View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11574_high_2 (Length: 806)

Name: NF11574_high_2
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11574_high_2
NF11574_high_2
[»] chr4 (11 HSPs)
chr4 (16-795)||(44859495-44860274)
chr4 (297-714)||(44870291-44870703)
chr4 (87-450)||(44895852-44896224)
chr4 (343-541)||(44846865-44847062)
chr4 (214-305)||(44870727-44870819)
chr4 (348-424)||(44835475-44835551)
chr4 (95-150)||(44847271-44847326)
chr4 (84-134)||(44870887-44870937)
chr4 (213-252)||(44847190-44847229)
chr4 (633-676)||(44895646-44895689)
chr4 (210-252)||(44835737-44835779)
[»] chr3 (1 HSPs)
chr3 (216-259)||(12928195-12928238)


Alignment Details
Target: chr4 (Bit Score: 739; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 16 - 795
Target Start/End: Complemental strand, 44860274 - 44859495
Alignment:
Q  16 agcacagactactaagttgcatgnnnnnnnaagctgaggatgagttttctgtttcctcattaatccctaatatgcaacaattaaaataggttttagatat 115  Q
    |||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44860274 agcacagactactaagttgcatgtttttttaagctgaggatgagttttctgtttcctcattaatccctaatatgcaacaattaaaataggttttagatat 44860175  T
Q  116 ataccagatttacagaacgaggaattcgcaacaatgtagttggaggagaatgtatgccacgactgaagactgacttgtaccatacaacaatgtcgaatcc 215  Q
    ||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44860174 ataccagatttacagaacgaggaatccgcaacaatgtagttgaaggagaatgtatgccacgactgaagactgacttgtaccatacaacaatgtcgaatcc 44860075  T
Q  216 atcctcatttgaatttagaaaatcaaaagctgtcaaaacaatatataaaaactgagtattaccttccacgcattatgcctattgaaacataatgataaaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44860074 atcctcatttgaatttagaaaatcaaaagctgtcaaaacaatatataaaaactgagtattaccttccacgcattatgcctattgaaacataatgataaaa 44859975  T
Q  316 gtacctgaagcgatctcattggtctgtcctttatataactcattgttgatatcagaagaactgtttcgccaaagatttataccttgaccacatctgattt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  44859974 gtacctgaagcgatctcattggtctgtcctttatataactcattgttgatatcagaagaactgttacgccaaagatttataccttgaccacatctgattt 44859875  T
Q  416 ctacatcaaatggaattaaattcaatcatcaacaattacaaaactccaaattttatatagcattctactctccattatttgtaaatatattgaaacaatc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44859874 ctacatcaaatggaattaaattcaatcatcaacaattacaaaactccaaattttatatagcattctactctccattatttgtaaatatattgaaacaatc 44859775  T
Q  516 ttttactgtatgagcctttattggccacaagttattatcattgcacaagtgtgtgcacttgaaaatttatgacaaagtttgaacattaattttttatatg 615  Q
    || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44859774 ttatactgtgtgagcctttattggccacaagttattatcattgcacaagtgtgtgcacttgaaaatttatgacaaagtttgaacattaattttttatatg 44859675  T
Q  616 ctccttttttatgatgtccaagctgttcaaaacacaaaggaagacttaggttcaagtcaacaaccacaagaataaaaaatatcaaatagcccccctcctt 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44859674 ctccttttttatgatgtccaagctgttcaaaacacaaaggaagacttaggttcaagtcaacaaccacaagaataaaaaatatcaaatagcccccctcctt 44859575  T
Q  716 acaaacagaaggcaaggatttgaaaagcctgtgatgagcctacagatatatgtactcactaacaaactattttatttttg 795  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44859574 acaaacagaaggcaaggatttgaaaagcctgtgatgagcctacagatatatgtactcactaacaaactattttatttttg 44859495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 297 - 714
Target Start/End: Complemental strand, 44870703 - 44870291
Alignment:
