View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11574_high_14 (Length: 385)

Name: NF11574_high_14
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11574_high_14
NF11574_high_14
[»] chr8 (18 HSPs)
chr8 (30-377)||(13164355-13164702)
chr8 (143-361)||(14403244-14403462)
chr8 (54-377)||(6313517-6313855)
chr8 (140-377)||(5624520-5624757)
chr8 (141-377)||(5598328-5598564)
chr8 (54-377)||(5636711-5637049)
chr8 (54-377)||(5568658-5568993)
chr8 (140-377)||(5547499-5547742)
chr8 (140-377)||(5562331-5562556)
chr8 (57-361)||(32632664-32632971)
chr8 (143-318)||(12190360-12190532)
chr8 (143-318)||(12434788-12434960)
chr8 (140-377)||(5572781-5573002)
chr8 (163-318)||(12178685-12178837)
chr8 (163-318)||(12423113-12423265)
chr8 (54-143)||(5598226-5598315)
chr8 (77-117)||(5562612-5562652)
chr8 (71-143)||(14403477-14403549)
[»] scaffold0363 (2 HSPs)
scaffold0363 (143-361)||(15391-15609)
scaffold0363 (71-143)||(15304-15376)
[»] chr2 (1 HSPs)
chr2 (141-360)||(19495895-19496108)


Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 377
Target Start/End: Complemental strand, 13164702 - 13164355
Alignment:
Q  30 aaaatattgtattagaaagtggtgaaaacctgtatacggtggaatggaatccagataaattagatgcttcgaaaagagcattcttccaatttcgcaacat 129  Q
    |||||||| | || |||||| ||||||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  13164702 aaaatattatgttggaaagtagtgaaaacctgtatgtggtagaatggaatccagataaattagatgcttcgaaaagagcattcttccaattttgcaacat 13164603  T
Q  130 cttatcatcattgtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacg 229  Q
    |||||  ||| ||||||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13164602 cttatggtcaatgtgttttgccaaagcagtgccgtaactgccagtctgcttccgaacatgtgaagggtcaacatggtagaacacaggaataacaacaacg 13164503  T
Q  230 ttatcatcttccttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaa 329  Q
    ||||||| ||| |||||||| |||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  13164502 ttatcattttcattgttgttgctacactccattatttgaactagttcgttcaaacaccatgttgaaaatgcgtagttctctgagaacacgacaagaaaaa 13164403  T
Q  330 gagtggattcattgattgctttcacaagttctaccgaaacttcatctc 377  Q
    |||||||||||||||||||||||  ||||||| || ||||||||||||    
T  13164402 gagtggattcattgattgctttctgaagttctccccaaacttcatctc 13164355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 143 - 361
Target Start/End: Complemental strand, 14403462 - 14403244
Alignment:
Q  143 tgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttcct 242  Q
    |||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||||||| |||||||| |    
T  14403462 tgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatcttcat 14403363  T
Q  243 tgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattcatt 342  Q
    | |||||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||  ||    
T  14403362 ttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattgttt 14403263  T
Q  343 gattgctttcacaagttct 361  Q
    ||||||||| |||||||||    
T  14403262 gattgctttaacaagttct 14403244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 54 - 377
Target Start/End: Original strand, 6313517 - 6313855
Alignment:
Q  54 aaaacctgtatacggtggaatggaatccagataaattagatgcttcgaaaagagcattcttccaatttcgcaacatcttatcatcatt------------ 141  Q
    |||||||||||  ||||||||| || ||||| ||||||| |||||  ||||||||||||||||||||| ||| |||||||||||||||                
T  6313517 aaaacctgtatgtggtggaatgaaaaccagacaaattagctgcttgaaaaagagcattcttccaattttgcatcatcttatcatcatttttgccttgttt 6313616  T
Q  142 ---gtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatct 238  Q
       ||||||   |||||||||||| ||||| |||||||||||||| || | |||||||||||||||||||||||| |||||||||||||| || ||||||    
T  6313617 cttgtgtttaatcaacgcagtgccataactaccagtctgcttccgcacgtgtgaagggtcaacatggtagaacactggaataacaacaaccttgtcatct 6313716  T
