View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11574_high_16 (Length: 368)
Name: NF11574_high_16
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 11 - 353
Target Start/End: Original strand, 30058781 - 30059123
Alignment:
| Q |
11 |
agcaaaggttaatgaatatgcatagaggtctcctaatgcatattcaaatttctattgcgtgttaatgaattaacaagcacattattgagataaactaact |
110 |
Q |
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| T |
30058781 |
agcaaaggttaatgaatatgcatagaggtctcctaatgcatattcaaatttctattgcgtgttaatgaattaacaagcacattattgagataaactaact |
30058880 |
T |
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| Q |
111 |
gcatagaatgctttgtagatatgtccgaccacatagttgacattttcatctattctttgcaggagatctaattcacttatgagctaaccaatgttccagt |
210 |
Q |
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| T |
30058881 |
gcatagaatgctttgtagatatatccgaccacatagttgacattttcatctattctttgcaggagttctaattcacttatgagctaaccaatgttccagt |
30058980 |
T |
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| Q |
211 |
caccatactcttttggcttggcttaattaaatctggtaggaagaggtctcttaatgtgaaagactctcaaatagtcaaaccctgtcattcttgtgtagct |
310 |
Q |
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| T |
30058981 |
caccatactcttttggcttggcttaattaaatctggtaggaagaggtctcttaatgtgaaagactctcaaatagtcaaaccctgtcattattgtgtagct |
30059080 |
T |
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| Q |
311 |
gtagtaactgatatttcagactcattggaacactgtttcatga |
353 |
Q |
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| T |
30059081 |
gtagtaactgatatttcagactcattggaacactgtttcatga |
30059123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 30061174 - 30061307
Alignment:
| Q |
53 |
ttcaaatttctattgcgtgttaatgaattaacaagcacattattgagataaactaactgcatagaatgctttgtagatatgtcc-gaccacatagttgac |
151 |
Q |
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|||||||||||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |
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| T |
30061174 |
ttcaaatttctattgcgtgttaatgaattaacaaacacaatattgagataaaataactgcatagaatgctttgtagatatttccacaccacatagttgac |
30061273 |
T |
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| Q |
152 |
attttcatctattctttgcaggagatctaattca |
185 |
Q |
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| T |
30061274 |
attttcatctattcttggtaggatttctaattca |
30061307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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