View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11574_low_1 (Length: 945)
Name: NF11574_low_1
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 570; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 326 - 926
Target Start/End: Complemental strand, 27982309 - 27981706
Alignment:
| Q |
326 |
tactcactcagaagtagacattgcaaaatggcgtcactctgcacataaaaactttgtagattagaattgccataaaaaatccttaatcctactacataat |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27982309 |
tactcactcagaagtagacattgcaaaatggcgtcactctgcacataaaaactttgtagattagaattgccataaaaaatccttaatcctactacataat |
27982210 |
T |
|
| Q |
426 |
actactaaaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatat |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27982209 |
actactaaaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatat |
27982110 |
T |
|
| Q |
526 |
tataatacacttatgaggagtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatat |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
27982109 |
tataatacacttatgaggagtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcagaattggaagcaggggttgagctatat |
27982010 |
T |
|
| Q |
626 |
gtatcactaaagggactcaattccctgcattctctacatcacacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagacc |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27982009 |
gtatcactaaagggactcaattccctgcattctctacatcacacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagacc |
27981910 |
T |
|
| Q |
726 |
aaccaaacctccttagaccttcacagtcactacctccatcatccttcactgacaaacaaaacaacc---accagtacctaacttgtacccatcctcttga |
822 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
27981909 |
aaccaaacctccttagaccttcacagtcaccacctccatcatccttcactgacaaacaaaacaaccaccaccagtacctaacttgtacccatcctcttga |
27981810 |
T |
|
| Q |
823 |
aaccaacacctcttgttcatcattcatgttgacaccacagaatactaaccctttagcacgcattagaaactccactaaccatatcaaacctattacgaac |
922 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27981809 |
aaccaacacctcttgttcatcattcatgttgacaccacaggatactaaccctttagcacacattagaaactccactaaccatatcaaacctattatgaac |
27981710 |
T |
|
| Q |
923 |
ctat |
926 |
Q |
| |
|
|||| |
|
|
| T |
27981709 |
ctat |
27981706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 326 - 926
Target Start/End: Complemental strand, 28068839 - 28068236
Alignment:
| Q |
326 |
tactcactcagaagtagacattgcaaaatggcgtcactctgcacataaaaactttgtagattagaattgccataaaaaatccttaatcctactacataat |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28068839 |
tactcactcagaagtagacattgcaaaatggcgtcactctgcacataaaaactttgtagattagaattgccataaaaaatccttaatcctactacataat |
28068740 |
T |
|
| Q |
426 |
actactaaaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatat |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28068739 |
actactaaaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatat |
28068640 |
T |
|
| Q |
526 |
tataatacacttatgaggagtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatat |
625 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
28068639 |
tataatacacttatgaggagtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcagaattggaagcaggggttgagctatat |
28068540 |
T |
|
| Q |
626 |
gtatcactaaagggactcaattccctgcattctctacatcacacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagacc |
725 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28068539 |
gtatcactaaagggactcaattccctgcattctctacatcacacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagacc |
28068440 |
T |
|
| Q |
726 |
aaccaaacctccttagaccttcacagtcactacctccatcatccttcactgacaaacaaaacaacc---accagtacctaacttgtacccatcctcttga |
822 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
28068439 |
aaccaaacctccttagaccttcacagtcaccacctccatcatccttcactgacaaacaaaacaaccaccaccagtacctaacttgtacccatcctcttga |
28068340 |
T |
|
| Q |
823 |
aaccaacacctcttgttcatcattcatgttgacaccacagaatactaaccctttagcacgcattagaaactccactaaccatatcaaacctattacgaac |
922 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
28068339 |
aaccaacacctcttgttcatcattcatgttgacaccacaggatactaaccctttagcacacattagaaactccactaaccatatcaaacctattatgaac |
28068240 |
T |
|
| Q |
923 |
ctat |
926 |
Q |
| |
|
|||| |
|
|
| T |
28068239 |
ctat |
28068236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 27982601 - 27982369
Alignment:
| Q |
21 |
cacaaattaagaaataacaggttaaaataa---taaaaaatgctgattctaacaagaatccatttacaatttctcaatcgtcgtggttatgaacatttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27982601 |
cacaaattaagaaataacaggttaaaataaaaataaaaaatgctgattctaacaagaatccatttacaatttctcaatcgccgtggttatgaacatttta |
27982502 |
T |
|
| Q |
118 |
aaaagtgaaaatacagatcagattctgcaaatttggagtggaaatgaaaaaataatgagaaaccttttaaactgcggtttgagccctgattttctgtttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27982501 |
aaaagtgaaaatacagatcagattctacaaatttggagtggaaatgaaaaaataatgagaaaccttttaaactgcggtttgagccctgattttctgtttg |
27982402 |
T |
|
| Q |
218 |
attgtcctgttgttgtggattttctgaggaatc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
27982401 |
attgtcctgttgttgtggattttctgaggaatc |
27982369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 21 - 250
Target Start/End: Complemental strand, 28069131 - 28068899
Alignment:
