View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11574_low_5 (Length: 616)

Name: NF11574_low_5
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11574_low_5
NF11574_low_5
[»] chr2 (16 HSPs)
chr2 (19-567)||(23948009-23948577)
chr2 (460-559)||(5998037-5998140)
chr2 (460-525)||(7634592-7634656)
chr2 (466-524)||(9620881-9620938)
chr2 (460-580)||(41398932-41399059)
chr2 (460-525)||(33891817-33891881)
chr2 (464-525)||(39952308-39952368)
chr2 (466-556)||(32918447-32918541)
chr2 (460-514)||(6201266-6201319)
chr2 (460-514)||(21200225-21200278)
chr2 (460-514)||(21202423-21202476)
chr2 (460-525)||(3330835-3330899)
chr2 (460-525)||(14660326-14660390)
chr2 (460-525)||(28176197-28176261)
chr2 (460-525)||(32493719-32493782)
chr2 (460-524)||(41670261-41670324)
[»] chr7 (15 HSPs)
chr7 (460-580)||(24875620-24875747)
chr7 (460-557)||(24862035-24862136)
chr7 (460-559)||(28606536-28606639)
chr7 (460-525)||(9157603-9157667)
chr7 (461-575)||(28918831-28918949)
chr7 (460-525)||(28336995-28337059)
chr7 (463-559)||(39679267-39679367)
chr7 (460-527)||(30295289-30295355)
chr7 (463-514)||(40952269-40952319)
chr7 (464-514)||(48268856-48268905)
chr7 (464-522)||(25318174-25318229)
chr7 (460-522)||(8320093-8320154)
chr7 (460-580)||(37597459-37597585)
chr7 (460-514)||(45234437-45234490)
chr7 (483-524)||(43094555-43094596)
[»] chr1 (16 HSPs)
chr1 (460-559)||(34331431-34331534)
chr1 (460-559)||(25892070-25892173)
chr1 (460-556)||(12628525-12628626)
chr1 (460-559)||(41812178-41812281)
chr1 (460-525)||(43413518-43413582)
chr1 (460-580)||(36699869-36699996)
chr1 (460-580)||(36715973-36716100)
chr1 (464-525)||(15801906-15801966)
chr1 (460-525)||(51161980-51162044)
chr1 (460-559)||(29152974-29153077)
chr1 (460-514)||(13573086-13573139)
chr1 (485-580)||(12880494-12880597)
chr1 (483-559)||(25900720-25900801)
chr1 (464-507)||(47792702-47792744)
chr1 (460-525)||(23027073-23027137)
chr1 (460-524)||(33015124-33015187)
[»] chr6 (5 HSPs)
chr6 (468-559)||(7793056-7793151)
chr6 (460-525)||(17186917-17186981)
chr6 (461-559)||(30792754-30792856)
chr6 (460-559)||(12650248-12650351)
chr6 (460-514)||(21381583-21381636)
[»] chr3 (10 HSPs)
chr3 (461-559)||(47257369-47257471)
chr3 (460-559)||(19680856-19680959)
chr3 (463-521)||(21891868-21891925)
chr3 (460-520)||(29251207-29251266)
chr3 (460-514)||(12113486-12113539)
chr3 (460-525)||(35924739-35924803)
chr3 (460-525)||(45406339-45406403)
chr3 (460-503)||(17578713-17578755)
chr3 (460-507)||(26504897-26504943)
chr3 (465-514)||(36734945-36734993)
[»] chr8 (8 HSPs)
chr8 (460-525)||(32821790-32821854)
chr8 (460-525)||(41636578-41636642)
chr8 (460-559)||(44400599-44400702)
chr8 (464-525)||(45364402-45364462)
chr8 (466-525)||(21511485-21511543)
chr8 (482-524)||(2074214-2074256)
chr8 (461-507)||(31801142-31801187)
chr8 (460-525)||(17934442-17934506)
[»] chr5 (17 HSPs)
chr5 (460-525)||(36977592-36977656)
chr5 (460-525)||(10192769-10192833)
chr5 (461-556)||(865780-865879)
chr5 (462-514)||(5841504-5841555)
chr5 (463-514)||(10378684-10378734)
chr5 (464-514)||(26244336-26244385)
chr5 (461-561)||(394184-394288)
chr5 (464-525)||(9771683-9771743)
chr5 (460-525)||(13146321-13146385)
chr5 (465-514)||(15834712-15834760)
chr5 (460-525)||(15936874-15936938)
chr5 (465-525)||(32270270-32270329)
chr5 (460-507)||(43583679-43583725)
chr5 (482-524)||(2068501-2068543)
chr5 (460-514)||(42522301-42522354)
chr5 (462-514)||(35286195-35286246)
chr5 (460-524)||(38580092-38580155)
[»] chr4 (5 HSPs)
chr4 (460-525)||(24968586-24968650)
chr4 (460-524)||(50680003-50680066)
chr4 (460-514)||(35321414-35321467)
chr4 (460-514)||(47606824-47606876)
chr4 (460-525)||(37874713-37874777)
[»] scaffold0006 (1 HSPs)
scaffold0006 (463-507)||(160826-160869)
[»] scaffold0024 (1 HSPs)
scaffold0024 (460-506)||(42073-42118)


Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 567
Target Start/End: Original strand, 23948009 - 23948577
Alignment:
Q  19 ataggaacagtgctaacttatttaccaagtgatgcttatagtgtgttcaggtcagagatgattagaacaaatcataatcttacagtgaagccaagatatg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23948009 ataggaacagtgctaacttatttaccaagtgatgcttatagtgtgttcaggtcagagatgcttagaacaaatcataatcttacagtgaagccaagatatg 23948108  T
Q  119 aagggttagagttttgttataaagatgattcatctaatgtatttccaattattgaacttcactttcaaaatggtaatattgcaggtgaaaattttgtgtc 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23948109 aagggttagagttttgttataaagatgattcatctaatgtatttccaactattgaacttcactttcaaaatggtaatattgcaggtgaaaattttgtgtc 23948208  T
Q  219 ttacaagttgaacaagaaacaactactcttcacaccagaagaaggcactgtttgtctatcatttgcagaaggaaaaagttctgctcttactgtgattgga 318  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23948209 ttacaagttgaacaagaaacaactactcttaacaccagaagaaggcactgtttgtctatcatttgcagaaggaaaaagttctgctcttactgtgattgga 23948308  T
