View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11574_low_21 (Length: 317)

Name: NF11574_low_21
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11574_low_21
NF11574_low_21
[»] chr3 (14 HSPs)
chr3 (13-298)||(6850864-6851149)
chr3 (16-298)||(6915262-6915544)
chr3 (13-298)||(6880674-6880959)
chr3 (13-298)||(6592939-6593224)
chr3 (13-291)||(6723672-6723950)
chr3 (13-291)||(6898246-6898524)
chr3 (17-291)||(7748164-7748438)
chr3 (13-296)||(6243475-6243758)
chr3 (13-298)||(6140444-6140729)
chr3 (12-269)||(6263839-6264096)
chr3 (13-269)||(6257360-6257616)
chr3 (25-269)||(13272168-13272412)
chr3 (13-298)||(6167055-6167340)
chr3 (199-298)||(6236069-6236168)


Alignment Details
Target: chr3 (Bit Score: 262; Significance: 1e-146; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 6851149 - 6850864
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6851149 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatccaaagaggaccattctagatttggaccaaagaagtctt 6851050  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6851049 caactttcaactcttcaagaaaggcacagttaaataaaatttgctctagggaggatggaatgacctgagttccgcaaaggatgactcttttcaaggtaga 6850950  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagccgccaact 298  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  6850949 tggtaactcatttatcaatatgtcatcacatctctttagttctagctcactgataatgtaaatcttgggaattgaagccgccaact 6850864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 16 - 298
Target Start/End: Original strand, 6915262 - 6915544
Alignment:
Q  16 gaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtcttcaa 115  Q
    |||||||| |||||||||||| |||||| ||  ||||||||||||||||||   |  || ||||||||||||||||||||||||||||||||||||||||    
T  6915262 gaggaagagtgccaacctgttatagttaaagcacgaagagaattacagctacacatgtccaaagaggaccattctagatttggaccaaagaagtcttcaa 6915361  T
Q  116 ctttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtagatgg 215  Q
    ||| ||| |||||||||| ||||| ||||||| |||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |||    
T  6915362 cttccaattcttcaagaatggcacagttaaataaaatttgctctagggaggatcgaatgacctgagttccacaaaggatgactcttttcaaggtagctgg 6915461  T
Q  216 tgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagccgccaact 298  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||   |  | | |||||||||||||||||||    
T  6915462 caactcatttatcaatatgtcatcacatctctttagttctagctcactgatattagcagccatcggaattgaagccgccaact 6915544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 6880674 - 6880959
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    ||||| ||||| ||||||| |||| |||||||||||||||||||||| |||||    |  || |||||||||||||||||||||||||||||||||||||    
T  6880674 aaggaagaagagtgccaacttgttatagttagagtgcgaagagaattgcagctgcacatgtccaaagaggaccattctagatttggaccaaagaagtctt 6880773  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    |||||| |||||||||||||||||||| ||| ||  |||||||||||||||  |||||||||||||||||||| |||||||||| |||||||||  ||||    
T  6880774 caacttccaactcttcaagaaaggcacagttcaacaaaatttgctctagggttgattgaatgacctgagttccacaaaggatgattcttttcaatttaga 6880873  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagccgccaact 298  Q
    |||  | ||||||||||| |||||||||||||||||||||||||||||| |||||||   |  |||||||||||||||||||||||    
T  6880874 tggcaattcatttatcaaaatgtcatcacatctctttagttctagctcagtgatattagcagccttgggaattgaagccgccaact 6880959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 6593224 - 6592939
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    ||||||||||| |||||||||||| |||||| ||||||||||||||||||||||   |  || |||||||||||||||||||||| | |||||||||| |    
T  6593224 aaggaggaagagtgccaacctgttatagttaaagtgcgaagagaattacagctacacatgtccaaagaggaccattctagatttgaatcaaagaagtcct 6593125  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    |||||| |||||||||||||||| ||| |||||||  ||||| |||||||||||||| ||||||||||||||| ||||||||||| ||||||||| | ||    
T  6593124 caacttccaactcttcaagaaagacactgttaaatagaattttctctagggaggatttaatgacctgagttccacaaaggatgacccttttcaagctgga 6593025  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagccgccaact 298  Q
    |||  | ||||||||||| ||||||||||||||||| |||||||||||| ||||||| | |  |||||||||||||||| ||||||    
T  6593024 tggatattcatttatcaaaatgtcatcacatctcttcagttctagctcagtgatattatcagccttgggaattgaagcctccaact 6592939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 6723950 - 6723672
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    ||||||||||| |||||||||||| |||||||||||||||||||||||||||||   | ||| ||||||||||||||||||||  || ||||||||||||    
