View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11574_low_14 (Length: 412)
Name: NF11574_low_14
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 32 - 396
Target Start/End: Original strand, 7655866 - 7656230
Alignment:
| Q |
32 |
tatcttccctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaagatgcgcttaatacattcataatagg |
131 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
7655866 |
tatcttctctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaagatgcgcttaatacgttcataatagg |
7655965 |
T |
|
| Q |
132 |
agttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggaggaa |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
7655966 |
agttagaccaagacttgttccaccattgccggaagattattttggaaacgcgattataggttgcgggtttaaaatgaaagttggggagttgttggaggaa |
7656065 |
T |
|
| Q |
232 |
ggtgggattggtaaaggtgctttgttgatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaa |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7656066 |
ggtgggattggtaaaggtgctttgttgatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaa |
7656165 |
T |
|
| Q |
332 |
actttattaggcttgatagcttgagcactaagaattttttggccattagcagttctccaaagttt |
396 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7656166 |
actttattaggcttgatagcttgagcactaagaattttttggccattagcagttctccaaagttt |
7656230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 346
Target Start/End: Complemental strand, 7637457 - 7637143
Alignment:
| Q |
32 |
tatcttccctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaagatgcgcttaatacattcataatagg |
131 |
Q |
| |
|
||||||| |||||||| ||||||||||| ||||||| | |||| |||| |||||| |||| ||||||||||| | |||||| | || | ||||| |
|
|
| T |
7637457 |
tatcttctctacaagcacttttaactcacgtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgtgatagg |
7637358 |
T |
|
| Q |
132 |
agttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggaggaa |
231 |
Q |
| |
|
|||| ||||||| | |||||||| || |||||||||||||||||||| || ||||| |||| | |||||||||||| |||||| |||||||||||| |
|
|
| T |
7637357 |
agttcgaccaaggttagttccaccgttaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctggggaattgttggaggaa |
7637258 |
T |
|
| Q |
232 |
ggtgggattggtaaaggtgctttgttgatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaa |
331 |
Q |
| |
|
||||| || |||||||||||||| |||||| ||||||||||||| ||| | |||| || || |||||| |||| ||||| ||||| |||||||||| |
|
|
| T |
7637257 |
ggtggactttgtaaaggtgctttggagatgaacaagttaattgcttcacacactgatgagaagttgaagaatcattacgagtcttggttaagaaatccaa |
7637158 |
T |
|
| Q |
332 |
actttattaggcttg |
346 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
7637157 |
gcttttttaggcttg |
7637143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 32 - 277
Target Start/End: Complemental strand, 7629011 - 7628766
Alignment:
| Q |
32 |
tatcttccctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaagatgcgcttaatacattcataatagg |
131 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||||||| | |||| |||| |||||| |||| ||||||||||| | |||||| | || ||||| |
|
|
| T |
7629011 |
tatcttctctacaagcgcttctaactcatgtttggtgctatgtgacccgtttcaaacaatttgacccacaagaagaagtatttaatagagtcgcgatagg |
7628912 |
T |
|
| Q |
132 |
agttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggaggaa |
231 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||||||||||||||||| || ||||| |||| | |||||||||||| || ||| |||||||||||| |
|
|
| T |
7628911 |
agttagaccaaggcttattccaccattaccagaagattattttggaaatgcacttataagttgtatggttaaaatgaaagctgaggaattgttggaggaa |
7628812 |
T |
|
| Q |
232 |
ggtgggattggtaaaggtgctttgttgatgaataagttaattgctt |
277 |
Q |
| |
|
||||| || |||||||||||| |||||| ||||||||||||| |
|
|
| T |
7628811 |
ggtggactttgtaaaggtgcttgtgagatgaacaagttaattgctt |
7628766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 35 - 351
Target Start/End: Complemental strand, 7606623 - 7606307
Alignment:
| Q |
35 |
cttccctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaagatgcgcttaatacattcataataggagt |
134 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||| || || | ||||||||||| |||| | ||||||||| | |||| | || | |||||||| |
|
|
| T |
7606623 |
cttctctacaagcgcttttaactcacctttggtgctctgtcgtccgttccaaacaatttgacctacaagaagaagtatataatctagtcgtgataggagt |
7606524 |
T |
|
| Q |
135 |
tagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggaggaaggt |
234 |
Q |
| |
|
| ||||||| ||||||||||||| ||||||||||||||||||||| |||||||| |||| | |||||||||| ||| ||||||||||| |||||| |
|
|
| T |
7606523 |
tggaccaaggtttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggt |
7606424 |
T |
|
| Q |
235 |
gggattggtaaaggtgctttgttgatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaaact |
334 |
Q |
| |
|
|| | ||||||||||| |||||| || |||||||||| ||| || |||| || || |||||| | |||||||| ||||| |||||||||| || |
|
|
| T |
7606423 |
ggactatataaaggtgcttgtgagatgaacaaattaattgcttcacacacggatgagaagttgaagaatcactatgagtcttggttaagaaatccaagct |
7606324 |
T |
|
| Q |
335 |
ttattaggcttgatagc |
351 |
Q |
| |
|
|| ||||| ||| |||| |
|
|
| T |
7606323 |
ttgttagggttgctagc |
7606307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 32 - 336
Target Start/End: Complemental strand, 7615640 - 7615336
Alignment:
| Q |
32 |
tatcttccctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaagatgcgcttaatacattcataatagg |
131 |
Q |
| |
|
||||||| ||||||| |||||||||||| |||||||| || ||||| ||||||| | | |||| ||||||||||| | |||||| | | | ||||| |
|
|
| T |
7615640 |
tatcttctctacaagtgcttttaactcacctttggtgctctgtgatgcgttccataaaatttgacccacaagaagaagtatttaatatagttgtgatagg |
7615541 |
T |
|
| Q |
132 |
agttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggaggaa |
231 |
Q |
| |
|
|||| ||||||| | ||||||||||| |||||| ||||||||||||| || ||||| |||| | |||||||||||| |||||||||| |||| ||| |
|
|
| T |
7615540 |
agttcgaccaaggttagttccaccattaccagaatattattttggaaatgcacttataagttgtatggttaaaatgaaagttggggagttggtggaagaa |
7615441 |
T |
|
| Q |
232 |
ggtgggattggtaaaggtgctttgttgatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaa |
331 |
Q |
| |
|
||||| || |||||||||||| |||||| |||||||||| || ||| | |||| || || |||||| | || ||||| ||||| |||||||||| |
|
|
| T |
7615440 |
ggtggactttgtaaaggtgcttgtgagatgaacaagttaattgtttcacacactgatgagaagttgaagaatcactacgagtcttggttaagaaatccaa |
7615341 |
T |
|
| Q |
332 |
acttt |
336 |
Q |
| |
|
|||| |
|
|
| T |
7615340 |
gcttt |
7615336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 32 - 337
Target Start/End: Original strand, 8935830 - 8936135
Alignment:
| Q |
32 |
tatcttccctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaagatgcgcttaatacattcataatagg |
131 |
Q |
| |
|
||||||| |||||||||| ||||||||| |||||||| | ||||| |||||||| | |||| ||||||||||| | | |||||| | || | ||||| |
|
|
| T |
8935830 |
tatcttctctacaagcgcctttaactcacctttggtgctgtgtgatgtgttccaaaaaaattgacccacaagaagaagtggttaatagaatcgtgatagg |
8935929 |
T |
|
| Q |
132 |
agttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggaggaa |
231 |
Q |
| |
|
|||| ||||||| | ||||||||||| |||||| ||||||||||||| || ||||| |||| | ||||||||| || ||||||||||||| ||||| |
|
|
| T |
8935930 |
agttggaccaaggttagttccaccattaccagaatattattttggaaatgcagttataagttgtatggttaaaatgacagctggggagttgttgaaggaa |
8936029 |
T |
|
| Q |
232 |
ggtgggattggtaaaggtgctttgttgatgaataagttaattgctttgcactcgaatgaaaaattaaagaatgattatgagtcatggttgagaaatccaa |
331 |
Q |
| |
|
||||| || |||||||||||| |||||| |||||||||||||| ||| | |||| || || |||||| | |||||||| ||||| |||||||||| |
|
|
| T |
8936030 |
ggtggactttgtaaaggtgcttgtgagatgaacaagttaattgctttacacactgatgagaagttgaagaatcactatgagtcttggttaagaaatccaa |
8936129 |
T |
|
| Q |
332 |
acttta |
337 |
Q |
| |
|
||||| |
|
|
| T |
8936130 |
gcttta |
8936135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 8910891 - 8911095
Alignment:
| Q |
32 |
tatcttccctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccacaagaagatgcgcttaatacattcataatagg |
131 |
Q |
| |
|
||||||| |||||||| ||||||||||| | |||| | ||||| ||| |||||| ||||||||||||| || | |||||| | |||| ||||| |
|
|
| T |
8910891 |
tatcttctctacaagcacttttaactcacatctggtcctatgtgatatgtttcaaacaatttgatccacaagatgaagtatttaatagagtcatgatagg |
8910990 |
T |
|
| Q |
132 |
agttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggaggaa |
231 |
Q |
| |
|
|||| ||||||| | ||||||||||| |||||| ||||||||||||| || ||| || |||| | |||||||||||| ||||||| ||||||||||| |
|
|
| T |
8910991 |
agttggaccaaggttagttccaccattaccagaatattattttggaaatgcaattgtaagttgtatggttaaaatgaaagttggggagctgttggaggaa |
8911090 |
T |
|
| Q |
232 |
ggtgg |
236 |
Q |
| |
|
||||| |
|
|
| T |
8911091 |
ggtgg |
8911095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 146 - 277
Target Start/End: Original strand, 8938720 - 8938851
Alignment:
| Q |
146 |
ttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggaggaaggtgggattggtaa |
245 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| |||||||| |||| | |||||||||| ||| ||||||||||| |||||||| | ||| |
|
|
| T |
8938720 |
ttgttccaccattaccagaagattattttggaaactcgattataagttgtatagtcaaaatgaaagttggtgagttgttggacgaaggtggactatataa |
8938819 |
T |
|
| Q |
246 |
aggtgctttgttgatgaataagttaattgctt |
277 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |
|
|
| T |
8938820 |
aggtgcttgtgagatgaacaagttaattgctt |
8938851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 253
Target Start/End: Complemental strand, 6500877 - 6500655
Alignment:
| Q |
32 |
tatcttccctacaagcgcttttaactcatctttggtgttcagtgattcgttccaaacatcttgatccac-aagaagatgcgcttaatacattcataatag |
130 |
Q |
| |
|
|||| ||| ||||||| ||||||||||| ||||| |||| ||||| | ||||||| | ||||| |||| ||||||| | |||| ||| |||||| |
|
|
| T |
6500877 |
tatcatccttacaagctcttttaactcacatttggcgttctgtgatccattccaaaaaacttgacccaccaagaagaagtttacaatatgttcctaatag |
6500778 |
T |
|
| Q |
131 |
gagttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttggagga |
230 |
Q |
| |
|
| ||||||||||| |||||||||| ||| ||| |||||||||||||||| || | |||| ||| || ||| ||||||| ||| ||||||||||| || |
|
|
| T |
6500777 |
gcgttagaccaaggcttgttccactattaccacaagattattttggaaatgctgtgatagattgtagggttagcatgaaagctggtgagttgttggaaga |
6500678 |
T |
|
| Q |
231 |
aggtgggattggtaaaggtgctt |
253 |
Q |
| |
|
||| ||||||||||||||||||| |
|
|
| T |
6500677 |
aggcgggattggtaaaggtgctt |
6500655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 253
Target Start/End: Complemental strand, 8102756 - 8102630
Alignment:
| Q |
127 |
ataggagttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttgg |
226 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||| ||||||||||||||||| || || ||| || | || |||||||| |||||||||||||| |
|
|
| T |
8102756 |
ataggagttagacaaaggtttgttccaccattgccggaagattattttggaaatgctgttgtagcttctatggttgcaatgaaagttggggagttgttgg |
8102657 |
T |
|
| Q |
227 |
aggaaggtgggattggtaaaggtgctt |
253 |
Q |
| |
|
| ||||| ||| |||||||| |||||| |
|
|
| T |
8102656 |
aagaaggcgggtttggtaaatgtgctt |
8102630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 253
Target Start/End: Original strand, 40147189 - 40147315
Alignment:
| Q |
127 |
ataggagttagaccaagacttgttccaccattgccagaagattattttggaaacgcgattataggttgcgggtttaaaatgaaaggtggggagttgttgg |
226 |
Q |
| |
|
||||||| |||| |||| |||||||||||||||| ||||||||||||||||| || || || ||| || ||| |||||||| || |||||||||| |
|
|
| T |
40147189 |
ataggagctagatcaaggtttgttccaccattgcctgaagattattttggaaatgctgttgaagtttgtagggttacaatgaaagcgggagagttgttgg |
40147288 |
T |
|
| Q |
227 |
aggaaggtgggattggtaaaggtgctt |
253 |
Q |
| |
|
| || |||||| ||||||||||||||| |
|
|
| T |
40147289 |
aagatggtgggcttggtaaaggtgctt |
40147315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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