View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11574_low_13 (Length: 421)
Name: NF11574_low_13
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 12 - 406
Target Start/End: Complemental strand, 42693977 - 42693584
Alignment:
| Q |
12 |
agcacagagactgacctaatagtaagtttaagaattatactaaccatcatagccctcatccttggttgttccctttgaacgcgatcaaaaatatgctttt |
111 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42693977 |
agcacaaagactaacctaatagtaagtttaagaattatactaaccatcatagtcctcatccttggttgttccctttgaacgcgatcaaaaatatgctttt |
42693878 |
T |
|
| Q |
112 |
tggtctatttcttccacccctcaaaatccaaaaaggagaaaggtgatgacggctaggtttaaaaatgagagttgattataaataattgagctaaagtaaa |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
|
|
| T |
42693877 |
tggtctatttcttccacccctcaaaatccaaaaaggagaaaggtgatgacggctaggtttaaaaaggagagttgattataaatagttgagctaaagtaaa |
42693778 |
T |
|
| Q |
212 |
cctcaaaattaagttgaagaataaaacaaggtaattaaaccaacatttttcttattatgaaattcttttttatcaactatacnnnnnnntttgtgtctca |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42693777 |
cctcaaaattaagttgaagaataaaacaaggtaattaaaccaacatttttcttattatgaaattcttttttatcaactata-taaaaaaattgtgtctca |
42693679 |
T |
|
| Q |
312 |
tatttgtggtttgatcacacgattgtatattgttgattatcctttctttgattannnnnnnngtgatggtaacttttttcaagacaggatgttac |
406 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42693678 |
tgtttgtggtttgatcacacgattgtatattgttgattatcctttctttgattattttttttgtgatggtaacttttttcaagacaggatgttac |
42693584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University