Q  239 tccttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggatt 338  Q
    || || ||||||| |||||||||||||| ||  |||||||||||||||||||||||||| || ||||| || |||||||| |||||||| | ||||||||    
T  6313717 tcatttttgttacaacactccattatttcaacaagttcgttcaaacaccatgttgaagaggcatagttttccgagaacaccacaagaaatatagtggatt 6313816  T
Q  339 cattgattgctttcacaagttctaccgaaacttcatctc 377  Q
      |||||||||||||| ||||||||| ||||||||||||    
T  6313817 gtttgattgctttcactagttctacccaaacttcatctc 6313855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 140 - 377
Target Start/End: Complemental strand, 5624757 - 5624520
Alignment:
Q  140 ttgtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatctt 239  Q
    |||||||| ||||  |||||||| ||||| || ||||| ||||| || | ||||||||||||||||||||||||||||||||||||||| || |||||||    
T  5624757 ttgtgtttagccagagcagtgccataacttccggtctgtttccgcacttgtgaagggtcaacatggtagaacacaggaataacaacaacattgtcatctt 5624658  T
Q  240 ccttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattc 339  Q
    | || |||||| |||||||||||||||||| |||||||||||||||||||||||| || ||||||||||| |||||||| |||||| | ||||||||||     
T  5624657 catttttgttattacactccattatttgaacgagttcgttcaaacaccatgttgatgacgcgtagttctccgagaacaccacaagatacagagtggattg 5624558  T
Q  340 attgattgctttcacaagttctaccgaaacttcatctc 377  Q
     ||||||||||||||||||||| || ||||||||||||    
T  5624557 tttgattgctttcacaagttctgcccaaacttcatctc 5624520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 141 - 377
Target Start/End: Original strand, 5598328 - 5598564
Alignment:
Q  141 tgtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttc 240  Q
    ||||||||||||  |||| |||||||  ||| || || ||||| || | |||||||||||||||||| || |||||||| ||||||||||| ||||| ||    
T  5598328 tgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcctc 5598427  T
Q  241 cttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattca 340  Q
     || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| |||||||||||     
T  5598428 atttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggattct 5598527  T
Q  341 ttgattgctttcacaagttctaccgaaacttcatctc 377  Q
    ||||||||||| |||||||||  | ||||||||||||    
T  5598528 ttgattgctttaacaagttctgaccaaacttcatctc 5598564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 54 - 377
Target Start/End: Complemental strand, 5637049 - 5636711
Alignment:
Q  54 aaaacctgtatacggtggaatggaatccagataaattagatgcttcgaaaagagcattcttccaatttcgcaacatcttatcatcat------------- 140  Q
    |||||||||||  ||| ||||| || ||||| ||||||| |||||  |||||| |||||||||||||| | | ||||||||||||||                 
T  5637049 aaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgtatcatcttatcatcattgttgccttgctc 5636950  T
Q  141 --tgtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatct 238  Q
      ||||||||||||  |||| |||||||  ||| || || ||||| || | |||||||||||||||||| || |||||||| ||||||||||| |||||     
T  5636949 cctgtgttttgccagtgcagcgccgtaataccctgtttgtttccgcacgtgtgaagggtcaacatggtaaaaaacaggaatgacaacaacgttgtcatcc 5636850  T
Q  239 tccttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggatt 338  Q
    || || ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||||||||||    
T  5636849 tcatttttgttaccacactccattatttgaacgagttcgttcaaacaccatgttgaagatgcatagttctctgagaacacaacaagaaacagagtggatt 5636750  T
Q  339 cattgattgctttcacaagttctaccgaaacttcatctc 377  Q
    | ||||||||||| |||||||||  | ||||||||||||    
T  5636749 ctttgattgctttaacaagttctgaccaaacttcatctc 5636711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 54 - 377
Target Start/End: Complemental strand, 5568993 - 5568658
Alignment:
Q  54 aaaacctgtatacggtggaatggaatccagataaattagatgcttcgaaaagagcattcttccaatttcgcaacatcttatcatc------------att 141  Q
