View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11574_low_20 (Length: 333)
Name: NF11574_low_20
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 329
Target Start/End: Original strand, 39598179 - 39598491
Alignment:
| Q |
19 |
catttgttatcctttcactaggcttctcataataaaaaatactgaaccaaactttgcaacaaaaaatcttcttctaaatttgtattcgagataaagaatt |
118 |
Q |
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| T |
39598179 |
catttgttatcctttcactaggcttcgcataataaaaaatactgaaccaaactttgcaacaaaaaatcttcttctaaatttgtattcgagataaagaatt |
39598278 |
T |
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| Q |
119 |
gagattttttgtaaacaaattttcaaatgttaaagtatgtgcactttagatgtactggatttaaatcaaagtaaaacttccgccatcctcttaagatcca |
218 |
Q |
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| T |
39598279 |
gagattttttgtaaacaaattttcaaatgtaaaagtatgtgcactttagatgtactggatttaaatcaaagtaaaacttcagccatcctcttaagatcca |
39598378 |
T |
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| Q |
219 |
ctccagactagt--agtaagctccagtcaactttatttctacaaacaaaattattttcgcaagtctcgtaacataattttaagatttaaattagtcattt |
316 |
Q |
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|||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
39598379 |
ctccagactagtggagtaagctctagtcaactttatttctacaaaaaaaattattttcgcaagtgtcgtaacataattttaagatttaaattagtcattt |
39598478 |
T |
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| Q |
317 |
atctctgcttctc |
329 |
Q |
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|||| || ||||| |
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| T |
39598479 |
atctttgattctc |
39598491 |
T |
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