Q  319 agcaaccaactccagggaactttattgacgtatgatctagtcaatgagatccttgttcttacatttagcaagtgttaggagattagcagaacattggttg 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  23948309 agcaaccaactccagggaactttattgacgtatgatctagtcaatgagatccttgttcttacatttaataagtgttaggagattagcagaacattggttg 23948408  T
Q  419 tttaattgatgtattac----------------ctgtcattaatcactct----nnnnnnntatgtgatttttactatgtaagaatctctaacaatgaat 498  Q
    |||||||||||||||||                |||||||||||||||||           |||||||||||| |||||||| |||||||||||||||||    
T  23948409 tttaattgatgtattaccatctgtataactcttctgtcattaatcactctgaaaaaatatgtatgtgatttttcctatgtaaaaatctctaacaatgaat 23948508  T
Q  499 atttaagttggtgaataccaaaatctcatacttatgctaaatgagtttgaaataacttctatttttaag 567  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23948509 atttaagttggtgaataccaaaatctcatacttatgctaaatgagtttgaaataacttctatttttaag 23948577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 5998037 - 5998140
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||  ||||||||| |     ||||||  |||||||||||||||||||    
T  5998037 tatgtaatttttactatgtaa-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatattaaatgagtttgaaataac 5998135  T
Q  555 ttcta 559  Q
    |||||    
T  5998136 ttcta 5998140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 7634656 - 7634592
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||| |||||||||    
T  7634656 tatgtgctttttactatgtaa-aatctcaaacaatgaatatttaagttagtgaatatcaaaatctc 7634592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 466 - 524
Target Start/End: Complemental strand, 9620938 - 9620881
Alignment:
Q  466 atttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatct 524  Q
    ||||||||||||||| |||||| ||||||||||||||||||| |||||| |||||||||    
T  9620938 atttttactatgtaa-aatctcgaacaatgaatatttaagttagtgaatgccaaaatct 9620881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 580
Target Start/End: Complemental strand, 41399059 - 41398932
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    |||||| |||||||||||||| |||||| ||||||||||||||||||| ||||||  ||| ||||| |     ||||||   ||||||||||||||||||    
T  41399059 tatgtggtttttactatgtaa-aatctcgaacaatgaatatttaagttagtgaatttcaagatctcttttttgacttatatcaaatgagtttgaaataac 41398961  T
Q  555 tt---ctatttttaagttaatttcaaaaa 580  Q
    ||   |||||||||||| ||||| |||||    
T  41398960 ttttactatttttaagtaaatttaaaaaa 41398932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 33891817 - 33891881
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||| ||||||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  33891817 tatgtgatttttattatgtaa-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctc 33891881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 39952308 - 39952368
Alignment:
Q  464 tgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||||||  |||||||||    
T  39952308 tgatttttaatatgtaa-aatctcgaacaatgaatatttaagttggtgaatgtcaaaatctc 39952368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 466 - 556
Target Start/End: Complemental strand, 32918541 - 32918447
Alignment:
Q  466 atttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataactt 556  Q
    ||||||||||||||| |||||| ||||||||||||||| |||  |||||  |||||||||||     |||||| | ||||||||||||||||||||    
T  32918541 atttttactatgtaa-aatctcgaacaatgaatatttaggttaatgaatgtcaaaatctcatttttaacttataccaaatgagtttgaaataactt 32918447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 6201319 - 6201266
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||    
T  6201319 tatgtgatttttactatgtaa-aatctcgaacaatgaacatttaagttagtgaat 6201266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 21200225 - 21200278
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||    
T  21200225 tatgtgatttttactatgtaa-aatctcgaacaatgaatattcaagttagtgaat 21200278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 21202476 - 21202423
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||| ||||||    
T  21202476 tatgtgatttttactatgtaa-aatctcgaacaatgaatattcaagttagtgaat 21202423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 3330835 - 3330899
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||| ||| |||||| || |||||||||||||||| ||||||  |||||||||    
T  3330835 tatgtgatttttactatataa-aatctcgaataatgaatatttaagttagtgaatgtcaaaatctc 3330899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 14660390 - 14660326
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||  ||| |||||| |||||| |||||||||||| || |||| |||||||||    
T  14660390 tatgtgatttttactaaataa-aatctcgaacaataaatatttaagttagtaaatatcaaaatctc 14660326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 28176261 - 28176197