    |||||||||||   | |||||| || ||||| |||||||  ||||  ||||||||||||||||||||| ||| ||||||||||||             ||    
T  5568993 aaaacctgtatgtcgaggaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcatcttggttctcttgctt 5568894  T
Q  142 gtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttcc 241  Q
    |||||| ||||| ||| |||| |||||||| ||||||||||| |||| |||||||||||||||||||||||||||||| ||| ||| ||| || |||||     
T  5568893 gtgtttcgccaatgcactgccataactcccggtctgcttccgcacatgtgaagggtcaacatggtagaacacaggaatcacaccaatgttgtcgtcttca 5568794  T
Q  242 ttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattcat 341  Q
    || |||||||  |||||||||| || ||  ||||| |||||||||||||||||||| || |||||||| |||||||| |||||||| ||||| ||||  |    
T  5568793 tttttgttacggcactccattagttcaacaagttcattcaaacaccatgttgaagaagcatagttctctgagaacacaacaagaaacagagttgattgtt 5568694  T
Q  342 tgattgctttcacaagttctaccgaaacttcatctc 377  Q
    ||||||||||| ||||||||  | ||||||||||||    
T  5568693 tgattgctttctcaagttctggccaaacttcatctc 5568658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 140 - 377
Target Start/End: Complemental strand, 5547742 - 5547499
Alignment:
Q  140 ttgtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatctt 239  Q
    |||||||| ||||| |||||||| ||||||||||| |||||||  || | |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5547742 ttgtgtttagccaaggcagtgccataactcccagtttgcttcctcacgtgtgaagggtcaacatggtagaacacaggaataacaacaacgttgtcatctt 5547643  T
Q  240 ccttgttgttact------acactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagt 333  Q
    | || |||||| |        |||||||||| | ||  |||||||||||||||||||||||||||||||||||||  ||||||||||||||||| | |||    
T  5547642 catttttgttaatgtcgaataactccattatctcaaccagttcgttcaaacaccatgttgaagatgcgtagttcttcgagaacacgacaagaaacaaagt 5547543  T
Q  334 ggattcattgattgctttcacaagttctaccgaaacttcatctc 377  Q
    |||||  || ||||| |||||||||||| || |||||| |||||    
T  5547542 ggattgtttcattgccttcacaagttctgcccaaacttgatctc 5547499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 140 - 377
Target Start/End: Complemental strand, 5562556 - 5562331
Alignment:
Q  140 ttgtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatctt 239  Q
    ||||||||||||| |||||||||||||||||| || || ||||||||||  ||||||||||||||||||||||||||| |||||||    | ||||| ||    
T  5562556 ttgtgttttgccagcgcagtgccgtaactccctgtgtgtttccgaacatcagaagggtcaacatggtagaacacaggattaacaact---tgatcatttt 5562460  T
Q  240 ccttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattc 339  Q
       ||| |      || ||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| | ||||||||     
T  5562459 ---tgtgg------cattccattatttgaacgagttcattcaaacaccatgttgaagacgcgtagttctccgagaacacgacaagaaacaaagtggattg 5562369  T
Q  340 attgattgctttcacaagttctaccgaaacttcatctc 377  Q
     || ||||| |||||||||||| || ||||||||||||    
T  5562368 tttcattgccttcacaagttctgcccaaacttcatctc 5562331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 57 - 361
Target Start/End: Complemental strand, 32632971 - 32632664
Alignment:
Q  57 acctgtatacggtggaatggaatccagataaattagatgcttcgaaaagagcattcttccaatttcgcaacatcttatcatca------------ttgtg 144  Q
    ||||||||  ||| ||||| || || |||||||| | |||||  ||||||||||||||||||||| ||| |||||||| ||||            |||||    
T  32632971 acctgtatgtggtagaatgaaaaccggataaattggctgcttgaaaaagagcattcttccaattttgcatcatcttatgatcacagccttgcttcttgtg 32632872  T
Q  145 ttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttccttg 244  Q
    |||||||||||||||||||||||| |||||||| ||||| ||    || ||||||| |||||| ||||||||||||||| ||||||| || |            
T  32632871 ttttgccaacgcagtgccgtaacttccagtctgtttccgcacgcgggaggggtcaatatggtaaaacacaggaataacagcaacgttgtctt-------- 32632780  T
Q  245 ttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattcattga 344  Q
