View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11574_high_20 (Length: 313)
Name: NF11574_high_20
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 34719998 - 34720212
Alignment:
| Q |
1 |
tctgaaactcaagaacacatcatagatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgcgtactagctaaatacctggtatgctattaa |
100 |
Q |
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| T |
34719998 |
tctgaaactcaagaacacatcatagatcctttcctaaaataaaaaaataaagcaaattagcaaagcttgtgtactagctaaatacctggtatgctattaa |
34720097 |
T |
|
| Q |
101 |
catcaaccatctgttttgaaacttgtagttactttgatatttaatttttatccacaacctaacaaacttcggaaaaactaaaaaccatacgttaatgtta |
200 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
34720098 |
catcaaccatctgttttgaaacttgtacttactttgatatttaatttttattcacaacctaacaaacttcagaaaaactaaaaaccatacattaatgtta |
34720197 |
T |
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| Q |
201 |
aatcaagtagagtct |
215 |
Q |
| |
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||||||||||||||| |
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| T |
34720198 |
aatcaagtagagtct |
34720212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 34715235 - 34715333
Alignment:
| Q |
1 |
tctgaaactcaagaacacatcatagatcctttcctaaaatnnnnnnntaaagcaaattagcaaagcttgcgtactagctaaatacctggtatgctattaa |
100 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| || |||| |||||| ||||||||| ||| ||||||||||||| ||||||||| || |
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| T |
34715235 |
tctgaaactcaagaacacatcatagaacctttcctgaa---gaaaaagaaagtaaattatcaaagcttgtgtagtagctaaatacctagtatgctatcaa |
34715331 |
T |
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