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    |||||||||| ||| |||||| |||||| |||||||||||||||||||  |||||  |||||||||    
T  28176261 tatgtgatttataccatgtaa-aatctcgaacaatgaatatttaagttaatgaatgtcaaaatctc 28176197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 32493719 - 32493782
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||| ||||||||||||||| |||||| ||||||||||| ||||||| ||||||  |||||||||    
T  32493719 tatgtaatttttactatgtaa-aatctcgaacaatgaata-ttaagttagtgaatgtcaaaatctc 32493782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 41670261 - 41670324
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatct 524  Q
    ||||||||||||| ||||||| ||| || |||||||||||||||||||  |||||  ||||||||    
T  41670261 tatgtgatttttattatgtaa-aatttcaaacaatgaatatttaagttaatgaatgtcaaaatct 41670324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 460 - 580
Target Start/End: Complemental strand, 24875747 - 24875620
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||| || ||| ||||||||||||     |||||||||||||||||||||||||||    
T  24875747 tatgtgatttttactatgtaa-aatatctaacaatgaatatttaagttagtaaatgccaaaatctcatttttaacttatgctaaatgagtttgaaataac 24875649  T
Q  555 tt---ctatttttaagttaatttcaaaaa 580  Q
    ||   |||||||||||| |||||| ||||    
T  24875648 ttccactatttttaagtaaatttctaaaa 24875620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 460 - 557
Target Start/End: Original strand, 24862035 - 24862136
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||||||| ||| |||||||||||||||||||||| |||||| ||||||||||||     |||||| ||||||||||||||||||||    
T  24862035 tatgtgatttttactatgtaa-aatatctaacaatgaatatttaagttagtgaatgccaaaatctcatttttaacttatactaaatgagtttgaaataac 24862133  T
Q  555 ttc 557  Q
    |||    
T  24862134 ttc 24862136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 559
Target Start/End: Complemental strand, 28606639 - 28606536
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||   |||||||| |     |||||| | ||||||||||||||||||    
T  28606639 tatgtgatttttactatgtaa-aatctcgaacaatgaatatttaagttcgtgaatgtaaaaatctcttttttaacttataccaaatgagtttgaaataac 28606541  T
Q  555 ttcta 559  Q
    |||||    
T  28606540 ttcta 28606536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 9157667 - 9157603
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  9157667 tatgtgatttttactatgtaa-aatctcaaacaatgaatatttaagttagtgaatgtcaaaatctc 9157603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 461 - 575
Target Start/End: Complemental strand, 28918949 - 28918831
Alignment:
Q  461 atgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat-accaaaatctcat----acttatgctaaatgagtttgaaataact 555  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| | ||||||  | |||||||| |    |||||||  |||||||||||||||||||    
T  28918949 atgtgatttttattatgtaa-aatctctaacaatgaatatttaagatagtgaatgtcaaaaatctctttttaacttatgacaaatgagtttgaaataact 28918851  T
Q  556 tctatttttaagttaatttc 575  Q
    | || | |||||| ||||||    
T  28918850 tatactattaagtaaatttc 28918831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 28336995 - 28337059
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||  ||||||||||||||||||| ||||||  |||||||||    
T  28336995 tatgtgatttttactatgtaa-aatcttgaacaatgaatatttaagttagtgaatgtcaaaatctc 28337059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 463 - 559
Target Start/End: Original strand, 39679267 - 39679367
Alignment:
Q  463 gtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataacttc 557  Q
    |||||||||||| ||||| ||||||||||||| ||||||||||||  |||||  |||||||||||     |||||||  |||||| ||||||||||||||    
T  39679267 gtgatttttactttgtaa-aatctctaacaattaatatttaagttaatgaatgtcaaaatctcatttttaacttatgtaaaatgaatttgaaataacttc 39679365  T
Q  558 ta 559  Q
    ||    
T  39679366 ta 39679367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 460 - 527
Target Start/End: Original strand, 30295289 - 30295355
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat 527  Q
    ||||||||||||||||||||| |||| |||||||||||||||||| ||  |||||  |||||||||||    
T  30295289 tatgtgatttttactatgtaa-aatcactaacaatgaatatttaaattaatgaatgtcaaaatctcat 30295355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 40952319 - 40952269
Alignment:
Q  463 gtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    |||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  40952319 gtgatttttactatgtaa-aatatctaacaatgaatatttaagttagtgaat 40952269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 514
Target Start/End: Original strand, 48268856 - 48268905
Alignment:
Q  464 tgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  48268856 tgatttttactatgtaa-aatctcaaacaatgaatatttaagttagtgaat 48268905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 522
Target Start/End: Original strand, 25318174 - 25318229
Alignment:
Q  464 tgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaat 522  Q
    ||||||||||||||||| ||||||||||||||||||  |||||| |||||| |||||||    
T  25318174 tgatttttactatgtaa-aatctctaacaatgaata--taagttagtgaatgccaaaat 25318229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 522
Target Start/End: Original strand, 8320093 - 8320154
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaat 522  Q
    ||||||||||||||||||||| ||| |  || |||||||||||||||| ||||||| ||||||    
T  8320093 tatgtgatttttactatgtaa-aattttgaaaaatgaatatttaagttagtgaatatcaaaat 8320154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 580
Target Start/End: Original strand, 37597459 - 37597585
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||||| ||| ||  ||||||||| |     ||| ||   ||||||||||||||||||    
T  37597459 tatgtgatttttactatgtaa-aatctcgaacaat-aatatttaagttagtggatgtcaaaatctcttttttaactcatatcaaatgagtttgaaataac 37597556  T
Q  555 tt---ctatttttaagttaatttcaaaaa 580  Q
    ||   |||||||| ||| |||||||||||    
T  37597557 ttttactatttttgagtaaatttcaaaaa 37597585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 45234490 - 45234437
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||| ||||||||||||||| |||||| |||||| |||||||||||| ||||||    
T  45234490 tatgtaatttttactatgtaa-aatctcgaacaataaatatttaagttagtgaat 45234437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 524
Target Start/End: Complemental strand, 43094596 - 43094555
Alignment:
Q  483 atctctaacaatgaatatttaagttggtgaataccaaaatct 524  Q
    ||||| ||||||||||||||||||| ||||||| ||||||||    
T  43094596 atctcgaacaatgaatatttaagttagtgaatatcaaaatct 43094555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 460 - 559
Target Start/End: Complemental strand, 34331534 - 34331431
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||| | ||||||||||     ||||||| ||||||||||||||||||     
T  34331534 tatgtgatttttactatgtaa-aatctctaacaatgaatatttaagttagtgaatgctaaaatctcatttttaacttatgttaaatgagtttgaaataat 34331436  T
Q  555 ttcta 559  Q
    |||||    
T  34331435 ttcta 34331431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 25892070 - 25892173
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    |||| |||||||||||||||| ||| |||||||||||||||||||||| ||||||  | |||||||||     |||||||| ||||||||||||||||||    
T  25892070 tatgcgatttttactatgtaa-aatttctaacaatgaatatttaagttagtgaatgtcgaaatctcatttttaacttatgccaaatgagtttgaaataac 25892168  T
Q  555 ttcta 559  Q
    |||||    
T  25892169 ttcta 25892173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 460 - 556
Target Start/End: Complemental strand, 12628626 - 12628525
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||| | ||||||  |||||||||||     ||||||| ||||| | |||||||||||    
T  12628626 tatgtgatttttactatttaaaaatctctaacaatgaatatttaagctagtgaatgtcaaaatctcatttttaacttatgttaaattattttgaaataac 12628527  T
Q  555 tt 556  Q
    ||    
T  12628526 tt 12628525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 41812178 - 41812281
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||| ||||||||||||||| |||||| || |||||||||||||||| ||||||  ||||||||| |     |||||| ||||||||||||||||||||    
T  41812178 tatgtaatttttactatgtaa-aatctcgaagaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatactaaatgagtttgaaataac 41812276  T
Q  555 ttcta 559  Q
    |||||    
T  41812277 ttcta 41812281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 43413518 - 43413582
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||| |||||||||    
T  43413518 tatgtgatttttactgtgtaa-aatctcaaacaatgaatatttaagttagtgaatatcaaaatctc 43413582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 580
Target Start/End: Complemental strand, 36699996 - 36699869
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| || ||||||  ||||||||| |     ||||||   ||||||||||||||||||    
T  36699996 tatgtgatttttactatgtaa-aatctcgaacaatgaatatttaaattagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataac 36699898  T
Q  555 tt---ctatttttaagttaatttcaaaaa 580  Q
    ||   |||||||| ||| ||||| |||||    
T  36699897 ttttactatttttgagtaaatttaaaaaa 36699869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 460 - 580
Target Start/End: Complemental strand, 36716100 - 36715973
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||||||| |||||| |||||||||||||||| || ||||||  ||||||||| |     ||||||   ||||||||||||||||||    
T  36716100 tatgtgatttttactatgtaa-aatctcgaacaatgaatatttaaattagtgaatgtcaaaatctcttttttaacttatatcaaatgagtttgaaataac 36716002  T