     ||||||||||||||||||||| || ||||||||||||||||||||||||||| || |||||||  |||||||| || | ||| | ||||||||  ||||    
T  32632779 -tgttactacactccattatttcaacgagttcgttcaaacaccatgttgaagacgcatagttcttcgagaacactaccaaaaagatagtggattgtttga 32632681  T
Q  345 ttgctttcacaagttct 361  Q
    ||||||||  |||||||    
T  32632680 ttgctttcgtaagttct 32632664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 318
Target Start/End: Original strand, 12190360 - 12190532
Alignment:
Q  143 tgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttcct 242  Q
    ||||| |||||||| |||  ||||||||| |||||||| || |||| |||||| || | | |||||||||||||||||||||||||||| || || || |    
T  12190360 tgtttcgccaacgccgtgtggtaactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcat 12190459  T
Q  243 tgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacac 318  Q
    | || |   | |||| |||||||| || |||||| ||||||||||||||||||||||| ||||| || ||||||||    
T  12190460 tttttt---tgcacttcattatttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacac 12190532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 143 - 318
Target Start/End: Original strand, 12434788 - 12434960
Alignment:
Q  143 tgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttcct 242  Q
    ||||| |||||||| |||  ||||||||| |||||||| || |||| |||||| || | | |||||||||||||||||||||||||||| || || || |    
T  12434788 tgtttcgccaacgccgtgtggtaactccctgtctgctttcggacatgtgaaggttctatacggtagaacacaggaataacaacaacgttgtcttcgtcat 12434887  T
Q  243 tgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacac 318  Q
    | || |   | |||| |||||||| || |||||| ||||||||||||||||||||||| ||||| || ||||||||    
T  12434888 tttttt---tgcacttcattatttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacac 12434960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 377
Target Start/End: Complemental strand, 5573002 - 5572781
Alignment:
Q  140 ttgtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatctt 239  Q
    |||||||||||||| ||||||||||||||||| ||||||||||| || | |||||||||||||||||     || |||||||||||||| || || | ||    
T  5573002 ttgtgttttgccaaagcagtgccgtaactccccgtctgcttccggacgtgtgaagggtcaacatggt-----acgggaataacaacaacattgtcttttt 5572908  T
Q  240 ccttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattc 339  Q
    | || ||||    ||| | |||||||| ||  |||| ||||||||||||||||||        | ||||| ||||||||||||||||| | |||||| ||    
T  5572907 catttttgt---gacatttcattatttcaacaagtttgttcaaacaccatgttga--------acttctccgagaacacgacaagaaacaaagtggaatc 5572819  T
Q  340 attgattgctttcacaagttctaccgaaacttcatctc 377  Q
     |||||||||||||  ||||||  | ||||||||||||    
T  5572818 cttgattgctttcaagagttctgtccaaacttcatctc 5572781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 318
Target Start/End: Original strand, 12178685 - 12178837
Alignment:
Q  163 gtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttccttgttgttactacactccatt 262  Q
    |||||| || |||||||| || |||| |||||  || | | |||||||||||||||||||||||||||| || || || || || || |   ||| ||||    
T  12178685 gtaacttcctgtctgctttcggacatgtgaagcttctatacggtagaacacaggaataacaacaacgttgtcttcgtcattttttttgc---acttcatt 12178781  T
Q  263 atttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacac 318  Q
    |||| || |||||| ||||||||||||||||||||||| ||||| || ||||||||    
T  12178782 atttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacac 12178837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 163 - 318
Target Start/End: Original strand, 12423113 - 12423265
Alignment:
Q  163 gtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttccttgttgttactacactccatt 262  Q
    |||||| || |||||||| || |||| |||||  || | | |||||||||||||||||||||||||||| || || || || || || |   ||| ||||    
