View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11574_low_2 (Length: 863)

Name: NF11574_low_2
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11574_low_2
NF11574_low_2
[»] chr5 (11 HSPs)
chr5 (10-849)||(15807444-15808283)
chr5 (164-349)||(41859542-41859727)
chr5 (153-349)||(42629498-42629694)
chr5 (153-346)||(9575310-9575503)
chr5 (189-350)||(42840417-42840578)
chr5 (170-270)||(1040119-1040219)
chr5 (294-349)||(42637359-42637414)
chr5 (156-262)||(42637224-42637330)
chr5 (654-716)||(15815386-15815451)
chr5 (654-716)||(15831701-15831766)
chr5 (292-349)||(40545121-40545178)
[»] chr8 (2 HSPs)
chr8 (89-346)||(3367655-3367912)
chr8 (17-89)||(3367529-3367598)
[»] chr2 (3 HSPs)
chr2 (371-582)||(25287071-25287282)
chr2 (156-237)||(16921102-16921183)
chr2 (288-349)||(44937800-44937861)
[»] chr7 (2 HSPs)
chr7 (89-349)||(45866864-45867124)
chr7 (296-349)||(42446349-42446402)
[»] chr1 (1 HSPs)
chr1 (497-632)||(17204357-17204497)
[»] scaffold0129 (2 HSPs)
scaffold0129 (294-349)||(10487-10542)
scaffold0129 (255-349)||(33521-33615)
[»] chr6 (1 HSPs)
chr6 (254-349)||(29131320-29131415)
[»] chr3 (2 HSPs)
chr3 (294-349)||(5162456-5162511)
chr3 (25-89)||(53691512-53691573)


Alignment Details
Target: chr5 (Bit Score: 836; Significance: 0; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 10 - 849
Target Start/End: Original strand, 15807444 - 15808283
Alignment:
Q  10 aggagcacagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaactaattgttttttctttcaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807444 aggagcacagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaactaattgttttttctttcaag 15807543  T
Q  110 cggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaac 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807544 cggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaac 15807643  T
Q  210 tcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807644 tcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatg 15807743  T
Q  310 actctttgaacccaacttcacccaaaattgatatgtgaaattttgatttcttcagtttaatttttgataaatatcaactactactacctatatatttctt 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15807744 actctttgaacccaacttcacccaaaattgatatgtgaaattttgatttcttcagtttaatttttgataaacatcaactactactacctatatatttctt 15807843  T
Q  410 cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807844 cagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaatccttcaccaaaaatcaattttcacataaaatccatttt 15807943  T
Q  510 cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15807944 cacatgcatcaaccaaccacaacaaatctaaagttcaaaaaataagacataaaatataactaccttagcatcctgatcaaacctccttaagcatcccaat 15808043  T
Q  610 agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808044 agaaccaggatcacaagcatcatatgtgtcattgaaaaatcaacataaacccaacttttattggactaaaggtaaccacacaagtacttttgaattagga 15808143  T
Q  710 ggaacaacctatgaattaggaggaacgacctatacgcactgcaacttgatcttgagtggccatgaagtaagagatatgaaatcagctaatatatgttttt 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15808144 ggaacaacctatgaattaggaggaacgacctatacgcactgcaacttgatcttgagtggccatgaagtaagagatatgaaatcagctaatatatgttttt 15808243  T
Q  810 tataatttgtagtcaacagaatcatcaactgatatatttg 849  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  15808244 tataatttgtagtcaacagaatcatcaactgatatatttg 15808283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 164 - 349
Target Start/End: Original strand, 41859542 - 41859727
Alignment:
Q  164 accaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaatagga 263  Q
    |||||| ||||| ||||||||||||||||||| |||| ||||||  |||||||||||||| | ||| || ||||| || ||||||| || ||||||||||    
T  41859542 accaaggtcttcaattctctgggtgcttaaattaaacaaaactagttcattatcctttttccggaaaaacatatctcctttcttaccaactccaatagga 41859641  T
Q  264 tgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
     | | ||   | | ||| ||||||||||  ||||||||| ||||||||||||| | |||||||||||| |||| |||||| |||||    
