View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11574_low_12 (Length: 428)
Name: NF11574_low_12
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 9 - 414
Target Start/End: Original strand, 12311777 - 12312185
Alignment:
| Q |
9 |
gagaagaataagatcttacagtttgatgaacacgctgctaagtaggaagatctaataacaaaactagatgattcgcttcaaaagatgaaggggtctggga |
108 |
Q |
| |
|
||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
12311777 |
gagaagaataatatcttacagtttgatgagcatgctgctaagtaggaagatctaataacaaaactacatgaatcgcttcaaaagatgaaggggtctggga |
12311876 |
T |
|
| Q |
109 |
gactttgtactggagccaacaatgaagttccgaggggatggtttatcgaacttctaagtcaaatggatctagcagaacctagaaggaatcctcaaagaaa |
208 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12311877 |
gactttgtactggagccaacaatgaagctccgaggggatggtttattgaacttctaagtcaaatggatctagcaaaacctagaaggaatcctcaaagaaa |
12311976 |
T |
|
| Q |
209 |
acttccaaactcaaggactaattctaacgatattccatatgtgtatgaatctcctctggtaaatcc---agcccttattgtgcctctaagaccacaagat |
305 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||||||| |
|
|
| T |
12311977 |
acttccaaacttaaggactaattctaatgatattccatatgtgtatgaatcccctctggtaaatccagaagcccttattgtgcctctgagactacaagat |
12312076 |
T |
|
| Q |
306 |
ttcatcatttttgctgttgtattataacctcatctttcagcttctgtatatgctattgagtttgaaaggttcaaggaagagatcaaaactgaactcgctg |
405 |
Q |
| |
|
||||||||||||| |||||| ||| |||||||||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12312077 |
ttcatcatttttgttgttgtgttacaacctcatcttttagcttatgtatatgccattgagtttgaaaggttcaaggaagagatcaaaactgaactcgctg |
12312176 |
T |
|
| Q |
406 |
ctcaaagtg |
414 |
Q |
| |
|
||||||||| |
|
|
| T |
12312177 |
ctcaaagtg |
12312185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University