42229273 - 42229179
Alignment:
| Q |
67 |
ttgctcatcatcatctgcattctccacctcttcctcct---cctcctccatatggtgcttctcgggctggggctcaggctcgttcacctgagatg |
158 |
Q |
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| T |
42229273 |
ttgctcatcatcattttcattcttcagctccacctcctattcctccttcacatggtgctactcaggttggggctcaagcttgttcacctgagatg |
42229179 |
T |
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