Q  555 tt---ctatttttaagttaatttcaaaaa 580  Q
    ||   |||||||| ||| ||||| |||||    
T  36716001 ttttactatttttgagtaaatttaaaaaa 36715973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 15801966 - 15801906
Alignment:
Q  464 tgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||| |||||| |||| |||||||||||||| |||||| ||||||||||    
T  15801966 tgatttttactatgtaa-aatctcgaacagtgaatatttaagttagtgaatgccaaaatctc 15801906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 51161980 - 51162044
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||| | |||||| ||||||||||||||||||| ||||||  |||||||||    
T  51161980 tatgtgatttttactatgtta-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctc 51162044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 29152974 - 29153077
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||||| ||||||  |||||| |  |     |||||| | ||||||||||||||||||    
T  29152974 tatgtgatttttactatgtaa-aatctcaaacaatgaatatataagttagtgaatgtcaaaatattttttttaacttataccaaatgagtttgaaataac 29153072  T
Q  555 ttcta 559  Q
    |||||    
T  29153073 ttcta 29153077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 13573139 - 13573086
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||    
T  13573139 tatgtgatttttactatttaa-aatctcgaacaatgaatatttaagttagtgaat 13573086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 485 - 580
Target Start/End: Original strand, 12880494 - 12880597
Alignment:
Q  485 ctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataactt---ctatttttaagttaatttca 576  Q
    ||||||| ||||||||||||||| ||| || |||||||| |||     |||||||||||| ||||||||||||||||   |||||||| ||| ||||||     
T  12880494 ctctaaccatgaatatttaagttagtgcatgccaaaatcacatttttaacttatgctaaacgagtttgaaataacttttactatttttgagtaaatttct 12880593  T
Q  577 aaaa 580  Q
    ||||    
T  12880594 aaaa 12880597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 483 - 559
Target Start/End: Original strand, 25900720 - 25900801
Alignment:
Q  483 atctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataacttcta 559  Q
    ||||||||||||||||||||||||| | |||| ||||||| ||||     |||| ||| ||||||||||||| |||||||||    
T  25900720 atctctaacaatgaatatttaagttagggaatgccaaaatatcatttttaacttgtgcgaaatgagtttgaactaacttcta 25900801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 507
Target Start/End: Original strand, 47792702 - 47792744
Alignment:
Q  464 tgatttttactatgtaagaatctctaacaatgaatatttaagtt 507  Q
    ||||||||||||||||| |||||| |||||||||||||||||||    
T  47792702 tgatttttactatgtaa-aatctcgaacaatgaatatttaagtt 47792744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 23027073 - 23027137
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||  ||||||||| |||||||||  |||||  |||||||||    
T  23027073 tatgtgatttttactatgtaa-aatcttgaacaatgaacatttaagttaatgaatgtcaaaatctc 23027137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 524
Target Start/End: Complemental strand, 33015187 - 33015124
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatct 524  Q
    |||||||||||||||||| || |||||| ||||||||| |||||||||  |||||  ||||||||    
T  33015187 tatgtgatttttactatgcaa-aatctcgaacaatgaacatttaagttaatgaatgtcaaaatct 33015124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 468 - 559
Target Start/End: Complemental strand, 7793151 - 7793056
Alignment:
Q  468 ttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataacttcta 559  Q
    ||||| ||||||| |||||||||| ||||||||||||||| ||||||  |||||||||||     |||||||||||||||||||||||| |||||||    
T  7793151 ttttattatgtaa-aatctctaacgatgaatatttaagttagtgaatgtcaaaatctcatttataacttatgctaaatgagtttgaaattacttcta 7793056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 17186917 - 17186981
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  17186917 tatgtgatttttactatgtaa-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctc 17186981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 461 - 559
Target Start/End: Complemental strand, 30792856 - 30792754
Alignment:
Q  461 atgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataact 555  Q
    |||| ||||||||||||||| |||||| || ||| |||||||||||| ||||||  ||||||||| |     |||||| |||||||||||||||||||||    
T  30792856 atgtaatttttactatgtaa-aatctcgaataataaatatttaagttagtgaatgtcaaaatctcttttttaacttatactaaatgagtttgaaataact 30792758  T
Q  556 tcta 559  Q
    ||||    
T  30792757 tcta 30792754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 12650248 - 12650351
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcatacttatgct------aaatgagtttgaaataa 553  Q
    |||||||||||||| |||||| ||| || |||||||||||| |||||| ||||||  ||||||||| | |||| |||      |||||||||||||||||    
T  12650248 tatgtgatttttacgatgtaa-aatttcgaacaatgaatatgtaagttagtgaatgtcaaaatctctttctta-gcttatatcaaatgagtttgaaataa 12650345  T
