View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11574_low_15 (Length: 409)
Name: NF11574_low_15
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 385
Target Start/End: Original strand, 49082433 - 49082812
Alignment:
| Q |
20 |
cacttgacatagatctcgtattaacagaagtcgatctaccatcaatctctggtttttcattacttacccaaatcatggaccatcactattgcaaaaacat |
119 |
Q |
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| T |
49082433 |
cacttgacatagatctcgtattaacagaagtcgatctcccatcaatctctggtttttcattacttacccaaatcatggaccatcacaattgcaaaaacat |
49082532 |
T |
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| Q |
120 |
tcctctcataagtatg--------------------ttatgtctgaactaattaaataacttccttcttcatgtttcctcattacatcatgtatgtaaat |
199 |
Q |
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| T |
49082533 |
tcctctcataagtatgttatgttatgttatgttatgttatgtctgaactaattaaataacttccttcttcatgtttcctcattacatcatgtatgtaaat |
49082632 |
T |
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| Q |
200 |
gtaatttgcagtgatgtcttctcaagattcagttagcactgtattcaaattcatgctcaacggggctgtcgattttctcattaaaccagttcgcaggaat |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49082633 |
gtaatttgcagtgatgtcttctcaagattcagttagcactgtattcaaattcatgctcaacggggctgtcgattttctcattaaaccagttcgcaggaat |
49082732 |
T |
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| Q |
300 |
gagcttaggaacctgtggcagcatgtgtggagaagaaatactactgtatgtcaatgtcaatatacttacttatattccaatccaac |
385 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| |
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| T |
49082733 |
gagcttaggaacttgtggcagcatgtgtggagaagaaatactactgt------atgtcaatatacttatttatattccaatccaac |
49082812 |
T |
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