T  41859642 cgcttaacatcggacaacggacctacaacgaagagtttgatccatgactctttaatcccaacttcacctaaaactgatatatgaaa 41859727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 153 - 349
Target Start/End: Original strand, 42629498 - 42629694
Alignment:
Q  153 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 252  Q
    |||||||| |||||||||||||| ||| | |||||| |||||| ||| |||||||  |  |||||||||||| | ||| ||||||| || || |||| ||    
T  42629498 tcacctttgacaccaagctcttcaattttttgggtgattaaattaaaacaaactagtttgttatccttttttttcaagtatatatcaccatttttaccaa 42629597  T
Q  253 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
     |||||||||||| ||||  |  | ||| ||||| |||||||| |||||| |||||||||| || |  || |||||||||||||||||||| |||||    
T  42629598 ctccaataggatgctcaacacaggtcaacggacccacaataaaaagtttgatccatgactccttcactccgacttcacccaaaattgatatatgaaa 42629694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 153 - 346
Target Start/End: Original strand, 9575310 - 9575503
Alignment:
Q  153 tcacctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaa 252  Q
    ||||||||||||||||||||| | ||| |||||||| |||||| ||||| | |||| | ||||||||||||||| |||||||| || ||||| |||| ||    
T  9575310 tcacctttaacaccaagctctacaattttctgggtgattaaattaaacctagctaattgattatccttttttctaaagaatatgtcaccctttttaccaa 9575409  T
Q  253 ttccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtg 346  Q
     ||| |||||||| | ||       ||| ||| |||| || |||||||||||||||||||| || |  ||||||| | |||||| |||||||||    
T  9575410 ctcctataggatgcttaacatagaacaacggatctacgatgaagagtttggtccatgactccttcattccaactttatccaaaactgatatgtg 9575503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 189 - 350
Target Start/End: Original strand, 42840417 - 42840578
Alignment:
Q  189 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 288  Q
    ||||||||||||||| |||  ||||| || |||||| | |  ||||||| ||||||||| |    |||||| ||||  |||| || ||| || ||||| |    
T  42840417 cttaaatcaaaccaagctagttcattgtctttttttataatcaatatattgcccttcttccctgctccaattggatactcaaggcaaggtaagggaccaa 42840516  T
Q  289 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaat 350  Q
    ||||||||| ||| |||||||| ||||| |  |||| ||||||||||||||| |||||||||    
T  42840517 caataaagactttagtccatgattcttttacaccaagttcacccaaaattgaaatgtgaaat 42840578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 170 - 270
Target Start/End: Original strand, 1040119 - 1040219
Alignment:
Q  170 ctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttca 269  Q
    |||||| ||||| || |||||||| | |||||||||||| ||||  || |||||||| |||||||||||  |||||||||  | |||||||||||| |||    
T  1040119 ctcttcaattctttgagtgcttaagttaaaccaaactaattcatcgtcgttttttctaaagaatatatcttccttcttaccgactccaataggatgctca 1040218  T
Q  270 a 270  Q
    |    
T  1040219 a 1040219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Original strand, 42637359 - 42637414
Alignment:
Q  294 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    ||||||||||||||||| || || | ||| ||||||||||||||||||||||||||    
T  42637359 aagagtttggtccatgattccttcaccccgacttcacccaaaattgatatgtgaaa 42637414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 42637224 - 42637330
Alignment:
Q  156 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattc 255  Q
    |||||||||||||  | || |||||| || || ||||||| ||| |||||||  |||| ||| |||||||| ||||||||||| || |||||||  | ||    
T  42637224 cctttaacaccaaattgttggattctttgtgtacttaaattaaagcaaactagttcatcatcgttttttctaaagaatatatcaccattcttactcactc 42637323  T
Q  256 caatagg 262  Q
    |||||||    
T  42637324 caatagg 42637330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 716
Target Start/End: Original strand, 15815386 - 15815451
Alignment:
Q  654 ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa 716  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||||||||||||  ||||||||    
T  15815386 ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa 15815451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 654 - 716
Target Start/End: Original strand, 15831701 - 15831766
Alignment:
