View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_4 (Length: 479)
Name: NF11573_low_4
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 46 - 464
Target Start/End: Complemental strand, 51417026 - 51416613
Alignment:
| Q |
46 |
aaaacatatttacatagttgaattgtttttgttggtgaattcaattttctttttgttaccaaaagagcaatcatttgaatttaaaaagggaaggttaatt |
145 |
Q |
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| T |
51417026 |
aaaacatatttacatagttgaattgtttttgttggtgaattcaattttctttttgttaccaaaagagcaatcatttgaatttaaaaagggaaggttaatg |
51416927 |
T |
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| Q |
146 |
aaacaacgtcgtaaagtttaaaaagctagctgttgatacttgataaaatgcataacagtaaagtacagtacagtacgaatatccattgcaggtcaattat |
245 |
Q |
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| T |
51416926 |
aaacaacgtcgtaaagtttaaaaagctagctgttgatacttgataaaatgcataacagta-----cagtacagtacgaatatccattgcaggtcaattat |
51416832 |
T |
|
| Q |
246 |
attggtcaaataatagcgtaccctacaacaactacagatatctgatcttgaataatatgattcacctgcgacatgcacatgatgtgctatctcactcaat |
345 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
51416831 |
attggtcaaataataacgtaccctacaacaactacagatatctgatcttgaataatatgattcacctgctacatgcacatgatgtgctatctcactcaat |
51416732 |
T |
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| Q |
346 |
cagcattaacaatgatgatgatccaaccatctctgtgaactcctctgccgcctggtcaacatgaaactctttctgctcctccgccctctccctcgtcatc |
445 |
Q |
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| T |
51416731 |
cagcattaacaatgatgatgatccaaccatctctgtgaactcctctgccgcctggtcaacatgaaagtctttctgctcctccgccctctccctcgtcatc |
51416632 |
T |
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| Q |
446 |
tttacgcgcctccattcat |
464 |
Q |
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| T |
51416631 |
tttacgcgcctccattcat |
51416613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 381 - 419
Target Start/End: Complemental strand, 51413666 - 51413628
Alignment:
| Q |
381 |
tgaactcctctgccgcctggtcaacatgaaactctttct |
419 |
Q |
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||||||| || |||||||||||||||||||||||||||| |
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| T |
51413666 |
tgaactcttccgccgcctggtcaacatgaaactctttct |
51413628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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