T  6723950 aaggaggaagagtgccaacctgttatagttagagtgcgaagagaattacagctacacatatccaaagaggaccattctagattatgatcaaagaagtctt 6723851  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    |||||| ||||||||| |||||||||| |||||||  ||||| ||||||||||||| ||||||   ||||||| | |||||||||  |||||||||||||    
T  6723850 caacttccaactcttctagaaaggcactgttaaatagaattttctctagggaggatcgaatgatgcgagttccaccaaggatgaccgttttcaaggtaga 6723751  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagcc 291  Q
     ||  | ||||||||||| || ||||||||||||||||||||||||| ||||||||| | |  ||||||||||||||||    
T  6723750 gggcaattcatttatcaaaatatcatcacatctctttagttctagcttactgatattatcagccttgggaattgaagcc 6723672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 13 - 291
Target Start/End: Original strand, 6898246 - 6898524
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    ||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||   | ||| ||||||||||||||||||||| |||||||||||||||    
T  6898246 aaggaggaagagtgccaacctgttatagttagagtgcaaagtgaattacagctacacatatccaaagaggaccattctagattttgaccaaagaagtctt 6898345  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    ||||||  ||| ||||||||||||||| | |||||  ||||| |||||||| ||||| ||||||||||||||| ||||||||| |  |||||||| | ||    
T  6898346 caacttctaacacttcaagaaaggcactgctaaatagaattttctctagggcggattcaatgacctgagttccacaaaggatggcctttttcaagctgga 6898445  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagcc 291  Q
    |||  | ||||||||||| ||| |||||||||||||||||||||||||||||||||| | |  ||||||||||||||||    
T  6898446 tggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattatcagccttgggaattgaagcc 6898524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 7748164 - 7748438
Alignment:
Q  17 aggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtcttcaac 116  Q
    ||||||| |||||||||||| |||||||| ||||||||||||||||||||   | |||  ||||||||||||||| ||||||||||||||||||||||||    
T  7748164 aggaagagtgccaacctgttatagttagactgcgaagagaattacagctacacatatccgaagaggaccattctaaatttggaccaaagaagtcttcaac 7748263  T
Q  117 tttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtagatggt 216  Q
    || ||||| ||||||||| || | ||||||| |||||| |||||||| ||||| |||||||  ||  || ||||||||||| ||||||||| |||||||     
T  7748264 ttccaacttttcaagaaaagcgctgttaaataaaattttctctagggtggattcaatgacccaagacccacaaaggatgacccttttcaagctagatggc 7748363  T
Q  217 gactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagcc 291  Q
     | |||||||| || ||| |||||||||||||||||||||| ||||||||||| | |  ||||||||||||||||    
T  7748364 aattcatttattaaaatgccatcacatctctttagttctaggtcactgatattatcagccttgggaattgaagcc 7748438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 296
Target Start/End: Original strand, 6243475 - 6243758
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    ||||||||||| ||||||| |||| | |||| ||||||||||||||||||||||   | ||| ||||||||||||||||||||| |||||||||||||||    
T  6243475 aaggaggaagagtgccaacttgttatggttaaagtgcgaagagaattacagctacgcatatccaaagaggaccattctagattttgaccaaagaagtctt 6243574  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    |||||| ||| ||||||||||||| || |||||||  ||||| |||||||| ||||| ||||| ||||||||| |||||||||||  |||||||| | ||    
T  6243575 caacttccaattcttcaagaaaggtactgttaaatagaattttctctagggcggattcaatgatctgagttccacaaaggatgacctttttcaagttgga 6243674  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagccgccaa 296  Q
    ||   | | ||||||||| ||| |||||||||||||||||||||||| | ||||||| |||    |||||||||||||| ||||    
T  6243675 tgacaatttatttatcaaaatgccatcacatctctttagttctagctgaatgatattataagcaatgggaattgaagcctccaa 6243758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 6140444 - 6140729
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    ||||| ||||| |||||||||||| |||||| ||||||||| |||| |||||||   | ||  |||||||||||||| | |||| |||||||||||||||    
T  6140444 aaggaagaagagtgccaacctgttatagttaaagtgcgaagggaataacagctacacatatacaaagaggaccattccatattttgaccaaagaagtctt 6140543  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    |||||| ||||||||||||||||||||  |||| |  || || |||||||| ||||| |||||| |||||||| ||||||||| | ||||||||| | ||    
T  6140544 caacttccaactcttcaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagttccacaaaggatggcccttttcaagcttga 6140643  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagccgccaact 298  Q
    |||  | ||||||||||| ||| |||||||||||||||||||||  |||||||||||   |  |||||||||||||||| ||||||    
T  6140644 tggcaattcatttatcaaaatgccatcacatctctttagttctatatcactgatattagcagccttgggaattgaagcctccaact 6140729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 269