Q  654 ataaacccaacttttattggactaaagg----taaccacacaagtacttttgaattaggaggaacaa 716  Q
    |||||||| |||||||||| ||||||||    |||||||||||||||||||||||||  ||||||||    
T  15831701 ataaaccctacttttattg-actaaaggcaattaaccacacaagtacttttgaattacaaggaacaa 15831766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 292 - 349
Target Start/End: Complemental strand, 40545178 - 40545121
Alignment:
Q  292 taaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    |||| |||||| ||||||| || || |  |||||||||||||||||||||||||||||    
T  40545178 taaaaagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaa 40545121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 174; Significance: 4e-93; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 174; E-Value: 4e-93
Query Start/End: Original strand, 89 - 346
Target Start/End: Original strand, 3367655 - 3367912
Alignment:
Q  89 ctaattgttttttctttcaagcggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtg 188  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||| ||||||| ||||    
T  3367655 ctaattgttttttctttcaagcggcagaaggctttccttataaatcattatccggcaacacaagccacctttaacaccaagctcttcaattctctaggtg 3367754  T
Q  189 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 288  Q
    |||||||  || |||| |  ||||||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||||||| || ||| ||||||||    
T  3367755 cttaaatttaaacaaatttgctcattatctttttttctgaagaatatatcgcccttcttgccaataccaataggatgttcaatgtcacgcataggaccta 3367854  T
Q  289 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtg 346  Q
    |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  3367855 caataaagagtttggtccatgactctttgaccccaacttcacctaaaattgatatgtg 3367912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 3367529 - 3367598
Alignment:
Q  17 cagatagccaatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaac 89  Q
    |||||| ||||||||||||||| |||||||||||| ||||   |||||||||||| | ||| |||||||||||    
T  3367529 cagataaccaatatcagtaatgatgtattgccatatcatt---atgctcacaaagtaaaaactaaaataaaac 3367598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 133; Significance: 1e-68; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 371 - 582
Target Start/End: Original strand, 25287071 - 25287282
Alignment:
Q  371 ttttgataaatatcaactactactacctatatatttcttcagtttaattttattacatgactataatcctattgccttcaacaacaatcacacaactcaa 470  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||| ||||    
T  25287071 ttttgataaatatcaactactaccgcctatatatttcttcagtttaattttattacatgactctaatcctattgccttaaacaacaataacacaattcaa 25287170  T
Q  471 tccttcaccaaaaatcaattttcacataaaatccattttcacatgcatcaaccaaccacaacaaatc-taaagttcaaaaaataagacataaaatataac 569  Q
    ||||||| | |||||| ||||||||||||||||||||  ||||| |||||||| |||||||||||||  |||||| |||||| |||||||||| ||||||    
T  25287171 tccttcagcgaaaatcgattttcacataaaatccattaacacatacatcaacc-accacaacaaatcaaaaagttaaaaaaagaagacataaattataac 25287269  T
Q  570 taccttagcatcc 582  Q
    |||||||||||||    
T  25287270 taccttagcatcc 25287282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 156 - 237
Target Start/End: Complemental strand, 16921183 - 16921102
Alignment:
Q  156 cctttaacaccaagctcttcgattctctgggtgcttaaatcaaaccaaactaactcattatccttttttctgaagaatatat 237  Q
    |||||||||||||||||||| ||  | |||||  | ||||||||||| ||||  |||||||| | |||||||||||||||||    
T  16921183 cctttaacaccaagctcttcaatcatttgggtattcaaatcaaaccagactatttcattatcatcttttctgaagaatatat 16921102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 349
Target Start/End: Original strand, 44937800 - 44937861
Alignment:
Q  288 acaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    |||| ||||||||| |||||||| ||||| |  || | ||||||||||||||||||||||||    
T  44937800 acaacaaagagtttagtccatgattctttcacgccgagttcacccaaaattgatatgtgaaa 44937861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 5e-40; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 5e-40
Query Start/End: Original strand, 89 - 349
Target Start/End: Complemental strand, 45867124 - 45866864
Alignment:
