View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11573_low_9 (Length: 402)
Name: NF11573_low_9
Description: NF11573
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11573_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 15 - 388
Target Start/End: Original strand, 3447388 - 3447762
Alignment:
| Q |
15 |
aaaaggaccaactcagcaattcaaagcaaccaaatccaagacaaggccaatattcagaaaaggccgacttaacaatcaaaacattcaaatgcaggaacag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3447388 |
aaaaggaccaactcagcaattcaaagcaaccaaatccaagacaaggccaatattcagaaaaggccgacttaacaatcaaaacattcaaatgcaggaacag |
3447487 |
T |
|
| Q |
115 |
tttaggacataaagtgcactcaaaacaatcaaaattcagttgttatatcaaagcatcaagctacctgtt-cggttgaaatcaattttgaggatagcctat |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
3447488 |
tttaggacataaagtgcactcaaaacaatcaaaattcagttgttatatcaaagcatcaagctacctgtttcggttgaaatcaattttgaggatagcctaa |
3447587 |
T |
|
| Q |
214 |
gtattagattttacattttagactcctcaaattgatttcaaccgaagtggattgtgtgatgcttttggataatccctgttttgtggcttagagacctcta |
313 |
Q |
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||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
3447588 |
gtattagattttacattttagactcgtcaaattgatctcaaccgaagtggattgtgtgatgcttttgaataatccatgttttgtggcttagagacctcta |
3447687 |
T |
|
| Q |
314 |
aaatcacctttgttacatgttcgccgacaatcttatatttgatattcgttaacaatgacaaatatctgtcctctt |
388 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3447688 |
aaatcacctttgttacatgttcgccgacaatcttatatttgatattcgttaacaacgacaaatatctgtcctctt |
3447762 |
T |
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