Q  297 ttgaaacataatgataaaagtacctgaagcgatctcattggtctgtcctttatataactcattgttgatatcagaagaactgtttcgccaaagatttata 396  Q
    |||||||||||||||||||||||||||| | | | |||||  ||| | |||||| ||||||||||||||||||||||||||||| ||||||||||| |||    
T  44870703 ttgaaacataatgataaaagtacctgaaaccaccccattgacctgccttttatacaactcattgttgatatcagaagaactgttacgccaaagattaata 44870604  T
Q  397 ccttgaccacatctgatttctacatcaaatggaattaaattc--aatcatcaacaattacaaaactccaaattttatatagcattctactctccattatt 494  Q
     | |||||||| |||||| ||| ||||||||||| |||||||  |||||| ||| |||||||||||||||||||||||||||||| |||||||||| |||    
T  44870603 acctgaccacaactgattcctatatcaaatggaaataaattcaaaatcattaacgattacaaaactccaaattttatatagcattttactctccatcatt 44870504  T
Q  495 tgtaaatatattgaaacaatcttttactgtatgagcctttattggccac----------aagttattatcattgcacaagtgtgtgcacttgaaaattta 584  Q
    ||||||||||| ||| ||||||||||  || ||||| ||||||||||||          |||||||||||| || ||| |||||||| |||             
T  44870503 tgtaaatatatagaagcaatctttta-ggtgtgagcttttattggccacaactgtccataagttattatcactgaacaggtgtgtgcgctt--------- 44870414  T
Q  585 tgacaaagtttgaacattaattttttatatgctccttttttatgatgtccaagctgttcaaaacacaaaggaagacttaggttcaagtcaacaaccacaa 684  Q
      ||||| ||||||||||||  |||||||||||| |||||| |||| |||||||||||||||||| ||  |||||||| |||||||||||||||||||||    
T  44870413 --acaaattttgaacattaa--ttttatatgctctttttttctgatttccaagctgttcaaaacagaactgaagactt-ggttcaagtcaacaaccacaa 44870319  T
Q  685 gaataaaaaatatcaaatagcccccctcct 714  Q
    ||||  ||||||||||||  ||||||||||    
T  44870318 gaat--aaaatatcaaatgtcccccctcct 44870291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 87 - 450
Target Start/End: Complemental strand, 44896224 - 44895852
Alignment:
Q  87 atgcaacaattaaaataggttttagatatataccagatttacagaacgaggaattcgcaacaatgtagttggaggagaatgtatgccacgactgaagact 186  Q
    ||||||| ||||||| | || |||||||||||||| ||||| ||||||||||||||||||||||| |||||||  | |||   || |||   ||  |  |    
T  44896224 atgcaaccattaaaacaagtgttagatatataccaaatttatagaacgaggaattcgcaacaatgcagttggaccaaaattagtgacacccttgttggtt 44896125  T
Q  187 gacttgtaccatacaacaatgtcgaatccatcctcatttgaatttagaaaatcaaaagctgtc-------aaaacaatatataaaaactgagtattacct 279  Q
    |||||||||||||||   | || |||||||| |||||| ||||||||||||||||||||||||       ||||||||||||||| | |||| |||| ||    
T  44896124 gacttgtaccatacagtgacgttgaatccattctcattcgaatttagaaaatcaaaagctgtcaaatgtgaaaacaatatataaata-tgaggattatct 44896026  T
Q  280 tccacgcattatgcctattgaaacataatgataaaagtacctgaagcgatctcattg--gtc-tgtcctttatataactcattgttgatatcagaagaac 376  Q
    ||||   ||||||  | | |||||||||||||||||||||||||| | ||   ||||   || || |||| ||||||||||||||||||  |||||||||    
T  44896025 tccaaatattatgtatgtagaaacataatgataaaagtacctgaaactattggattgtcttcatgaccttcatataactcattgttgatcacagaagaac 44895926  T
Q  377 tgtttcgccaaagatttataccttgaccacatctgatttctacatcaaatggaattaaattcaatcatcaacaa 450  Q
    |||  ||||| | ||||||||| | | |||||||||||||||||||||  |||| || |||||| ||| |||||    
T  44895925 tgtcacgccacaaatttataccgtcagcacatctgatttctacatcaaggggaaatatattcaaccattaacaa 44895852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 343 - 541
Target Start/End: Complemental strand, 44847062 - 44846865
Alignment:
Q  343 cctttatataactcattgttgatatcagaagaactgtttcgccaaagatttataccttgaccacatctgatttctacatcaaatggaattaaattcaatc 442  Q