Q  89 ctaattgttttttctttcaagcggtagaaggctttccttataaatcattatccggcaacatgagtcacctttaacaccaagctcttcgattctctgggtg 188  Q
    |||||||||  ||||  ||| |||||||||||||||||||||||  |||||| |||||  ||| | ||||||||||||||||||||| ||| |||| |||    
T  45867124 ctaattgttgattctggcaatcggtagaaggctttccttataaactattatctggcaaagtgaataacctttaacaccaagctcttcaattttctgtgtg 45867025  T
Q  189 cttaaatcaaaccaaactaactcattatccttttttctgaagaatatatcgcccttcttacaaattccaataggatgttcaatgccaggcaaaggaccta 288  Q
    ||||||| |||  ||||||  |||| ||| | |||||| ||||||||||| ||| |||||| ||||| ||||||||| || |  | || ||||| ||| |    
T  45867024 cttaaattaaatgaaactagttcatcatcttcttttctaaagaatatatcacccgtcttaccaattctaataggatggtcgacacaagacaaagaaccca 45866925  T
Q  289 caataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    ||||||| |||||| |||||||||| || |  |||| |||||| |||||||||||||||||    
T  45866924 caataaaaagtttgatccatgactccttcactccaatttcacctaaaattgatatgtgaaa 45866864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 296 - 349
Target Start/End: Complemental strand, 42446402 - 42446349
Alignment:
Q  296 gagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    ||||||||||||||| || ||||   ||| ||||||||||||||||||||||||    
T  42446402 gagtttggtccatgattccttgatagcaagttcacccaaaattgatatgtgaaa 42446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 497 - 632
Target Start/End: Complemental strand, 17204497 - 17204357
Alignment:
Q  497 taaaatccattttcacatgcatcaaccaaccacaacaaatcta-aagttcaaaaaataagacata-aaat-ataactaccttagcatcctgatcaaa--c 591  Q
    |||||||||||| ||||| |||||||||||||||||||||| | |||||| |||| ||||||||| |||| ||||||||||||||||||||| ||||  |    
T  17204497 taaaatccatttccacatacatcaaccaaccacaacaaatcaacaagttccaaaactaagacatacaaatcataactaccttagcatcctgaccaaactc 17204398  T
Q  592 ctccttaagcatcccaatagaaccaggatcacaagcatcat 632  Q
    || |||||  |||||||||||||||||| ||||| ||||||    
T  17204397 cttcttaaaaatcccaatagaaccaggaccacaaacatcat 17204357  T

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Target: scaffold0129 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 10542 - 10487
Alignment:
Q  294 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    |||||||| ||||| ||||| || |  |||||||||||||||||||||||||||||    
T  10542 aagagtttagtccaagactccttcacaccaacttcacccaaaattgatatgtgaaa 10487  T

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Target: scaffold0129; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 255 - 349
Target Start/End: Original strand, 33521 - 33615
Alignment:
Q  255 ccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    ||||||||||| || |||| ||| ||||| || | |||||||||||| ||||| ||||| || |  |||| |||||||||||| || ||||||||    
T  33521 ccaataggatgctcgatgcaaggtaaaggcccaataataaagagtttagtccaagactccttcacaccaagttcacccaaaatagaaatgtgaaa 33615  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 349
Target Start/End: Complemental strand, 29131415 - 29131320
Alignment:
Q  254 tccaataggatgttcaatgccaggcaaaggacctacaataaagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    |||||||||| | |||| ||||| ||| || || ||||| ||||  |||||||| || ||||| |  |||| ||||||||||||||||||||||||    
T  29131415 tccaataggacgctcaacgccagacaatggtccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaa 29131320  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 5162511 - 5162456
Alignment:
Q  294 aagagtttggtccatgactctttgaacccaacttcacccaaaattgatatgtgaaa 349  Q
    ||||||||| ||||||| || || |  |||||||||||||||||||||||||||||    
T  5162511 aagagtttgatccatgattccttcacaccaacttcacccaaaattgatatgtgaaa 5162456  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 89
Target Start/End: Complemental strand, 53691573 - 53691512
Alignment:
Q  25 caatatcagtaatggtgtattgccataacattatgatgctcacaaagcagaaagtaaaataaaac 89  Q
    ||||||||||||||||||||||| ||| || |   |||||||||||| ||||| |||||||||||    
T  53691573 caatatcagtaatggtgtattgcaataccaat---atgctcacaaagtagaaactaaaataaaac 53691512  T

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