View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11574_high_9 (Length: 449)

Name: NF11574_high_9
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11574_high_9
NF11574_high_9
[»] scaffold0095 (1 HSPs)
scaffold0095 (50-413)||(26822-27188)
[»] chr8 (1 HSPs)
chr8 (50-413)||(39402864-39403230)


Alignment Details
Target: scaffold0095 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 50 - 413
Target Start/End: Complemental strand, 27188 - 26822
Alignment:
Q  50 tgttgtttgttctcgtgtcaggtttgagagcagtgagatgctggcaacgtttttgatttctacaccactgttatcggagtcatggaggatgtgcagtcag 149  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||  |||||||||||||| |||| ||  ||    
T  27188 tgttgttttttcacgtgtcaggtttgagagcagtgagatgctggccaggttcttgatttctacgccactgttgccggagtcatggaggttgtgtagcaag 27089  T
Q  150 gccaacgcctccgctgtcaacctccgcagttttgtggtggagcgtgttggcaacgtcgtgtatgtagctttctccggcgttcaaatggccggcgggggat 249  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  27088 gtcaacgcctccgctgtcaacttccgcagttttgtggtggagcgtgttggcaacgtcgtgtatgtagctttctccggctttcaaatggccggcgggggat 26989  T
Q  250 ccgatccgagttggagaacgttggagccgttgaaaagcatcggtggagtgccactgttttcgaggcatcggaata---aagaggaggagccggtgaaggt 346  Q
    |||||||||||||||||||||||||||| ||| |||| || |||||||||||  ||||||||| || ||||||||   ||||||||||||||||||||||    
T  26988 ccgatccgagttggagaacgttggagcctttggaaagtattggtggagtgccgttgttttcgacgcgtcggaataaggaagaggaggagccggtgaaggt 26889  T
Q  347 tcattccgggatcttgaatctcttttcttcccttttcaactcaatccaaaaccaggtttgtttattt 413  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26888 tcactccgggatgttgaatctcttttcttcccttttcaactcaatccaaaaccaggtttgtttattt 26822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 50 - 413
Target Start/End: Complemental strand, 39403230 - 39402864
Alignment:
Q  50 tgttgtttgttctcgtgtcaggtttgagagcagtgagatgctggcaacgtttttgatttctacaccactgttatcggagtcatggaggatgtgcagtcag 149  Q
    |||||||| ||| |||||||||||||||||||||||||||||||| | ||| ||||||||||| ||||||||  |||||||||||||| |||| ||  ||    
T  39403230 tgttgttttttcacgtgtcaggtttgagagcagtgagatgctggccaggttcttgatttctacgccactgttgccggagtcatggaggttgtgtagcaag 39403131  T
Q  150 gccaacgcctccgctgtcaacctccgcagttttgtggtggagcgtgttggcaacgtcgtgtatgtagctttctccggcgttcaaatggccggcgggggat 249  Q
    | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  39403130 gtcaacgcctccgctgtcaacttccgcagttttgtggtggagcgtgttggcaacgtcgtgtatgtagctttctccggctttcaaatggccggcgggggat 39403031  T
Q  250 ccgatccgagttggagaacgttggagccgttgaaaagcatcggtggagtgccactgttttcgaggcatcggaata---aagaggaggagccggtgaaggt 346  Q
    |||||||||||||||||||||||||||| ||| |||| || |||||||||||  ||||||||| || ||||||||   ||||||||||||||||||||||    
T  39403030 ccgatccgagttggagaacgttggagcctttggaaagtattggtggagtgccgttgttttcgacgcgtcggaataaggaagaggaggagccggtgaaggt 39402931  T
Q  347 tcattccgggatcttgaatctcttttcttcccttttcaactcaatccaaaaccaggtttgtttattt 413  Q
    ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39402930 tcactccgggatgttgaatctcttttcttcccttttcaactcaatccaaaaccaggtttgtttattt 39402864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University