View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11574_low_19 (Length: 364)
Name: NF11574_low_19
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_19 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 316
Target Start/End: Complemental strand, 8094061 - 8093744
Alignment:
| Q |
1 |
ataggattaattaagttaaagcttgcaaacatggggggtttaatgtatttgttggtattgtgtttgggtattattatgcaaattaatcactgccttagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8094061 |
ataggattaattaagttaaagcttgcaaacatggggggtttaatgtatctgttggtattgtgtttgggtattattatgcaaattaatcactgccttagca |
8093962 |
T |
|
| Q |
101 |
atagcatgatcatgaagtgcttgcctaagaaacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8093961 |
atagcatgatcatgaagtgcttgcctaagaaacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaac |
8093862 |
T |
|
| Q |
201 |
cattggtaaccaggcaaattatcctccctatggacaaactttctttaggtacccttctggtagattttctgacggacgcatgataccagattttgtaggt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8093861 |
cattggtaaccaggcaaattatcctccctatggacaaactttctttaggtacccttctggtagattttctgacggacgcatgataccagattttgtaggt |
8093762 |
T |
|
| Q |
301 |
ac--gatttttccaaaaa |
316 |
Q |
| |
|
|| |||||||||||||| |
|
|
| T |
8093761 |
acgagatttttccaaaaa |
8093744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 11770021 - 11770090
Alignment:
| Q |
131 |
aacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaac |
200 |
Q |
| |
|
|||||| |||| |||| ||||||||||||||| |||||||| ||||||||| || || ||||||||||| |
|
|
| T |
11770021 |
aacatgttgcattatttatatttggagattcattatttgatgttggaaacaataactatatcaatacaac |
11770090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 131 - 278
Target Start/End: Original strand, 11763765 - 11763912
Alignment:
| Q |
131 |
aacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaaccattggtaaccaggcaaattatcctcccta |
230 |
Q |
| |
|
|||||| |||| |||| |||||||||||||| |||||||| ||||||||| || | ||| |||| || | || ||| ||||||||||| || || || |
|
|
| T |
11763765 |
aacatgttgcattatttgtatttggagattcattatttgatgttggaaacaataactttatcgatactactactgataatcaggcaaattacccaccata |
11763864 |
T |
|
| Q |
231 |
tggacaaactttctttaggtacccttctggtagattttctgacggacg |
278 |
Q |
| |
|
||| |||| ||||| | ||| || |||||||||||||||| ||||| |
|
|
| T |
11763865 |
tggtgaaaccttcttcaagtatccaactggtagattttctgatggacg |
11763912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 11777404 - 11777473
Alignment:
| Q |
131 |
aacatggtgcactattcatatttggagattcactatttgataatggaaacaacaattacatcaatacaac |
200 |
Q |
| |
|
|||||| |||| |||| |||||||||||||| | |||||| ||||||||| ||||| ||||||||||| |
|
|
| T |
11777404 |
aacatgctgcattatttgtatttggagattcattgtttgatgttggaaacaataattatatcaatacaac |
11777473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University