    ||||||||||||||| ||| ||||||||| |||||||| ||||||| ||||||| ||||||||||||||| |||||| || | |||||  |||||||| |    
T  44847062 cctttatataactcagtgtcgatatcagaggaactgttacgccaaaaatttataacttgaccacatctgacttctacttctagtggaaacaaattcaacc 44846963  T
Q  443 atcaacaattacaaaactccaaattttatatagcattctactctccattatttgtaaatatattgaaacaatcttttactgtatgagcctttattggcc 541  Q
    || ||||||||  |||||||||||||||| || |||| ||||| |  | |||| ||||| | |||||||||||| |||| || |||||| |||||||||    
T  44846962 ataaacaatta-gaaactccaaattttatgtaacattttactccctgtcatttataaatgttttgaaacaatctattacagtgtgagccattattggcc 44846865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 214 - 305
Target Start/End: Complemental strand, 44870819 - 44870727
Alignment:
Q  214 ccatcctcatttgaatttagaaaatcaaaagctgtcaa--aacaatatataaaaactgagtattaccttccacgcattatgcctattgaaacat 305  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||||  |||||||| ||||| | |||||||| |||||||||||    
T  44870819 ccatcctcatttgaatttagaaaatcaaaagctgtcaaataacaatatataaaaa-ggagtattaacttccgcacattatgcatattgaaacat 44870727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 348 - 424
Target Start/End: Complemental strand, 44835551 - 44835475
Alignment:
Q  348 atataactcattgttgatatcagaagaactgtttcgccaaagatttataccttgaccacatctgatttctacatcaa 424  Q
    ||||||||| ||||||||||||||||||||||| |||||   || ||||||| || ||||| |||||||||||||||    
T  44835551 atataactctttgttgatatcagaagaactgttacgccatgaatatatacctcgagcacatttgatttctacatcaa 44835475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 44847326 - 44847271
Alignment:
Q  95 attaaaataggttttagatatataccagatttacagaacgaggaattcgcaacaat 150  Q
    ||||||| ||||||||||| ||||||||||| |||||||||||||| |||||||||    
T  44847326 attaaaacaggttttagatttataccagattgacagaacgaggaatccgcaacaat 44847271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 44870937 - 44870887
Alignment:
Q  84 aatatgcaacaattaaaataggttttagatatataccagatttacagaacg 134  Q
    |||||||||||||||||| ||||||||||| ||||||||||||||| ||||    
T  44870937 aatatgcaacaattaaaacaggttttagatttataccagatttacaaaacg 44870887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 213 - 252
Target Start/End: Complemental strand, 44847229 - 44847190
Alignment:
Q  213 tccatcctcatttgaatttagaaaatcaaaagctgtcaaa 252  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  44847229 tccatcctcattcgaatttagaaaatcaaaagctgtcaaa 44847190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 633 - 676
Target Start/End: Complemental strand, 44895689 - 44895646
Alignment:
Q  633 ccaagctgttcaaaacacaaaggaagacttaggttcaagtcaac 676  Q
    ||||||||||||||||||||| ||||| ||||||||||||||||    
T  44895689 ccaagctgttcaaaacacaaatgaagatttaggttcaagtcaac 44895646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 44835779 - 44835737
Alignment:
Q  210 gaatccatcctcatttgaatttagaaaatcaaaagctgtcaaa 252  Q
    ||||||||||||||||||||| |||||||| ||| ||||||||    
T  44835779 gaatccatcctcatttgaattgagaaaatcgaaaactgtcaaa 44835737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 12928195 - 12928238
Alignment:
Q  216 atcctcatttgaatttagaaaatcaaaagctgtcaaaacaatat 259  Q
    ||||||||||||||||||||||||| || ||| |||||||||||    
T  12928195 atcctcatttgaatttagaaaatcataacctggcaaaacaatat 12928238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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