Q  554 cttcta 559  Q
    ||||||    
T  12650346 cttcta 12650351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 21381583 - 21381636
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||||||| ||| || |||||||||||||||| || ||||||    
T  21381583 tatgtgatttttactatgtaa-aatttcgaacaatgaatatttaaattagtgaat 21381636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 461 - 559
Target Start/End: Complemental strand, 47257471 - 47257369
Alignment:
Q  461 atgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataact 555  Q
    |||||||||||||||||||| ||||| |||||||||||||||||| | |||| | ||||||| ||||     ||||||| ||||| ||||||||||||||    
T  47257471 atgtgatttttactatgtaa-aatctttaacaatgaatatttaagctagtgagtgccaaaatttcatttttaacttatgttaaattagtttgaaataact 47257373  T
Q  556 tcta 559  Q
    ||||    
T  47257372 tcta 47257369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 19680856 - 19680959
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    |||||||| |||||||||||| || ||| ||||||||||||||||||| ||||||| ||||||||| |     |||||| | |||||||||||||| |||    
T  19680856 tatgtgatatttactatgtaa-aagctcgaacaatgaatatttaagttagtgaatatcaaaatctcttttttaacttataccaaatgagtttgaaaaaac 19680954  T
Q  555 ttcta 559  Q
    |||||    
T  19680955 ttcta 19680959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 463 - 521
Target Start/End: Original strand, 21891868 - 21891925
Alignment:
Q  463 gtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaa 521  Q
    |||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||    
T  21891868 gtgatttttactatgtaa-aatctctaacaatgaatatttaagttagtaaatacgaaaa 21891925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 520
Target Start/End: Complemental strand, 29251266 - 29251207
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaa 520  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||||  ||||| |||||    
T  29251266 tatgtgatctttactatgtaa-aatctctaacaatgaatatttaagttaatgaatgccaaa 29251207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 12113486 - 12113539
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||    
T  12113486 tatgtgatttttactatgtaa-aatctcgagcaatgaatatttaagttagtgaat 12113539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 35924803 - 35924739
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||| ||||||||| ||||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  35924803 tatgtaatttttactgtgtaa-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctc 35924739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 45406403 - 45406339
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||| |||||||||||| |||| | ||||||  |||||||||    
T  45406403 tatgtgatttttactatgtaa-aatctcgaacaatgaatatataagatagtgaatgtcaaaatctc 45406339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 503
Target Start/End: Complemental strand, 17578755 - 17578713
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatattta 503  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  17578755 tatgtgatttttactatgtaa-aatctcgaacaatgaatattta 17578713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 507
Target Start/End: Complemental strand, 26504943 - 26504897
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagtt 507  Q
    ||||||||||||||| ||||| |||||| |||||||||||||||||||    
T  26504943 tatgtgatttttactctgtaa-aatctcgaacaatgaatatttaagtt 26504897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 36734993 - 36734945
Alignment:
Q  465 gatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    |||||||||||||||| |||||| ||||||||||||||| ||| ||||||    
T  36734993 gatttttactatgtaa-aatctcgaacaatgaatatttatgttagtgaat 36734945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 32821790 - 32821854
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    |||||||||||||||| |||| |||||| ||||||||||||||||||| ||||||| |||||||||    
T  32821790 tatgtgatttttactaagtaa-aatctcgaacaatgaatatttaagttagtgaatatcaaaatctc 32821854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 41636578 - 41636642
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||| ||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  41636578 tatgtgatttttactatctaa-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctc 41636642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 559
Target Start/End: Original strand, 44400599 - 44400702
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataac 554  Q
    ||||||||||||| ||| ||| ||||||||||| |||||||||||||| |||||| ||||||| ||||     |  |||| |||||||||||||||| ||    
T  44400599 tatgtgatttttattatataa-aatctctaacagtgaatatttaagttagtgaatgccaaaatttcatttttaatctatgttaaatgagtttgaaatgac 44400697  T
