View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11574_high_8 (Length: 449)
Name: NF11574_high_8
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 17 - 433
Target Start/End: Original strand, 37844169 - 37844583
Alignment:
| Q |
17 |
acaatatacatgcaccaataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatatatcaaagttctgtcgatgt |
116 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
37844169 |
acaatatacatgcaccgataccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacatgtatcgaagttctgtcgatgt |
37844268 |
T |
|
| Q |
117 |
tagacatcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatagcaagtgt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37844269 |
tagacatcaacacctatcgagcccttgaacacgatttcaaattgaagaatccatactagtctgctagataatgtatactaacattttaaatagcaagtgt |
37844368 |
T |
|
| Q |
217 |
ataccaaataatcatcggcttttgattgtactataccttggacctaattcatgtatcttacttttcatatagtcatgcatctttactttgctatcttgtc |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37844369 |
ataccaaataatcatcggcttttgattgtactataccttggacctaattcatgtatcttacttttcatatagtcatgcatcttcactttgctatcttgtc |
37844468 |
T |
|
| Q |
317 |
tcattagcatcaaaggctataacatattgtataagtttgatgtatcaaagaagaaaactattagtagtctaccatattgctaattatatgttgcatttgc |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37844469 |
tcattagcatcaaaggctataacatattgtataagtttgatgtatcaaagaagaaaactat--gtagtctaccatattgctaattatatgttgcatttgc |
37844566 |
T |
|
| Q |
417 |
tatccaaaagttttatg |
433 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
37844567 |
tatccaaaagttttatg |
37844583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 95
Target Start/End: Original strand, 16330969 - 16331029
Alignment:
| Q |
35 |
taccgacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
95 |
Q |
| |
|
|||||||||||| |||| || |||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
16330969 |
taccgacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacat |
16331029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 16567286 - 16567342
Alignment:
| Q |
39 |
gacatgtaaacacaagaaataatttaagaaagtgaaaatgattgtatgtaaccacat |
95 |
Q |
| |
|
|||||||| ||||| | |||||||||||||| || ||||||||| |||||||||||| |
|
|
| T |
16567286 |
gacatgtagacacatgcaataatttaagaaaatggaaatgattgaatgtaaccacat |
16567342 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University