| Q |
21 |
cacaaattaagaaataacaggttaaaataa---taaaaaatgctgattctaacaagaatccatttacaatttctcaatcgtcgtggttatgaacatttta |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28069131 |
cacaaattaagaaataacaggttaaaataaaaataaaaaatgctgattctaacaagaatccatttacaatttctcaatcgccgtggttatgaacatttta |
28069032 |
T |
|
| Q |
118 |
aaaagtgaaaatacagatcagattctgcaaatttggagtggaaatgaaaaaataatgagaaaccttttaaactgcggtttgagccctgattttctgtttg |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28069031 |
aaaagtgaaaatacagatcagattctacaaatttggagtggaaatgaaaaaataatgagaaaccttttaaactgcggtttgagccctgattttctgtttg |
28068932 |
T |
|
| Q |
218 |
attgtcctgttgttgtggattttctgaggaatc |
250 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
28068931 |
attgtcctgttgttgtggattttctgaggaatc |
28068899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 433 - 643
Target Start/End: Complemental strand, 27983574 - 27983359
Alignment:
| Q |
433 |
aaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataata |
532 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||| || || || |||||||| ||||||||| ||||||| |||||||||| ||||||||| || |
|
|
| T |
27983574 |
aaaaattagcacatggacaagcaaatttcaattacaagggcgaagttccattcaagaagcaaatagtgaatgttatgcatatgcattacatattatagta |
27983475 |
T |
|
| Q |
533 |
cacttatgaggagtatagtgtgatctatacttcaaa-----ctaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatatgt |
627 |
Q |
| |
|
||||| |||| ||| |||||| ||| |||||||||| |||||||||| | |||||||| |||||| | |||| |||| |||||||||||| ||| |
|
|
| T |
27983474 |
cacttgtgagaagtgtagtgtaatccatacttcaaaactaactaccccaatatttgagttttctgcacttgaaattagaagttggggttgagctacatgc |
27983375 |
T |
|
| Q |
628 |
atcactaaagggactc |
643 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
27983374 |
atcactaaagggactc |
27983359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 433 - 643
Target Start/End: Complemental strand, 28070104 - 28069889
Alignment:
| Q |
433 |
aaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataata |
532 |
Q |
| |
|
||||||||||||| |||||||| |||||| ||||| || || || |||||||| ||||||||| ||||||| |||||||||| ||||||||| || |
|
|
| T |
28070104 |
aaaaattagcacatggacaagcaaatttcaattacaagggcgaagttccattcaagaagcaaatagtgaatgttatgcatatgcattacatattatagta |
28070005 |
T |
|
| Q |
533 |
cacttatgaggagtatagtgtgatctatacttcaaa-----ctaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatatgt |
627 |
Q |
| |
|
||||| |||| ||| |||||| ||| |||||||||| |||||||||| | |||||||| |||||| | |||| |||| |||||||||||| ||| |
|
|
| T |
28070004 |
cacttgtgagaagtgtagtgtaatccatacttcaaaactaactaccccaatatttgagttttctgcacttgaaattagaagttggggttgagctacatgc |
28069905 |
T |
|
| Q |
628 |
atcactaaagggactc |
643 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
28069904 |
atcactaaagggactc |
28069889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 138; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 628 - 912
Target Start/End: Original strand, 26418223 - 26418514
Alignment:
| Q |
628 |
atcactaaagggactcaattccctgcattctctacatca---cacactcaacattagaatagcaacaaaaaatgcaacaccataaaccaccacaggagac |
724 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| ||||||||||| |||| ||| ||||||| ||||||| |||||||||| | ||||||| |
|
|
| T |
26418223 |
atcactaaagggactcggttccctgcattctctacatcatgacacactcaacactagattagtaacaaaa--tgcaacatcataaaccacgataggagac |
26418320 |
T |
|
| Q |
725 |
caaccaaacctccttagaccttcacagtcactacctccatc------atccttcactgacaaacaaaacaaccaccagtacctaacttgtacccatcctc |
818 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
26418321 |
caaccaaccctccttagaccttcacagtcactacctccacctccatgatccttcgctgacaaaccaaacaaccactggtacctaacttgtacccatcctc |
26418420 |
T |
|
| Q |
819 |
ttgaaaccaacacctcttgttcatcattcatgttgacaccacagaatactaaccctttagcacgcattagaaactccactaaccatatcaaacc |
912 |
Q |
| |
|
| |||||||||||||||| |||| ||||| ||||||||||||| ||| ||||||||||| |||||| ||| |||| ||||||||||||||| |
|
|
| T |
26418421 |
tcgaaaccaacacctcttcttcaccattcccgttgacaccacaggccactgaccctttagcatgcattacaaattccagtaaccatatcaaacc |
26418514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 433 - 643
Target Start/End: Original strand, 26417394 - 26417604
Alignment:
| Q |
433 |
aaaaattagcacacaaacaagcaactttcaaatacaaaggtcaaactcatttcaagaaacaaatagtggatgttatacatatgcatttcatattataata |
532 |
Q |
| |
|
|||||||||||||| ||| | || |||||| ||||| | ||| ||| |||||||| ||||||||| |||||||||||||||||| ||||||||| || |
|
|
| T |
26417394 |
aaaaattagcacacggacaggtaaatttcaattacaagagccaagttcaattcaagaagcaaatagtgaatgttatacatatgcattacatattatagta |
26417493 |
T |
|
| Q |
533 |
cacttatgaggagtatagtgtgatctatacttcaaactaccccaatgtatgagttttgtgcactcggaattggaagcaggggttgagctatatgtatcac |
632 |
Q |
| |
|
||||| |||| ||| ||| || ||||||||| |||||||||| || | |||||||| ||||| | |||| ||||||||||||||| || ||| ||||| |
|
|
| T |
26417494 |
cacttgtgagaagtgtagcgtaatctatactccaaactacccaaagatctgagttttccgcacttgaaattagaagcaggggttgaggtacatgcatcac |
26417593 |
T |
|
| Q |
633 |
taaagggactc |
643 |
Q |
| |
|
||||||||||| |
|
|
| T |
26417594 |
taaagggactc |
26417604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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