Q  555 ttcta 559  Q
    |||||    
T  44400698 ttcta 44400702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 525
Target Start/End: Original strand, 45364402 - 45364462
Alignment:
Q  464 tgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||| |||||| |||||| |||||||||||| ||||||  |||||||||    
T  45364402 tgatttttactatgtaa-aatctcgaacaattaatatttaagttagtgaatgtcaaaatctc 45364462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 466 - 525
Target Start/End: Complemental strand, 21511543 - 21511485
Alignment:
Q  466 atttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||| |||||| |||||| |||||||||||| ||||||  |||||||||    
T  21511543 atttttactatgtaa-aatctcaaacaattaatatttaagttagtgaatgtcaaaatctc 21511485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 2074214 - 2074256
Alignment:
Q  482 aatctctaacaatgaatatttaagttggtgaataccaaaatct 524  Q
    ||||||||||||| |||||||||||| ||||||| ||||||||    
T  2074214 aatctctaacaataaatatttaagttagtgaatatcaaaatct 2074256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 461 - 507
Target Start/End: Complemental strand, 31801187 - 31801142
Alignment:
Q  461 atgtgatttttactatgtaagaatctctaacaatgaatatttaagtt 507  Q
    |||||||||||||||||||| ||||||||  ||||||||||||||||    
T  31801187 atgtgatttttactatgtaa-aatctctagtaatgaatatttaagtt 31801142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 17934442 - 17934506
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||  ||||||||| ||||||||| || |||  |||||||||    
T  17934442 tatgtgatttttactatgtaa-aatcttgaacaatgaacatttaagttagtaaatgtcaaaatctc 17934506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 36977592 - 36977656
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  36977592 tatgtgatttttactatgtaa-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctc 36977656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 10192769 - 10192833
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||| || |||  |||||||||    
T  10192769 tatgtgatttttactatgtaa-aatctcgaacaatgaatatttaagttagtaaatgtcaaaatctc 10192833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 461 - 556
Target Start/End: Original strand, 865780 - 865879
Alignment:
Q  461 atgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataact 555  Q
    |||||||||||||||||||| | || | ||||||||||||||||||| ||||||  ||||||||| |     ||||||  ||||||||||||||||||||    
T  865780 atgtgatttttactatgtaaaattc-cgaacaatgaatatttaagttagtgaatgtcaaaatctcttttttaacttatattaaatgagtttgaaataact 865878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 462 - 514
Target Start/End: Original strand, 5841504 - 5841555
Alignment:
Q  462 tgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||||| |||||| ||||||||||||||||||| ||||||    
T  5841504 tgtgatttttactatgtaa-aatctcgaacaatgaatatttaagttagtgaat 5841555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 463 - 514
Target Start/End: Complemental strand, 10378734 - 10378684
Alignment:
Q  463 gtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||| |||| |||||| ||||||||||||||||||||||||||    
T  10378734 gtgatttttactacgtaa-aatctcgaacaatgaatatttaagttggtgaat 10378684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 464 - 514
Target Start/End: Complemental strand, 26244385 - 26244336
Alignment:
Q  464 tgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    |||||||| |||||||| |||||| ||||||||||||||||||||||||||    
T  26244385 tgatttttcctatgtaa-aatctcgaacaatgaatatttaagttggtgaat 26244336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 561
Target Start/End: Complemental strand, 394288 - 394184
Alignment:
Q  461 atgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctcat-----acttatgctaaatgagtttgaaataact 555  Q
    |||||||||||||||||||| ||| || |||||||||||||||||||  |||||   |||||||  |     |||||| | |||||||||||||||||||    
T  394288 atgtgatttttactatgtaa-aatgtcaaacaatgaatatttaagttaatgaatgttaaaatcttttttttaacttataccaaatgagtttgaaataact 394190  T
Q  556 tctatt 561  Q
    ||||||    
T  394189 tctatt 394184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 464 - 525
Target Start/End: Complemental strand, 9771743 - 9771683
Alignment:
Q  464 tgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||| ||||||  |||||||||    
T  9771743 tgatttttactatgta-gaatctcgaacgatgaatatttaagttagtgaatgtcaaaatctc 9771683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 13146321 - 13146385
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    |||||||||||||| |||||| |||| | ||||||||||||||||||| ||||||  |||||||||    
T  13146321 tatgtgatttttaccatgtaa-aatcccgaacaatgaatatttaagttagtgaatgtcaaaatctc 13146385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 465 - 514
