View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11574_low_17 (Length: 378)

Name: NF11574_low_17
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11574_low_17
NF11574_low_17
[»] chr8 (3 HSPs)
chr8 (239-355)||(20135209-20135325)
chr8 (1-100)||(20131526-20131625)
chr8 (179-243)||(20131689-20131753)
[»] chr7 (3 HSPs)
chr7 (239-355)||(44356746-44356862)
chr7 (1-100)||(44360443-44360542)
chr7 (179-243)||(44360315-44360379)


Alignment Details
Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 239 - 355
Target Start/End: Original strand, 20135209 - 20135325
Alignment:
Q  239 cctacattgtaatggcggagaggatatatggcaagtatttaatgacgcggtgcattttttcgggatgttgtttgataatattcacaaatggtcggaacaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20135209 cctacattgtaatggcggagaggatatatggcaagtatttaatgacgcggtgcattttttcgggatgttgtttgataatattcacaaatggtcggaacaa 20135308  T
Q  339 gatactagatatgaacg 355  Q
    |||||||||||||||||    
T  20135309 gatactagatatgaacg 20135325  T

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Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 20131526 - 20131625
Alignment:
Q  1 tttttgggactattattctgtttgataaaaacatcttcataaacaatcattttttaaaataaaatgaccacctttcaaagtttttcatttagagattttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  20131526 tttttgggactattattctgtttgataaaaacatcttcataaaaaatcattttttaaaataaaatgaccacctttcgaagtttttcatttagagattttc 20131625  T

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Target: chr8; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 243
Target Start/End: Original strand, 20131689 - 20131753
Alignment:
Q  179 aatcgatgatgctggtttttctcaggttgtggttactgcaatgggaggggatagagttttcctac 243  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  20131689 aatcgatgctgctggtttttctcaggttgtggttactctaatgggaggggatagagttttcctac 20131753  T

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Target: chr7 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 239 - 355
Target Start/End: Complemental strand, 44356862 - 44356746
Alignment:
Q  239 cctacattgtaatggcggagaggatatatggcaagtatttaatgacgcggtgcattttttcgggatgttgtttgataatattcacaaatggtcggaacaa 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44356862 cctacattgtaatggcggagaggatatatggcaagtatttaatgacgcggtgcattttttcgggatgttgtttgataatattcacaaatggtcggaacaa 44356763  T
Q  339 gatactagatatgaacg 355  Q
    |||||||||||||||||    
T  44356762 gatactagatatgaacg 44356746  T

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Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 44360542 - 44360443
Alignment:
Q  1 tttttgggactattattctgtttgataaaaacatcttcataaacaatcattttttaaaataaaatgaccacctttcaaagtttttcatttagagattttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  44360542 tttttgggactattattctgtttgataaaaacatcttcataaaaaatcattttttaaaataaaatgaccacctttcgaagtttttcatttagagattttc 44360443  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 179 - 243
Target Start/End: Complemental strand, 44360379 - 44360315
Alignment:
Q  179 aatcgatgatgctggtttttctcaggttgtggttactgcaatgggaggggatagagttttcctac 243  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  44360379 aatcgatgctgctggtttttctcaggttgtggttactctaatgggaggggatagagttttcctac 44360315  T

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