View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11574_high_7 (Length: 515)
Name: NF11574_high_7
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 429; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 10 - 497
Target Start/End: Complemental strand, 24619017 - 24618525
Alignment:
| Q |
10 |
gcagagattaggatccattgactaaactgtctcaacaaggattgatcctgttcattgtcttttannnnnnnncgtttctttatattttgttactagttgt |
109 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
24619017 |
gcagagattaggatccattggctaaactgtctcaacaaggattgatcctgttcattgtcttttattatttttcgtttctttatattttgttactagttgt |
24618918 |
T |
|
| Q |
110 |
tgttctaaacgtgtcaatttttgcataccgatattgaagctcgggtaaatgatggaagcatatggtcgttccaacgcgcaaagttgtgcatttttgggtt |
209 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24618917 |
tgttctaaacgtgtcaatttttgcataccaatattgaagctcgggtaaatgatggaagcatatggtcgttccaacgcgcaaagttgtgcatttttgggtt |
24618818 |
T |
|
| Q |
210 |
caatacatatta-----gactttcattttaatatatggtattaaaattctatattaattgaccgtaatgtaagtgttacaccttgcttgtgtgctttgtc |
304 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
24618817 |
caatacatattatattagactttcattttaatatatggtattaaaattctatattaattgaccgtaatgtaagttttacaccttgcttgtgtgctttgtc |
24618718 |
T |
|
| Q |
305 |
aaatgaattcaaggattcatacttctgttgttggttgagataagcatagtaaagttttgacatcagaatcttcaaagatgaacaatcccacataataatt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24618717 |
aaatgaattcaaggattcatacttctgttgttggttgagataagcatagtaaagttttgacagcagaatcttcaaagatgaacaatcccacataataatt |
24618618 |
T |
|
| Q |
405 |
aaaggaacttaggagtgtaaatttagttaaatctcaaagaactttagacagggacataacaagttaaaatttgatgaaattttagaggcagtt |
497 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24618617 |
aaagtaacttaggagtgtaaatttagttaaatctcaaagaactttagacagggacataacaagttaaaatttgatgaaattttagaggcagtt |
24618525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University