Target Start/End: Complemental strand, 15834760 - 15834712
Alignment:
Q  465 gatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    |||||||||||||||| |||||| ||||||||||||||| ||||||||||    
T  15834760 gatttttactatgtaa-aatctcgaacaatgaatatttaggttggtgaat 15834712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 15936938 - 15936874
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||||  |||||  |||||||||    
T  15936938 tatgtaatttttactatgtaa-aatctcaaacaatgaatatttaagttaatgaatgtcaaaatctc 15936874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 465 - 525
Target Start/End: Complemental strand, 32270329 - 32270270
Alignment:
Q  465 gatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||| |||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  32270329 gatttttactaagtaa-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctc 32270270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 460 - 507
Target Start/End: Original strand, 43583679 - 43583725
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagtt 507  Q
    ||||||||||||| ||||||| |||||| |||||||||||||||||||    
T  43583679 tatgtgatttttattatgtaa-aatctcgaacaatgaatatttaagtt 43583725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 482 - 524
Target Start/End: Original strand, 2068501 - 2068543
Alignment:
Q  482 aatctctaacaatgaatatttaagttggtgaataccaaaatct 524  Q
    |||||||||||||||||||||||| | |||||| |||||||||    
T  2068501 aatctctaacaatgaatatttaagctagtgaatgccaaaatct 2068543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 42522301 - 42522354
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||||||| |||||| |||||| |||||||||| | ||||||    
T  42522301 tatgtgatttttactatgtaa-aatctcgaacaataaatatttaaggtagtgaat 42522354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 462 - 514
Target Start/End: Original strand, 35286195 - 35286246
Alignment:
Q  462 tgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    |||||||||||| |||||| |||||  ||||||||||||||||||| ||||||    
T  35286195 tgtgatttttacaatgtaa-aatcttgaacaatgaatatttaagttagtgaat 35286246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 38580092 - 38580155
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatct 524  Q
    ||||| ||||||| || |||| |||| ||||||| ||||||||||||||||||||  ||||||||    
T  38580092 tatgttatttttattacgtaa-aatcactaacaaagaatatttaagttggtgaatgtcaaaatct 38580155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Complemental strand, 24968650 - 24968586
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||  |||||||||    
T  24968650 tatgtgatttttactatgtaa-aatctcgaacaatgaatatttaagttagtgaatgtcaaaatctc 24968586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 460 - 524
Target Start/End: Original strand, 50680003 - 50680066
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatct 524  Q
    ||||||||||||||||||||| |||||| ||| ||||||||||||||| ||||||  ||||||||    
T  50680003 tatgtgatttttactatgtaa-aatctcgaactatgaatatttaagttagtgaatgtcaaaatct 50680066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 514
Target Start/End: Complemental strand, 35321467 - 35321414
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    |||||||||||||| |||||| |||||| |||||||||||||||| || ||||||    
T  35321467 tatgtgatttttaccatgtaa-aatctcgaacaatgaatatttaacttagtgaat 35321414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 47606824 - 47606876
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaat 514  Q
    ||||||||||||||||||||| |||||| || ||||||||||||||| |||||||    
T  47606824 tatgtgatttttactatgtaa-aatctc-aaaaatgaatatttaagtcggtgaat 47606876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 525
Target Start/End: Original strand, 37874713 - 37874777
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagttggtgaataccaaaatctc 525  Q
    |||||||||||||  |||||| |||||| || |||||||||||||||| ||||||  |||||||||    
T  37874713 tatgtgatttttatcatgtaa-aatctcgaagaatgaatatttaagttagtgaatgtcaaaatctc 37874777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 463 - 507
Target Start/End: Complemental strand, 160869 - 160826
Alignment:
Q  463 gtgatttttactatgtaagaatctctaacaatgaatatttaagtt 507  Q
    |||||||||||||||||| |||||| |||||||||||||||||||    
T  160869 gtgatttttactatgtaa-aatctcgaacaatgaatatttaagtt 160826  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 460 - 506
Target Start/End: Complemental strand, 42118 - 42073
Alignment:
Q  460 tatgtgatttttactatgtaagaatctctaacaatgaatatttaagt 506  Q
    |||||||| |||||||||||| |||||| ||||||||||||||||||    
T  42118 tatgtgatctttactatgtaa-aatctcgaacaatgaatatttaagt 42073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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