T  12423113 gtaacttcctgtctgctttcggacatgtgaagcttctatacggtagaacacaggaataacaacaacgttgtcttcgtcattttttttgc---acttcatt 12423209  T
Q  263 atttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacac 318  Q
    |||| || |||||| ||||||||||||||||||||||| ||||| || ||||||||    
T  12423210 atttcaacgagttcattcaaacaccatgttgaagatgcatagttttctgagaacac 12423265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 143
Target Start/End: Original strand, 5598226 - 5598315
Alignment:
Q  54 aaaacctgtatacggtggaatggaatccagataaattagatgcttcgaaaagagcattcttccaatttcgcaacatcttatcatcattgt 143  Q
    |||||||||||  ||| ||||| || ||||| ||||||| |||||  |||||| |||||||||||||| | | |||||||||||||||||    
T  5598226 aaaacctgtatgtggttgaatgaaaaccagacaaattagctgcttgaaaaagaacattcttccaattttgtatcatcttatcatcattgt 5598315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 77 - 117
Target Start/End: Complemental strand, 5562652 - 5562612
Alignment:
Q  77 aatccagataaattagatgcttcgaaaagagcattcttcca 117  Q
    |||||||||||||||| |||||| |||||||||||||||||    
T  5562652 aatccagataaattagctgcttcaaaaagagcattcttcca 5562612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 14403549 - 14403477
Alignment:
Q  71 gaatggaatccagataaattagatgcttcgaaaagagcattcttccaatttcgcaacatcttatcatcattgt 143  Q
    ||||| || ||||| |||||||  ||||  ||||||||||||||||||||| ||| |||||||||| ||||||    
T  14403549 gaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgt 14403477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 151; Significance: 8e-80; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 143 - 361
Target Start/End: Original strand, 15391 - 15609
Alignment:
Q  143 tgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttcct 242  Q
    |||||| |||||||||||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||| |||||||||||| |||||||| |    
T  15391 tgtttttccaacgcagtgccgtaactcccagtctgcttccgcacgtgtgaagggtcaacatggtagaacacaggaacaacaacaacgttgtcatcttcat 15490  T
Q  243 tgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattcatt 342  Q
    | |||||||||||||||||||||| ||  |||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||  ||    
T  15491 ttttgttactacactccattatttcaaccagttcgttcaaacaccatgttgaagacgcgtagttctccgagaacacaacaagaaaaagagtggattgttt 15590  T
Q  343 gattgctttcacaagttct 361  Q
    ||||||||| |||||||||    
T  15591 gattgctttaacaagttct 15609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 143
Target Start/End: Original strand, 15304 - 15376
Alignment:
Q  71 gaatggaatccagataaattagatgcttcgaaaagagcattcttccaatttcgcaacatcttatcatcattgt 143  Q
    ||||| || ||||| |||||||  ||||  ||||||||||||||||||||| ||| |||||||||| ||||||    
T  15304 gaatgaaaaccagacaaattagcagcttgaaaaagagcattcttccaattttgcatcatcttatcaccattgt 15376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 141 - 360
Target Start/End: Original strand, 19495895 - 19496108
Alignment:
Q  141 tgtgttttgccaacgcagtgccgtaactcccagtctgcttccgaacatttgaagggtcaacatggtagaacacaggaataacaacaacgttatcatcttc 240  Q
    ||||| |||||||||||| ||| ||||||||||||||||||||||||| |||||| |||| | ||||||||||||||| ||||||||| || ||    |     
T  19495895 tgtgtcttgccaacgcagcgccataactcccagtctgcttccgaacatatgaaggttcaatacggtagaacacaggaagaacaacaac-ttgtc----ta 19495989  T
Q  241 cttgttgttactacactccattatttgaaggagttcgttcaaacaccatgttgaagatgcgtagttctcggagaacacgacaagaaaaagagtggattca 340  Q
    ||| || || ||||||| |||||||| ||  ||||| | |||||||||  | |||   ||||||||||| |||||||| || ||||||||||| ||||||    
T  19495990 ctttttctt-ctacacttcattatttcaacaagttcatccaaacaccaactggaatccgcgtagttctctgagaacaccactagaaaaagagttgattca 19496088  T
Q  341 ttgattgctttcacaagttc 360  Q
    || |||||||||||||||||    
T  19496089 ttcattgctttcacaagttc 19496108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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