Target Start/End: Original strand, 6263839 - 6264096
Alignment:
Q  12 aaaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtct 111  Q
    |||||| ||||| |||||||||||| |||||| ||||||||| ||||||||||||   | ||  ||||||||||||||||||||||||||||||||||||    
T  6263839 aaaggaagaagagtgccaacctgttatagttaaagtgcgaagggaattacagctacacatattcaaagaggaccattctagatttggaccaaagaagtct 6263938  T
Q  112 tcaactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtag 211  Q
    ||||||| ||  |||||||||||||||| | ||| |  ||||| |||||||| || || |||||| |||||||| ||||||||| | |||| |||| | |    
T  6263939 tcaacttccagttcttcaagaaaggcactgctaactagaattttctctagggtggtttcaatgacatgagttccacaaaggatggccctttccaagcttg 6264038  T
Q  212 atggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatatt 269  Q
    ||||  | | |||||| || ||| |||||||||||||||| ||||  |||||||||||    
T  6264039 atggcaatttatttataaaaatgccatcacatctctttagctctatatcactgatatt 6264096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 13 - 269
Target Start/End: Original strand, 6257360 - 6257616
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    ||||| ||||| |||||||||||| |||||||||||| ||| |||| |||||||   | ||  |||||||||||||| | |||| |||||||||||||||    
T  6257360 aaggaagaagagtgccaacctgttatagttagagtgcaaagggaataacagctacacacatgcaaagaggaccattccatatttcgaccaaagaagtctt 6257459  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    |||||| ||||||||||||||||||||  |||| |  || || |||||||| ||||| |||||| ||||| || ||||||||| |  |||||||| | ||    
T  6257460 caacttccaactcttcaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagtgccacaaaggatggccgttttcaagcttga 6257559  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatatt 269  Q
    |||  | ||||||||||| ||| |||||||||||||||||||||  |||||||||||    
T  6257560 tggcaattcatttatcaaaatgccatcacatctctttagttctatatcactgatatt 6257616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 25 - 269
Target Start/End: Complemental strand, 13272412 - 13272168
Alignment:
Q  25 tgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtcttcaactttcaact 124  Q
    |||||||||||| |||||| ||||||||| |||||||| |||   | ||| ||||||||||||||||||||||||||||||||||||||||||| ||  |    
T  13272412 tgccaacctgttatagttaaagtgcgaagggaattacaactacacatatccaaagaggaccattctagatttggaccaaagaagtcttcaacttccagtt 13272313  T
Q  125 cttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtagatggtgactcatt 224  Q
    |||||||||||| ||   ||| |  ||||| |||||||| |  || |||||| |||||||| ||||||||| | ||||||||| | |||||  | |||||    
T  13272312 cttcaagaaagggactactaactagaattttctctagggtgatttcaatgacatgagttccacaaaggatggcccttttcaagcttgatggcaattcatt 13272213  T
Q  225 tatcaatatgtcatcacatctctttagttctagctcactgatatt 269  Q
    ||| || ||| |||||||||||||||||||||  |||||||||||    
T  13272212 tataaaaatgccatcacatctctttagttctatatcactgatatt 13272168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 13 - 298
Target Start/End: Original strand, 6167055 - 6167340
Alignment:
Q  13 aaggaggaagaatgccaacctgttgtagttagagtgcgaagagaattacagctattgaaatctaaagaggaccattctagatttggaccaaagaagtctt 112  Q
    ||||| ||||| |||||||||||| |||||| ||||||||| |||| |||||||   | ||  |||||| ||||||| | |||| |||||||||||||||    
T  6167055 aaggaagaagagtgccaacctgttatagttaaagtgcgaagggaataacagctacacatatacaaagagaaccattccatatttcgaccaaagaagtctt 6167154  T
Q  113 caactttcaactcttcaagaaaggcacggttaaatgaaatttgctctagggaggattgaatgacctgagttccgcaaaggatgactcttttcaaggtaga 212  Q
    |||||| |||||||| |||||||||||  |||| |  || || |||||||| ||||| |||||| |||||||| ||||||||| | ||| |||||   ||    
T  6167155 caacttccaactctttaagaaaggcactattaattagaactttctctagggtggattcaatgacgtgagttccacaaaggatggcccttatcaagcatga 6167254  T
Q  213 tggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagccgccaact 298  Q
    |||  | ||||||||| | ||| |||||||||||||||||||||  |||||||||||   |  |||||||||||||||| ||||||    
T  6167255 tggcaattcatttatcgaaatgccatcacatctctttagttctatatcactgatattagcagccttgggaattgaagcctccaact 6167340  T

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Target: chr3; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 298
Target Start/End: Original strand, 6236069 - 6236168
Alignment:
Q  199 cttttcaaggtagatggtgactcatttatcaatatgtcatcacatctctttagttctagctcactgatattgtaaatcttgggaattgaagccgccaact 298  Q
    ||||||||||| |||||  | ||||||||||| ||| ||||||||||||||||||||||||||||||||||   |  |||||||||||| ||| ||||||    
T  6236069 cttttcaaggtggatggcaattcatttatcaaaatgccatcacatctctttagttctagctcactgatattaccagccttgggaattgacgcctccaact 6236168  T

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